Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20nemesis_20[genbank_20GCA_5F002245505.1_202017-08-10] 40,359 sequences; 808,524,533 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq4146 250 2e-61 seq2492 96.9 3e-15 seq3626 89.7 4e-13 seq4182 84.2 2e-11 seq688 82.4 6e-11 >seq4146 Length=100757 Score = 250 bits (276), Expect = 2e-61 Identities = 586/877 (67%), Gaps = 13/877 (1%) Strand=Plus/Plus Query 101102 ACGCCTGTCCAACCGCGGCCGTACATGGCAACGCCCACAATAATTTTGCGCGGGTCTACG 101161 || || |||||||| || || ||||| || || || || ||||| || |||| || Sbjct 15754 ACTCCAGTCCAACCACGACCATACATCGCTACACCAACTATAATCTTCTTAGGGTTGACT 15813 Query 101162 CCCTGGTTCGTGAGCGATTTAACAGCGTAATCCGTGTTGTACAGCTCGTTTGGGTTCCAA 101221 || ||| ||| |||||| | | || || |||| || ||||| ||||| Sbjct 15814 CCTTGGGCTAAGAGGTTTTTAACTCCAAAGTCAGTTGTGTAGGTTTCCTTTGGATTCCAT 15873 Query 101222 CTCGGCGCGTAGAGTGTAGTTTGATAGCCCAGATCGATGTTTGACCACGCGCCTTTGAAA 101281 || ||||| | | ||||||| || ||| | ||||||||||| ||||| || Sbjct 15874 GCAGGTGCGTACAACGGTGTTTGATGTCCAAGAGTGTCATTTGACCACGCTCCTTTAAAG 15933 Query 101282 TCGTAGCTCATGAGAAATATTTTATCGAGGAACTTTTGCGCAAGATCGTATTTTACTACA 101341 ||||| ||||| | || || | ||| | | | || || ||| | ||||| Sbjct 15934 TCGTAACTCATTAAGAAGATATGATCCATATATTGCTGAGCTTTCCTGTAGTCAACTACT 15993 Query 101342 GCAATTTTGTCGTGACCCGAACTAATTGCACTTGTTAATTCGTATGTTTTGCCCGTTT-- 101399 ||||| || ||| | |||||| || ||| | ||| ||| | || || || | Sbjct 15994 TGGATTTTATCCCAACCAGCACTAATAGCGGATGTCAGTTCATATTTCTTACCAGTCTCT 16053 Query 101400 GCAGTTGCAACTCGTCCAGCATTGCGCGCAATTCTTTCAGTAAAATGTTGTACGTGTCAG 101459 || | | ||||||| ||||||| | || || ||||||| ||| | || |||| | Sbjct 16054 GCGGAT--AACTCGTTCAGCATTTCACGTAACTCTTTCA-TAA---GCTGGACGTA--AA 16105 Query 101460 CGTCGCGTTC-TTTGTTGC--CGAGTGTTGGGTTGGCGCCTTTACCACCCGGAAACTCCC 101516 | || | || |||| | | |||| | || || || ||||| ||||| || ||||||| Sbjct 16106 CTTCACCGTCATTTGGTCCACCGAGGTTAGGATTAGCACCTTTTCCACCAGGGAACTCCC 16165 Query 101517 AATCGATGTCTACCCCGTCAAAAAATTTCCAAACCTGCAAAAATTCTTTGACAGAATCCA 101576 |||| ||||| || || || || ||||||||| || | || ||||| || || ||| Sbjct 16166 AATCAATGTCAACACCATCGAAGAATTTCCAAGTTTGGAGGAAGTCTTTCACTGATGCCA 16225 Query 101577 CAAACACACGCCGTTTTATCGCGTCGTGCATATAATAGAACGGGTCGGACAATGTCCAGC 101636 |||| | | ||||| | || | | | | ||||| || || | || |||||||| Sbjct 16226 CAAAACGATCTCTTTTTACCTTATCATCAAAAAAGTAGAATGGATCTGCCAGTGTCCAGC 16285 Query 101637 CGCCGATGGACGGCAAAATTTTAAGGTGTGGATTGGCCAATTTGGCCGCCATTAGCTGAC 101696 | ||||| || || | || || | | || | || ||| | ||| || || | Sbjct 16286 CTCCGATTGATGGAAGAACCTTCAAATCAGGTCTAGCTTGTTTCAAAGACATCAGTTGTC 16345 Query 101697 CAAAGTTGCCTTTGTAGGGCTCGTTCCAAGCAGATACACCTTTCTGCGGTTTTTGTATTG 101756 |||||||||||||||| || |||||||| | || | ||| ||||| |||||||||| | Sbjct 16346 CAAAGTTGCCTTTGTAAGGTTCGTTCCAGGAGGACAAACCCTTCTGTGGTTTTTGTAAAG 16405 Query 101757 CGGCCCAAGGATCGTGGATAGCAACTTTAAAATCTGAACGGCCCTGGCAAGAACGTTGCA 101816 | |||||||| || ||||||| |||||| || || || || |||||| | ||||| Sbjct 16406 CTGCCCAAGGGTCATGGATAGAAACTTTGAAGTCCTCTCGCCCGCTGCAAGATCTTTGCA 16465 Query 101817 ACGCTTCAAAACTACCGGGTATGGTTTTGAGGGCGTCGTTAAGGCCATCGCCGCCACAAA 101876 | |||| ||||| || || ||| | |||||||| || || |||||||| | Sbjct 16466 AAGCTTGGAAACTTCCTTCGATTTCTTTTAAACTGTCGTTAATTCCGTCACCGCCACAGA 16525 Query 101877 TGGGTATGAACCCGTACAACAAATGTGAGAGGTTGGGCAGCGGCACTTTGTCCACCGGAA 101936 |||| || || ||||| | | ||||| || || || | || || || || || || | Sbjct 16526 TGGGGATAAATCCGTAAAGAAGATGTGTAAGATTTGGAATGGGTACCTTATCTACTGGGA 16585 Query 101937 AGTTGCGACCATACACGCCCCATTCTACAAAATACGC 101973 | || | | || || ||||| || |||||||| || Sbjct 16586 ATTTTCTAGGGTAAACACCCCACTCCACAAAATAAGC 16622 >seq2492 Length=83244 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || |||| || |||| |||||||| ||||| ||||||||||| || ||||| || Sbjct 41230 CCACCTCTCAATCTCAGTACCAAATGGAGTGTGGATTCTTTTTGGATATTGTAGTCAG-- 41287 Query 20042 ATAGTTTTAGA--ATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 | ||| | || |||||| | || ||||| ||| | || |||||||| || || | Sbjct 41288 AGAGTGTACGACCATCTTCAAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCTGGTG 41347 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | || |||||||| |||||| || || | ||| || || || || Sbjct 41348 GGATACCCTCTTTGTCTTGAATTTTGGCCTTAACATTTTCAATAGTGTCCGATGGCTCAA 41407 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||| | |||||||||||||| ||||| || ||||||||||| ||||| Sbjct 41408 CTTCAAGAGTAATGGTTTTGCCAGTCAAGGTCTTGACAAAAATCTGCAT 41456 Score = 96.9 bits (106), Expect = 3e-15 Identities = 165/235 (70%), Gaps = 6/235 (3%) Strand=Plus/Plus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 |||| |||| || |||| |||||||| ||||| ||||||||||| || ||||| | | Sbjct 41684 TTCCACCTCTCAATCTCAGTACCAAATGGAGTGTGGATTCTTTTTGGATATTGTAGT--C 41741 Query 20040 CCATAGTTTTAGA--ATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATC-GA 20096 | ||| | || |||||| | || || || ||| | ||||||||||| || || | Sbjct 41742 AGAGAGTGTGCGACCATCTTCAAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGGTCTGG 41801 Query 20097 CGGGCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTT 20156 |||| | || |||||||| ||||| || || | ||| || || ||||| Sbjct 41802 CGGG-ATACCCTCTTTGTCTTGGATTTTAGCCTTTACATTTTCAATAGTGTCTGAAGGTT 41860 Query 20157 CCGTTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATTTT 20211 | || | |||||| ||||||||||| | || || |||||||| ||||| || Sbjct 41861 CTACCTCTAGGGTAATAGTTTTGCCGGTGAGGGTCTTTACAAAAATCTGCATGTT 41915 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || |||| || |||| |||||||| ||||| ||||||||||| || ||||| | || Sbjct 40546 CCACCTCTCAATCTCAGTACCAAATGGAGTGTGGATTCTTTTTGGATATTGTAGT--CCG 40603 Query 20042 ATAGTTTTAG--AATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 | ||| | | |||||| | || ||||| ||| | || |||||||| || || | Sbjct 40604 AGAGTGTGCGGCCATCTTCAAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCTGGTG 40663 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | || |||||||| ||||| || || | ||| || || ||| || Sbjct 40664 GGATACCCTCTTTGTCTTGGATTTTGGCCTTAACATTTTCAATAGTGTCTGAAGGCTCAA 40723 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||| | || ||||||||||| ||||| || ||||| ||||| ||||| Sbjct 40724 CTTCAAGAGTGATGGTTTTGCCAGTCAAGGTCTTGACGAAAATCTGCAT 40772 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || |||| || |||| |||||||| ||||| ||||||||||| || ||||| | | Sbjct 41002 CCACCTCTCAATCTCAGTACCAAATGGAGTGTGGATTCTTTTTGGATATTGTAGT--CTG 41059 Query 20042 ATAGTTTTAGA--ATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 | ||| | || |||||| | || ||||| ||| | || |||||||| || || | Sbjct 41060 AGAGTGTGCGACCATCTTCAAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCTGGTG 41119 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | || |||||||| ||||| || || | ||| || || || || Sbjct 41120 GGATACCCTCTTTGTCTTGGATTTTGGCCTTAACATTTTCAATAGTGTCTGATGGCTCAA 41179 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||| | || ||||||||||| ||||| || ||||| ||||| ||||| Sbjct 41180 CTTCAAGAGTGATGGTTTTGCCAGTCAAGGTCTTGACGAAAATCTGCAT 41228 >seq3626 Length=201135 Score = 89.7 bits (98), Expect = 4e-13 Identities = 162/235 (69%), Gaps = 4/235 (2%) Strand=Plus/Minus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 |||| |||||||| | || ||||| || || |||||||| ||||| |||||||||| | Sbjct 59293 TTCCACCTCGTAAGCGTAATACCAAGTGAAGCGTAGATTCCTTTTGAATGTTGTAAT--C 59236 Query 20040 CCATAGTTTTAG--AATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGAC 20097 | ||| | | |||||| | ||||| || || | ||||| | ||| |||||| Sbjct 59235 AGAGAGTGTGCGCCCATCTTCAAGCTGTTTCCCTGCGAAGATAAGTCGCTGCTGATCGGG 59176 Query 20098 GGGCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTC 20157 || | ||||||||||| |||||| ||| || | ||| | ||| || || Sbjct 59175 AGGGATACCTTCTTTGTCCTGAATTTTAGCTTTTACATTTTCAATTGTATCCGATGGCTC 59116 Query 20158 CGTTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATTTTT 20212 |||| ||| |||||||| || || | || || || || || ||||||||| Sbjct 59115 AACCTCCAAGGTTATGGTTTTTCCAGTGAGTGTCTTCACGAATATCTGCATTTTT 59061 >seq4182 Length=188933 Score = 84.2 bits (92), Expect = 2e-11 Identities = 162/237 (68%), Gaps = 4/237 (2%) Strand=Plus/Plus Query 19978 TTTTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATC 20037 ||| ||||||| |||||||||||| | ||||| ||||| || || || || ||||| || Sbjct 74268 TTTACCTCCTCTTAACCTCAACACAAGATGTAACGTAGACTCCTTCTGAATATTGTAGTC 74327 Query 20038 GCCCATAGTTTTAG--AATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCG 20095 | ||| | | | |||||||| ||||| || ||| | || | | || ||||| Sbjct 74328 G--GATAATGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAGATCAAACGTTGCTGATCC 74385 Query 20096 ACGGGCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGT 20155 || | |||||||| || |||||| ||| || | ||| || |||| || Sbjct 74386 GGTGGAATACCTTCTTTATCTTGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGCC 74445 Query 20156 TCCGTTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATTTTT 20212 ||| || | ||| |||||||| || || | ||||| || || || |||||| || Sbjct 74446 TCCACCTCGAGGGTGATGGTTTTCCCCGTAAGGGTTTTTACGAATATCTGCATTGTT 74502 >seq688 Length=109112 Score = 82.4 bits (90), Expect = 6e-11 Identities = 139/200 (70%), Gaps = 1/200 (1%) Strand=Plus/Plus Query 23554 CCTTT-ACGAGCCGCACGTATGTGCAGCGATCAAACCAACGTGCGTGTTCTTCCCACGGC 23612 ||||| || || | ||||| | || ||||| ||||||||||| |||| ||||| || Sbjct 9396 CCTTTGACAAGTTGGACGTAGGCACATCGATCGAACCAACGTGCATGTTGCTCCCAGGGA 9455 Query 23613 TCGTCGGTGCTTTCCCAGTCTTTGAGGCCGCCGTCGCAATGAAAACATTTGACCCTGTCA 23672 ||| |||||||||| || | || ||||| || ||| ||||| |||| Sbjct 9456 ATATCGTCATTTTCCCAGTCCTTCAAACCACCGTCACAGAAAAAGCATTTCGTTTTGTCT 9515 Query 23673 CCCTTGCCGGTGTAATAAAAACCGGCTTCAGCTAATTGCTCTGGCTTTTGTTTTAAACTA 23732 || | || ||||| | ||||| ||||| |||| | ||| ||||||||| | ||| Sbjct 9516 CCTTGACCAGTGTAGAAGAAACCAGCTTCGGCTAGCTCCTCAGGCTTTTGTCGCATACTG 9575 Query 23733 ACCGGCCAATCCACAAAAGT 23752 |||||||| ||||| || Sbjct 9576 CGAGGCCAATCGACAAATGT 9595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419380815414879