Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calephelis_20nemesis_20[genbank_20GCA_5F002245505.1_202017-08-10]
40,359 sequences; 808,524,533 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq4182 185 2e-41
seq2492 183 7e-41
seq3626 168 2e-36
seq409 122 2e-22
seq387 114 3e-20
>seq4182
Length=188933
Score = 185 bits (204), Expect = 2e-41
Identities = 182/235 (77%), Gaps = 0/235 (0%)
Strand=Plus/Plus
Query 104326 ATTTATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATA 104385
|||| | || ||||||| ||| | || |||||||| ||||| || ||||||||||| ||
Sbjct 74265 ATTTTTACCTCCTCTTAACCTCAACACAAGATGTAACGTAGACTCCTTCTGAATATTGTA 74324
Query 104386 GTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATC 104445
||| |||| || | || ||||| || ||||| |||||||| || | | || |||||
Sbjct 74325 GTCGGATAATGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAGATCAAACGTTGCTGATC 74384
Query 104446 AGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGG 104505
|| || || ||||||||||| ||||| || |||||||||||||| | |||||| ||
Sbjct 74385 CGGTGGAATACCTTCTTTATCTTGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGC 74444
Query 104506 TTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560
|| ||||| || || || || || || ||||| |||||||| ||||||||||||
Sbjct 74445 CTCCACCTCGAGGGTGATGGTTTTCCCCGTAAGGGTTTTTACGAATATCTGCATT 74499
>seq2492
Length=83244
Score = 183 bits (202), Expect = 7e-41
Identities = 182/236 (77%), Gaps = 0/236 (0%)
Strand=Plus/Plus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
||||| ||||| | || ||||| | ||| | ||| |||||||| || ||||| ||||||
Sbjct 41683 ATTCCACCTCTCAATCTCAGTACCAAATGGAGTGTGGATTCTTTTTGGATATTGTAGTCA 41742
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|| || || | ||| ||||| || || || |||||||| || |||||||| || || ||
Sbjct 41743 GAGAGTGTGCGACCATCTTCAAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGGTCTGGC 41802
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509
|| || || ||||| || || || || || ||||||||||| | || || |||||||
Sbjct 41803 GGGATACCCTCTTTGTCTTGGATTTTAGCCTTTACATTTTCAATAGTGTCTGAAGGTTCT 41862
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTGTG 104565
|||||||| |||||||| || || || || || |||||||| |||||||| || ||
Sbjct 41863 ACCTCTAGGGTAATAGTTTTGCCGGTGAGGGTCTTTACAAAAATCTGCATGTTCTG 41918
Score = 141 bits (156), Expect = 2e-28
Identities = 170/231 (74%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
|| || ||||| | || ||||| | ||| | ||| ||||||||||| ||||| |||||
Sbjct 41455 ATCCCACCTCTCAATCTCAGTACCAAATGGAGTGTGGATTCTTTCTGGATATTGTAGTCC 41514
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|| || || | || ||||| || || || || ||||| || |||||||| || || ||
Sbjct 41515 GAGAGTGTGCGGCCATCTTCAAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCTGGT 41574
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509
|| || || ||||| || ||||| || ||||| |||||||| | ||| || || ||
Sbjct 41575 GGGATACCCTCTTTGTCTTGAATTTTGGCTTTAACATTTTCAATGGTGTCTGATGGCTCA 41634
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560
|| || ||||| || || || ||||| | || || || || |||||||||
Sbjct 41635 ACTTCAAGTGTGATGGTTTTGCCAGTTAAGGTCTTGACGAAAATCTGCATT 41685
Score = 131 bits (144), Expect = 4e-25
Identities = 167/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
|| || ||||| | || ||||| | ||| | ||| ||||||||||| ||||| |||||
Sbjct 40315 ATCCCACCTCTCAATCTCAGTACCAAATGGAGTGTGGATTCTTTCTGGATATTGTAGTCC 40374
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|| || || | ||| ||||| || || || || ||||| || |||||||| || || ||
Sbjct 40375 GAGAGTGTGCGACCATCTTCAAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCTGGT 40434
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509
|| || || ||||| || || || || || || |||||||| | || || || ||
Sbjct 40435 GGGATACCCTCTTTGTCTTGGATTTTGGCCTTAACATTTTCAATAGTGTCTGATGGCTCA 40494
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|| || || || || || || ||||| | || ||||| || ||||||||
Sbjct 40495 ACTTCAAGAGTGATGGTTTTGCCAGTCAAGGTCTTTACGAAAATCTGCAT 40544
>seq3626
Length=201135
Score = 168 bits (186), Expect = 2e-36
Identities = 159/203 (78%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416
|| || || ||||| || ||||| ||||||||||| || |||| || ||||| |||||
Sbjct 60179 TGCAAAGTGGATTCCTTTTGAATGTTATAGTCAGAAAGGGTTCGCCCATCTTCCAGTTGC 60120
Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476
||||||||||| || || | |||||| || ||||| || ||||| || ||||| || ||
Sbjct 60119 TTTCCAGCAAAGATAAGTCGCTGTTGGTCTGGAGGGATGCCTTCCTTGTCCTGGATTTTG 60060
Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536
||||| ||||| || | || || |||||| || |||| |||||| ||||| ||||||
Sbjct 60059 GCTTTGACATTCTCAATTGTGTCTGAAGGTTCAACTTCTAATGTAATGGTCTTTCCAGTA 60000
Query 104537 AGTGTTTTTACAAATATCTGCAT 104559
|| || || ||||| ||||||||
Sbjct 59999 AGAGTCTTGACAAAGATCTGCAT 59977
Score = 163 bits (180), Expect = 7e-35
Identities = 174/230 (76%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
|| || |||| || | || || || || | || || ||||| ||||| || ||||||
Sbjct 59978 ATACCACCTCGCAGACGGAGAACAAGGTGAAGAGTGGACTCTTTTTGAATGTTGTAGTCA 59919
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|| || |||| || ||||| ||||||||||||||||| || || | |||||| || |||
Sbjct 59918 GACAGGGTTCGCCCATCTTCCAGTTGTTTTCCAGCAAAGATGAGTCGCTGTTGGTCTGGA 59859
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509
|| || ||||| || ||||| || || ||||| ||||| || | || || ||||||
Sbjct 59858 GGGATGCCTTCCTTGTCCTGGATTTTAGCTTTGACATTCTCAATTGTGTCTGAAGGTTCA 59799
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|| || | ||||||||||| |||||||| || || ||||| ||||||||
Sbjct 59798 ACTTCCAAAGTAATAGTCTTTCCAGTAAGAGTCTTGACAAAGATCTGCAT 59749
Score = 158 bits (174), Expect = 3e-33
Identities = 173/230 (75%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
|| || |||| || | ||||| || || | || || ||||| ||||| || ||||||
Sbjct 59750 ATACCACCTCGCAGACGCAGTACAAGGTGAAGAGTGGACTCTTTTTGAATGTTGTAGTCA 59691
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|| || |||| || ||||| | ||||||||||||||| || || | |||||| || |||
Sbjct 59690 GACAGGGTTCGCCCATCTTCCAATTGTTTTCCAGCAAAGATGAGTCGCTGTTGGTCTGGA 59631
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509
|| || ||||| || ||||| || || ||||| ||||| || | || || ||||||
Sbjct 59630 GGGATGCCTTCCTTGTCCTGGATTTTGGCTTTGACATTCTCAATTGTGTCTGAAGGTTCA 59571
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|| || | ||||| ||||| |||||||| || || ||||| ||||||||
Sbjct 59570 ACTTCCAAAGTAATGGTCTTTCCAGTAAGAGTCTTAACAAAGATCTGCAT 59521
Score = 156 bits (172), Expect = 1e-32
Identities = 173/231 (75%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
|| || |||| || | || || || || | || || ||||| ||||| || ||||||
Sbjct 59522 ATACCACCTCGCAGACGGAGAACAAGGTGAAGAGTGGACTCTTTTTGAATGTTGTAGTCA 59463
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|| || || | |||||||| || ||||||||||||||||| |||| || || || |||
Sbjct 59462 GAAAGGGTACGTCCGTCTTCCAGCTGTTTTCCAGCAAAAATGAGCCGTTGCTGGTCCGGA 59403
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509
|| || |||||||| || || || || || ||||| ||||| | ||||| || |||
Sbjct 59402 GGGATGCCTTCTTTGTCTTGGATTTTCGCCTTTACGTTTTCGATAGTATCTGATGGCTCT 59343
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560
|| |||| ||||| |||||||| || || ||||| ||||| || ||||||
Sbjct 59342 ACTTCTAAGGTAATCGTCTTACCTGTGAGAGTTTTAACAAAAATTTGCATT 59292
Score = 154 bits (170), Expect = 3e-32
Identities = 176/234 (75%), Gaps = 2/234 (1%)
Strand=Plus/Minus
Query 104330 ATTCCCCCTCTTA-GCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTC 104388
||||| |||| || || ||| ||| | || | |||||||| || ||||| || || ||
Sbjct 59294 ATTCCACCTCGTAAGCGTAA-TACCAAGTGAAGCGTAGATTCCTTTTGAATGTTGTAATC 59236
Query 104389 AGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGG 104448
||| || || | || ||||| || ||||| || || || || || | ||| ||||| ||
Sbjct 59235 AGAGAGTGTGCGCCCATCTTCAAGCTGTTTCCCTGCGAAGATAAGTCGCTGCTGATCGGG 59176
Query 104449 AGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTC 104508
||| || |||||||| |||||||| || |||||||||||||| | ||||| || ||
Sbjct 59175 AGGGATACCTTCTTTGTCCTGAATTTTAGCTTTTACATTTTCAATTGTATCCGATGGCTC 59116
Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562
||||| | || || || || ||||| ||||| || || ||||||||||||||
Sbjct 59115 AACCTCCAAGGTTATGGTTTTTCCAGTGAGTGTCTTCACGAATATCTGCATTTT 59062
>seq409
Length=488447
Score = 122 bits (134), Expect = 2e-22
Identities = 135/180 (75%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 268854 TTCTTGCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCT 268913
|||| || |||||||| | |||||| || || || ||||||||||| ||| ||| |
Sbjct 76372 TTCTAGCATTTTTTGCCGCATCTGATGGAATTGTCAATGAAAATCTAGTGGAGCGGTTTT 76313
Query 268914 GTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAA 268973
|||||||| || || |||| ||||||| || || || ||||| |||||||| ||||
Sbjct 76312 CACAAGAGGTTCAAGTTACTGAGGCCAGATTCTTCTATGGGTTCCAAATAGCTATGGAAA 76253
Query 268974 ATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATATAGATGATAACAACGAAA 269033
|| |||| || || |||||| ||||||||| || || || || |||| ||| ||||
Sbjct 76252 ATGTTCACTCTGAAATGTACTCTCTATTAATTGACACATACATTCGTGATTCCAAAGAAA 76193
Score = 84.2 bits (92), Expect = 5e-11
Identities = 79/101 (78%), Gaps = 0/101 (0%)
Strand=Plus/Minus
Query 268689 ATAACCCAGATAGATTTGTGATATTTCCAATACAGCATGGTGATATATGGAGGATGTACA 268748
||||||| ||||||||| ||||| || || ||| || ||||| ||| |||||||
Sbjct 76613 ATAACCCTCGTAGATTTGTTATATTCCCTATCCAGTATCCAGATATTTGGGAAATGTACA 76554
Query 268749 AACAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGAT 268789
|| | |||| ||||| ||||||||||| |||||||| |||
Sbjct 76553 AAAAAGCCGAAGCTTCCTTTTGGACTGTTGAAGAAGTGGAT 76513
>seq387
Length=840652
Score = 114 bits (126), Expect = 3e-20
Identities = 107/135 (79%), Gaps = 1/135 (1%)
Strand=Plus/Minus
Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488
|||| |||||| ||||| ||||| ||||| || ||||| |||||||| ||||| ||||||
Sbjct 551551 ATTA-CCTCTGCTGATCTGGAGGGATTCCCTCCTTATCTTGAATCTTAGCTTTGACATTT 551493
Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548
|| | || || ||||| ||||| || || || ||||| || ||||| || || |||
Sbjct 551492 TCAATTGTGTCCGAGGGTTCGACCTCAAGAGTGATGGTCTTGCCCGTAAGGGTCTTCACA 551433
Query 104549 AATATCTGCATTTTG 104563
|| ||||||||||||
Sbjct 551432 AAGATCTGCATTTTG 551418
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1150803012247172
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