Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20nemesis_20[genbank_20GCA_5F002245505.1_202017-08-10] 40,359 sequences; 808,524,533 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq4182 185 2e-41 seq2492 183 7e-41 seq3626 168 2e-36 seq409 122 2e-22 seq387 114 3e-20 >seq4182 Length=188933 Score = 185 bits (204), Expect = 2e-41 Identities = 182/235 (77%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 104326 ATTTATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATA 104385 |||| | || ||||||| ||| | || |||||||| ||||| || ||||||||||| || Sbjct 74265 ATTTTTACCTCCTCTTAACCTCAACACAAGATGTAACGTAGACTCCTTCTGAATATTGTA 74324 Query 104386 GTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATC 104445 ||| |||| || | || ||||| || ||||| |||||||| || | | || ||||| Sbjct 74325 GTCGGATAATGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAGATCAAACGTTGCTGATC 74384 Query 104446 AGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGG 104505 || || || ||||||||||| ||||| || |||||||||||||| | |||||| || Sbjct 74385 CGGTGGAATACCTTCTTTATCTTGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGC 74444 Query 104506 TTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || ||||| || || || || || || ||||| |||||||| |||||||||||| Sbjct 74445 CTCCACCTCGAGGGTGATGGTTTTCCCCGTAAGGGTTTTTACGAATATCTGCATT 74499 >seq2492 Length=83244 Score = 183 bits (202), Expect = 7e-41 Identities = 182/236 (77%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| ||||| | || ||||| | ||| | ||| |||||||| || ||||| |||||| Sbjct 41683 ATTCCACCTCTCAATCTCAGTACCAAATGGAGTGTGGATTCTTTTTGGATATTGTAGTCA 41742 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | ||| ||||| || || || |||||||| || |||||||| || || || Sbjct 41743 GAGAGTGTGCGACCATCTTCAAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGGTCTGGC 41802 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || ||||| || || || || || ||||||||||| | || || ||||||| Sbjct 41803 GGGATACCCTCTTTGTCTTGGATTTTAGCCTTTACATTTTCAATAGTGTCTGAAGGTTCT 41862 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTGTG 104565 |||||||| |||||||| || || || || || |||||||| |||||||| || || Sbjct 41863 ACCTCTAGGGTAATAGTTTTGCCGGTGAGGGTCTTTACAAAAATCTGCATGTTCTG 41918 Score = 141 bits (156), Expect = 2e-28 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| | || ||||| | ||| | ||| ||||||||||| ||||| ||||| Sbjct 41455 ATCCCACCTCTCAATCTCAGTACCAAATGGAGTGTGGATTCTTTCTGGATATTGTAGTCC 41514 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || ||||| || || || || ||||| || |||||||| || || || Sbjct 41515 GAGAGTGTGCGGCCATCTTCAAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCTGGT 41574 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || ||||| || ||||| || ||||| |||||||| | ||| || || || Sbjct 41575 GGGATACCCTCTTTGTCTTGAATTTTGGCTTTAACATTTTCAATGGTGTCTGATGGCTCA 41634 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || || ||||| || || || ||||| | || || || || ||||||||| Sbjct 41635 ACTTCAAGTGTGATGGTTTTGCCAGTTAAGGTCTTGACGAAAATCTGCATT 41685 Score = 131 bits (144), Expect = 4e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| | || ||||| | ||| | ||| ||||||||||| ||||| ||||| Sbjct 40315 ATCCCACCTCTCAATCTCAGTACCAAATGGAGTGTGGATTCTTTCTGGATATTGTAGTCC 40374 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | ||| ||||| || || || || ||||| || |||||||| || || || Sbjct 40375 GAGAGTGTGCGACCATCTTCAAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCTGGT 40434 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || ||||| || || || || || || |||||||| | || || || || Sbjct 40435 GGGATACCCTCTTTGTCTTGGATTTTGGCCTTAACATTTTCAATAGTGTCTGATGGCTCA 40494 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || || || || ||||| | || ||||| || |||||||| Sbjct 40495 ACTTCAAGAGTGATGGTTTTGCCAGTCAAGGTCTTTACGAAAATCTGCAT 40544 >seq3626 Length=201135 Score = 168 bits (186), Expect = 2e-36 Identities = 159/203 (78%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 || || || ||||| || ||||| ||||||||||| || |||| || ||||| ||||| Sbjct 60179 TGCAAAGTGGATTCCTTTTGAATGTTATAGTCAGAAAGGGTTCGCCCATCTTCCAGTTGC 60120 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 ||||||||||| || || | |||||| || ||||| || ||||| || ||||| || || Sbjct 60119 TTTCCAGCAAAGATAAGTCGCTGTTGGTCTGGAGGGATGCCTTCCTTGTCCTGGATTTTG 60060 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 ||||| ||||| || | || || |||||| || |||| |||||| ||||| |||||| Sbjct 60059 GCTTTGACATTCTCAATTGTGTCTGAAGGTTCAACTTCTAATGTAATGGTCTTTCCAGTA 60000 Query 104537 AGTGTTTTTACAAATATCTGCAT 104559 || || || ||||| |||||||| Sbjct 59999 AGAGTCTTGACAAAGATCTGCAT 59977 Score = 163 bits (180), Expect = 7e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || |||| || | || || || || | || || ||||| ||||| || |||||| Sbjct 59978 ATACCACCTCGCAGACGGAGAACAAGGTGAAGAGTGGACTCTTTTTGAATGTTGTAGTCA 59919 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || |||| || ||||| ||||||||||||||||| || || | |||||| || ||| Sbjct 59918 GACAGGGTTCGCCCATCTTCCAGTTGTTTTCCAGCAAAGATGAGTCGCTGTTGGTCTGGA 59859 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || ||||| || || ||||| ||||| || | || || |||||| Sbjct 59858 GGGATGCCTTCCTTGTCCTGGATTTTAGCTTTGACATTCTCAATTGTGTCTGAAGGTTCA 59799 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || | ||||||||||| |||||||| || || ||||| |||||||| Sbjct 59798 ACTTCCAAAGTAATAGTCTTTCCAGTAAGAGTCTTGACAAAGATCTGCAT 59749 Score = 158 bits (174), Expect = 3e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || |||| || | ||||| || || | || || ||||| ||||| || |||||| Sbjct 59750 ATACCACCTCGCAGACGCAGTACAAGGTGAAGAGTGGACTCTTTTTGAATGTTGTAGTCA 59691 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || |||| || ||||| | ||||||||||||||| || || | |||||| || ||| Sbjct 59690 GACAGGGTTCGCCCATCTTCCAATTGTTTTCCAGCAAAGATGAGTCGCTGTTGGTCTGGA 59631 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || ||||| || || ||||| ||||| || | || || |||||| Sbjct 59630 GGGATGCCTTCCTTGTCCTGGATTTTGGCTTTGACATTCTCAATTGTGTCTGAAGGTTCA 59571 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || | ||||| ||||| |||||||| || || ||||| |||||||| Sbjct 59570 ACTTCCAAAGTAATGGTCTTTCCAGTAAGAGTCTTAACAAAGATCTGCAT 59521 Score = 156 bits (172), Expect = 1e-32 Identities = 173/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || |||| || | || || || || | || || ||||| ||||| || |||||| Sbjct 59522 ATACCACCTCGCAGACGGAGAACAAGGTGAAGAGTGGACTCTTTTTGAATGTTGTAGTCA 59463 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | |||||||| || ||||||||||||||||| |||| || || || ||| Sbjct 59462 GAAAGGGTACGTCCGTCTTCCAGCTGTTTTCCAGCAAAAATGAGCCGTTGCTGGTCCGGA 59403 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || |||||||| || || || || || ||||| ||||| | ||||| || ||| Sbjct 59402 GGGATGCCTTCTTTGTCTTGGATTTTCGCCTTTACGTTTTCGATAGTATCTGATGGCTCT 59343 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || |||| ||||| |||||||| || || ||||| ||||| || |||||| Sbjct 59342 ACTTCTAAGGTAATCGTCTTACCTGTGAGAGTTTTAACAAAAATTTGCATT 59292 Score = 154 bits (170), Expect = 3e-32 Identities = 176/234 (75%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTA-GCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTC 104388 ||||| |||| || || ||| ||| | || | |||||||| || ||||| || || || Sbjct 59294 ATTCCACCTCGTAAGCGTAA-TACCAAGTGAAGCGTAGATTCCTTTTGAATGTTGTAATC 59236 Query 104389 AGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGG 104448 ||| || || | || ||||| || ||||| || || || || || | ||| ||||| || Sbjct 59235 AGAGAGTGTGCGCCCATCTTCAAGCTGTTTCCCTGCGAAGATAAGTCGCTGCTGATCGGG 59176 Query 104449 AGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTC 104508 ||| || |||||||| |||||||| || |||||||||||||| | ||||| || || Sbjct 59175 AGGGATACCTTCTTTGTCCTGAATTTTAGCTTTTACATTTTCAATTGTATCCGATGGCTC 59116 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 ||||| | || || || || ||||| ||||| || || |||||||||||||| Sbjct 59115 AACCTCCAAGGTTATGGTTTTTCCAGTGAGTGTCTTCACGAATATCTGCATTTT 59062 >seq409 Length=488447 Score = 122 bits (134), Expect = 2e-22 Identities = 135/180 (75%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 268854 TTCTTGCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCT 268913 |||| || |||||||| | |||||| || || || ||||||||||| ||| ||| | Sbjct 76372 TTCTAGCATTTTTTGCCGCATCTGATGGAATTGTCAATGAAAATCTAGTGGAGCGGTTTT 76313 Query 268914 GTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAA 268973 |||||||| || || |||| ||||||| || || || ||||| |||||||| |||| Sbjct 76312 CACAAGAGGTTCAAGTTACTGAGGCCAGATTCTTCTATGGGTTCCAAATAGCTATGGAAA 76253 Query 268974 ATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATATAGATGATAACAACGAAA 269033 || |||| || || |||||| ||||||||| || || || || |||| ||| |||| Sbjct 76252 ATGTTCACTCTGAAATGTACTCTCTATTAATTGACACATACATTCGTGATTCCAAAGAAA 76193 Score = 84.2 bits (92), Expect = 5e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 268689 ATAACCCAGATAGATTTGTGATATTTCCAATACAGCATGGTGATATATGGAGGATGTACA 268748 ||||||| ||||||||| ||||| || || ||| || ||||| ||| ||||||| Sbjct 76613 ATAACCCTCGTAGATTTGTTATATTCCCTATCCAGTATCCAGATATTTGGGAAATGTACA 76554 Query 268749 AACAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGAT 268789 || | |||| ||||| ||||||||||| |||||||| ||| Sbjct 76553 AAAAAGCCGAAGCTTCCTTTTGGACTGTTGAAGAAGTGGAT 76513 >seq387 Length=840652 Score = 114 bits (126), Expect = 3e-20 Identities = 107/135 (79%), Gaps = 1/135 (1%) Strand=Plus/Minus Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 |||| |||||| ||||| ||||| ||||| || ||||| |||||||| ||||| |||||| Sbjct 551551 ATTA-CCTCTGCTGATCTGGAGGGATTCCCTCCTTATCTTGAATCTTAGCTTTGACATTT 551493 Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548 || | || || ||||| ||||| || || || ||||| || ||||| || || ||| Sbjct 551492 TCAATTGTGTCCGAGGGTTCGACCTCAAGAGTGATGGTCTTGCCCGTAAGGGTCTTCACA 551433 Query 104549 AATATCTGCATTTTG 104563 || |||||||||||| Sbjct 551432 AAGATCTGCATTTTG 551418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150803012247172