Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20nemesis_20[genbank_20GCA_5F002245505.1_202017-08-10] 40,359 sequences; 808,524,533 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq4146 201 1e-46 seq3626 95.1 1e-14 >seq4146 Length=100757 Score = 201 bits (222), Expect = 1e-46 Identities = 478/714 (67%), Gaps = 9/714 (1%) Strand=Plus/Minus Query 30231 TTACTTTGTAGAGTGGGGTGTTTACGACAGACAATATCCAGCAGACTTAGTTCCCGTCCC 30290 ||| ||||| ||||||||||||||| ||| ||| |||| ||| || ||| | || Sbjct 16620 TTATTTTGTGGAGTGGGGTGTTTACCCTAGAAAATTCCCAGTAGATAAGGTACCCATTCC 16561 Query 30291 CAACCTTACGCATCTTTTGTATGGCTTTGTGCCTCTCTGCGGTGGAGATGGTATAAACGA 30350 || ||||| |||||| | || || ||| | || |||| || || || || || ||||| Sbjct 16560 AAATCTTACACATCTTCTTTACGGATTTATCCCCATCTGTGGCGGTGACGGAATTAACGA 16501 Query 30351 TAGCTTAAAGCAAGTGCCGGGTTCGTTTGAGGCTTTACAAAAATCTTGC-GCGGGTCGAG 30409 || ||||| || | || || | ||||| |||| ||||||| ||||| |||| Sbjct 16500 CAGTTTAAAAGAAATCGAAGGAAGTTTCCAAGCTTTGCAAAGATCTTGCAGCGGG-CGAG 16442 Query 30410 AGGATTTTAAAGTGACGATTCACGATATTTGGGGCGCTCTTCAAAAACCACAAAAAGGAG 30469 |||| || ||||| | || || || ||||| ||| | ||||||||||| || || Sbjct 16441 AGGACTTCAAAGTTTCTATCCATGACCCTTGGGCAGCTTTACAAAAACCACAGAAGGGTT 16382 Query 30470 TGGGCGCTTGGGACGATCCGTATAAAGGAAATTTTGGCCAACTGATGGCGATTAAAAGAC 30529 || | | ||| |||| || || ||||| || ||||| ||||||||| | | ||| | Sbjct 16381 TGTCCTCCTGGAACGAACCTTACAAAGGCAACTTTGGACAACTGATGTCTTTGAAACAAG 16322 Query 30530 ACAATCCCGACCTTACGATTTTACCGTCTATTGGCGGGTGGACACTTAGCGACCCTTTCT 30589 | || || | | | || | || || || || || |||||||| || || |||| Sbjct 16321 CTAGACCTGATTTGAAGGTTCTTCCATCAATCGGAGGCTGGACACTGGCAGATCCATTCT 16262 Query 30590 -TTAAATTGA-GTTCTGCCGAAAATCGCGCCGTTTTCGTTGAGTCCGCACGAGAGTATTT 30647 | |||| | | | |||| | |||||| || | || | ||| | | Sbjct 16261 ACTTTTTTGATGATAAGGTAAAAAGAG-ATCGTTTT-GTGGCATCAGTGAAAGACTTCCT 16204 Query 30648 GCGCACATGGAAATTTTTTGACGGACTAGACATCGACTGGGAGTTTCCGGGCGGTAAAGG 30707 | || |||||||| || || || | ||||| || |||||||| || || || ||||| Sbjct 16203 CCAAACTTGGAAATTCTTCGATGGTGTTGACATTGATTGGGAGTTCCCTGGTGGAAAAGG 16144 Query 30708 TGCTAATCCCGAATTAGGAGATCCAGAAAAGGATGGAGTAACATATGTGCAGTTATTGAA 30767 ||||||||| | | || | || ||| || || | | || || ||| | |||| Sbjct 16143 TGCTAATCCTAACCTCGGTGGACC---AAATGACGGTGAAGTTTACGTCCAGCTTATGAA 16087 Query 30768 AGAGCTCAGAGAAATGCTAAACGATCTTTCTAAAGAAACAGGGAAAAAATACCAGCTCAC 30827 |||| | | |||||||| ||||| | || ||| || || || ||||| | || || Sbjct 16086 AGAGTTACGTGAAATGCTGAACGAGTTATCCGCAGAGACTGGTAAGAAATATGAACTGAC 16027 Query 30828 CTCGGCGATTAGCGCGGGGTACGATAAAATCTCTATAGTTAATTATGAAAATGCGCAAGA 30887 || || ||||| || || | ||||||||| ||||| | || || || || | Sbjct 16026 ATCCGCTATTAGTGCTGGTTGGGATAAAATCCAAGTAGTTGACTACAGGAAAGCTCAGCA 15967 Query 30888 GTATCTTGATCACATTTTTGTTATGACGTACGATTTTAAAGGCGCTTGGTCTAA 30941 ||| | ||||| || || | |||| ||||| |||||||| || ||||| || Sbjct 15966 ATATATGGATCATATCTTCTTAATGAGTTACGACTTTAAAGGAGCGTGGTCAAA 15913 >seq3626 Length=201135 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 || || || || | ||| || || ||||| || |||||||||||||||||||||| Sbjct 59291 CCACCTCGTAAGCGTAATACCAAGTGAAGCGTAGATTCCTTTTGAATGTTGTAATCAGAG 59232 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 | | ||| | || || ||||| || || || | || | ||||||||||| || Sbjct 59231 AGTGTGCGCCCATCTTCAAGCTGTTTCCCTGCGAAGATAAGTCGCTGCTGATCGGGAGGG 59172 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679 | || ||| |||||| |||||| || | | | || ||||| | | ||| | Sbjct 59171 ATACCTTCTTTGTCCTGAATTTTAGCTTTTACATTTTCAATTGTATCCGATGGCTCAACC 59112 Query 48680 TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || | ||||||||||| || ||||| || ||||| || |||||||| Sbjct 59111 TCCAAGGTTATGGTTTTTCCAGTGAGTGTCTTCACGAATATCTGCAT 59065 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421043996934359