Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20nemesis_20[genbank_20GCA_5F002245505.1_202017-08-10] 40,359 sequences; 808,524,533 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq3626 129 5e-25 seq4182 122 8e-23 seq2492 114 1e-20 seq387 86.0 6e-12 >seq3626 Length=201135 Score = 129 bits (142), Expect = 5e-25 Identities = 175/242 (72%), Gaps = 4/242 (2%) Strand=Plus/Minus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || ||| |||| || || || |||||||| | |||||||||||||| | Sbjct 59304 AAAAATTTGCATTCCACCTCGTAAGCGTAATACCAAGTGAAGCGTAGATTCCTTTTGAAT 59245 Query 94828 GTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTT 94885 ||| ||||| | ||||| | ||| || |||||||| || | ||||| | || Sbjct 59244 GTTGTAATCAG--AGAGTGTGCGCCCATCTTCAAGCTGTTTCCCTGCGAAGATAAGTCGC 59187 Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 |||||||| ||||| |||||||||||||| | |||||| || || || | | || Sbjct 59186 TGCTGATCGGGAGGGATACCTTCTTTGTCCTGAATTTTAGCTTTTACATTTTCAATTGTA 59127 Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 || | | || || || | || |||||||||||||| || || ||||| || |||||| Sbjct 59126 TCCGATGGCTCAACCTCCAAGGTTATGGTTTTTCCAGTGAGTGTCTTCACGAATATCTGC 59067 Query 95006 AT 95007 || Sbjct 59066 AT 59065 Score = 129 bits (142), Expect = 5e-25 Identities = 160/217 (74%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA- 94851 || || |||||||||||||| ||||||||||| | |||||| || | || ||| | Sbjct 60191 CGTAATACCAAGTGCAAAGTGGATTCCTTTTGAATGTTATAGTCAG--AAAGGGTTCGCC 60134 Query 94852 -ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910 ||| ||||| || ||||| ||||||| | || || || |||||||| || ||||| | Sbjct 60133 CATCTTCCAGTTGCTTTCCAGCAAAGATAAGTCGCTGTTGGTCTGGAGGGATGCCTTCCT 60074 Query 94911 TGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGA 94970 |||| | ||||| || ||||| | | ||||| | | || || || | || | Sbjct 60073 TGTCCTGGATTTTGGCTTTGACATTCTCAATTGTGTCTGAAGGTTCAACTTCTAATGTAA 60014 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| |||||||||||||| || |||||||||||||| Sbjct 60013 TGGTCTTTCCAGTAAGAGTCTTGACAAAGATCTGCAT 59977 Score = 102 bits (112), Expect = 7e-17 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || |||| || |||| || | ||| | ||| || || ||||| | ||| || || | Sbjct 59747 CCACCTCGCAGACGCAGTACAAGGTGAAGAGTGGACTCTTTTTGAATGTTGTAGTCAGAC 59688 Query 94841 ATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 | | ||| | ||| |||| |||||||| ||||||| | || || || ||||||| Sbjct 59687 A--GGGTTCGCCCATCTTCCAATTGTTTTCCAGCAAAGATGAGTCGCTGTTGGTCTGGAG 59630 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 | || ||||| ||||| | ||||| || ||||| | | ||||| | | || | Sbjct 59629 GGATGCCTTCCTTGTCCTGGATTTTGGCTTTGACATTCTCAATTGTGTCTGAAGGTTCAA 59570 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || | || ||||| |||||||||||||| || |||||||||||||| Sbjct 59569 CTTCCAAAGTAATGGTCTTTCCAGTAAGAGTCTTAACAAAGATCTGCAT 59521 Score = 96.9 bits (106), Expect = 3e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| ||||| |||||||| ||||||| | || || || |||||||| || ||||| || Sbjct 59904 ATCTTCCAGTTGTTTTCCAGCAAAGATGAGTCGCTGTTGGTCTGGAGGGATGCCTTCCTT 59845 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | ||||| || ||||| | | ||||| | | || || || | || || Sbjct 59844 GTCCTGGATTTTAGCTTTGACATTCTCAATTGTGTCTGAAGGTTCAACTTCCAAAGTAAT 59785 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || |||||||||||||| || |||||||||||||| Sbjct 59784 AGTCTTTCCAGTAAGAGTCTTGACAAAGATCTGCAT 59749 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||||||||||||| |||| || | | |||||| || ||||| || ||||||||| Sbjct 59447 TCTTCCAGCTGTTTTCCAGCAAAAATGAGCCGTTGCTGGTCCGGAGGGATGCCTTCTTTG 59388 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||||| ||||| ||| ||| ||| || | | || || || | || || Sbjct 59387 TCTTGGATTTTCGCCTTTACGTTTTCGATAGTATCTGATGGCTCTACTTCTAAGGTAATC 59328 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || |||||||| ||||| || ||||| Sbjct 59327 GTCTTACCTGTGAGAGTTTTAACAAAAATTTGCAT 59293 >seq4182 Length=188933 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 |||||||| || | |||||| | || || ||||| ||||| || | || || ||| Sbjct 74272 CCTCCTCTTAACCTCAACACAAGATGTAACGTAGACTCCTTCTGAATATTGTAGTCGGAT 74331 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | ||| ||||||||||| || ||||||| || | ||||||||| || ||| Sbjct 74332 AATGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAGATCAAACGTTGCTGATCCGGTGGA 74391 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 ||||||||||| || | |||||| || || || | | ||| || | || || Sbjct 74392 ATACCTTCTTTATCTTGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGCCTCCACC 74451 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | ||||||||||| || ||||| ||||| || || |||||||| Sbjct 74452 TCGAGGGTGATGGTTTTCCCCGTAAGGGTTTTTACGAATATCTGCAT 74498 >seq2492 Length=83244 Score = 114 bits (126), Expect = 1e-20 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || |||||||||| || ||||| || | || ||||| ||||| | || || || Sbjct 40774 CCACCTCTCAATCTCAGTACCAAATGGAGTGTGGATTCTTTTTGGATATTGTAGTCCG-- 40831 Query 94841 ATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 | ||||| || ||| || ||||| |||||| ||||||| | || ||||| ||||| | Sbjct 40832 AGAGTGTGCGACCATCTTCAAGCTGCTTTCCGGCAAAGATGAGCCTCTGCTGGTCTGGTG 40891 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 | ||||| |||||||| | ||||| ||||| || | | |||||| | | || | Sbjct 40892 GGATACCCTCTTTGTCTTGGATTTTGGCCTTAACATTTTCAATAGTGTCCGATGGCTCAA 40951 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | |||| ||||||||||| ||||| | || || || || |||||||| Sbjct 40952 CTTCAAGTGTGATGGTTTTGCCAGTTAAGGTCTTTACGAAAATCTGCAT 41000 Score = 114 bits (126), Expect = 1e-20 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || |||||||||| || ||||| || | || ||||| ||||| | || || || | Sbjct 41002 CCACCTCTCAATCTCAGTACCAAATGGAGTGTGGATTCTTTTTGGATATTGTAGTC--TG 41059 Query 94841 ATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 | ||||| || ||| || ||||| || ||| ||||||| | || ||||| ||||| | Sbjct 41060 AGAGTGTGCGACCATCTTCAAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCTGGTG 41119 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 | ||||| |||||||| | ||||| ||||| || | | |||||| | | || | Sbjct 41120 GGATACCCTCTTTGTCTTGGATTTTGGCCTTAACATTTTCAATAGTGTCTGATGGCTCAA 41179 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | |||| ||||||||||| ||||| | || || || || |||||||| Sbjct 41180 CTTCAAGAGTGATGGTTTTGCCAGTCAAGGTCTTGACGAAAATCTGCAT 41228 Score = 109 bits (120), Expect = 5e-19 Identities = 170/241 (71%), Gaps = 4/241 (2%) Strand=Plus/Plus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || || |||||||||| || ||||| || | || ||||| || || | Sbjct 40306 AAAATTTGCATCCCACCTCTCAATCTCAGTACCAAATGGAGTGTGGATTCTTTCTGGATA 40365 Query 94829 TTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTT 94886 || || || | ||||| || ||| || ||||| || ||| ||||||| | || | Sbjct 40366 TTGTAGTCCG--AGAGTGTGCGACCATCTTCAAGCTGCTTGCCGGCAAAGATGAGCCTCT 40423 Query 94887 GCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGT 94946 |||| ||||| || ||||| |||||||| | ||||| ||||| || | | ||||| Sbjct 40424 GCTGGTCTGGTGGGATACCCTCTTTGTCTTGGATTTTGGCCTTAACATTTTCAATAGTGT 40483 Query 94947 CAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCA 95006 | | | || || |||| ||||||||||| ||||| | || || || || ||||||| Sbjct 40484 CTGATGGCTCAACTTCAAGAGTGATGGTTTTGCCAGTCAAGGTCTTTACGAAAATCTGCA 40543 Query 95007 T 95007 | Sbjct 40544 T 40544 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || |||||||||| || ||||| || | || ||||| ||||| | || || || Sbjct 40546 CCACCTCTCAATCTCAGTACCAAATGGAGTGTGGATTCTTTTTGGATATTGTAGTCCGAG 40605 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | ||| || ||||| || ||| ||||||| | || ||||| ||||| || Sbjct 40606 AGTGTGCGGCCATCTTCAAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCTGGTGGG 40665 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 ||||| |||||||| | ||||| ||||| || | | |||||| | | || || Sbjct 40666 ATACCCTCTTTGTCTTGGATTTTGGCCTTAACATTTTCAATAGTGTCTGAAGGCTCAACT 40725 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| ||||||||||| ||||| | || || || || |||||||| Sbjct 40726 TCAAGAGTGATGGTTTTGCCAGTCAAGGTCTTGACGAAAATCTGCAT 40772 Score = 100 bits (110), Expect = 3e-16 Identities = 166/240 (69%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| | | || || |||||||||| || ||||| || | || ||||| || || | Sbjct 41445 AAAAATCTGCATCCCACCTCTCAATCTCAGTACCAAATGGAGTGTGGATTCTTTCTGGAT 41504 Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887 || || || | ||| | ||| || ||||| || ||| ||||||| | || || Sbjct 41505 ATTGTAGTCCGAGAGTGTGCGGCCATCTTCAAGCTGCTTGCCGGCAAAGATGAGCCTCTG 41564 Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947 ||| ||||| || ||||| |||||||| | |||||| || || || | | ||||| Sbjct 41565 CTGGTCTGGTGGGATACCCTCTTTGTCTTGAATTTTGGCTTTAACATTTTCAATGGTGTC 41624 Query 94948 AGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | | || || |||| ||||||||||| ||||| | || || || || |||||||| Sbjct 41625 TGATGGCTCAACTTCAAGTGTGATGGTTTTGCCAGTTAAGGTCTTGACGAAAATCTGCAT 41684 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || || ||||||| || || || || | ||| ||||| ||||| | || || || Sbjct 40090 CCACCCCTCAATCTCAGTACTAAATGGAGAGTGGATTCTTTTTGGATATTGTAGTCCG-- 40147 Query 94841 ATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 ||||||| | ||| || ||||| || ||| ||||||| | || ||||| ||||| | Sbjct 40148 ATAGTGTGCGGCCATCTTCAAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCTGGTG 40207 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 | ||||| |||||||| | ||||| ||||| || | | ||||| | | || | Sbjct 40208 GGATACCCTCTTTGTCTTGGATTTTAGCCTTAACATTTTCTATGGTGTCTGATGGCTCAA 40267 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | |||| ||||||||||| ||||| | || || || || || ||||| Sbjct 40268 CTTCAAGTGTGATGGTTTTGCCAGTTAAGGTCTTGACGAAAATTTGCAT 40316 >seq387 Length=840652 Score = 86.0 bits (94), Expect = 6e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 94883 CTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACA 94942 || |||||||||||||| || || || || || | ||| || || ||||| | | Sbjct 551546 CTCTGCTGATCTGGAGGGATTCCCTCCTTATCTTGAATCTTAGCTTTGACATTTTCAATT 551487 Query 94943 GTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATC 95002 ||||| | | | ||||| |||| |||||||| || || ||||| || |||||||||||| Sbjct 551486 GTGTCCGAGGGTTCGACCTCAAGAGTGATGGTCTTGCCCGTAAGGGTCTTCACAAAGATC 551427 Query 95003 TGCAT 95007 ||||| Sbjct 551426 TGCAT 551422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448065042693240