Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20nemesis_20[genbank_20GCA_5F002245505.1_202017-08-10] 40,359 sequences; 808,524,533 total letters Query= NC_006634.1 Length=14975 Score E Sequences producing significant alignments: (Bits) Value seq1261 500 8e-138 seq3261 268 9e-68 seq8078 253 2e-63 SEQ20740 217 1e-52 seq600 122 8e-24 SEQ34874 80.6 3e-11 >seq1261 Length=157084 Score = 500 bits (554), Expect = 8e-138 Identities = 478/617 (77%), Gaps = 71/617 (12%) Strand=Plus/Plus Query 14023 AGGTTGAAGATCACACAAACAACCTAATAAAAATTTTAATTGACTTGGCGACAGTTTCGA 14082 ||||| |||||||||||||||| ||||||||||||| | || || | ||| Sbjct 100342 AGGTTAAAGATCACACAAACAAACTAATAAAAATTTCGAGA-ACATG-----ATTTT--- 100392 Query 14083 GAACACGTGA-CGAGTTTTAAGTTCTGACGTAAACGTCGTGTGTCAG---ATAATCAATA 14138 | ||| || |||| |||||| |||||||| |||||||||||| | ||||||| || Sbjct 100393 --AAACGAGAACGAGCTTTAAGATCTGACGTTAACGTCGTGTGTAGGTATATAATCAGTA 100450 Query 14139 GTATAAAACGGACGATTGAGATCGAGGGCTTCAGTGTTCATCGAACATCGGTGCGATCAT 14198 |||| |||||||||||||| ||||||| ||||||||||||| ||||||| |||||||||| Sbjct 100451 GTATGAAACGGACGATTGACATCGAGGACTTCAGTGTTCATAGAACATCTGTGCGATCAT 100510 Query 14199 GTTATTTAGCAAAGCTA----------------CT-----GCAGTAATACTCTTCGCTCT 14237 || | ||||||||||| || | | |||||||||||||||| Sbjct 100511 GTCACGTAGCAAAGCTAAGTAAGTAATAAGTAACTCATAAGTAATAATACTCTTCGCTCT 100570 Query 14238 TATCGGGACCTCTTGTAAGTAAAATAATTTTCTATTTTATTTTCTTCAATGTTAATATAT 14297 ||||||||||||||||||||||||||||||||||||| |||||||| |||| || | | Sbjct 100571 TATCGGGACCTCTTGTAAGTAAAATAATTTTCTATTTCATTTTCTTTAATG---ATGTTT 100627 Query 14298 GTATATTACGCAGGACCGCTCATAGttttttttttAAGGTATTGAGGCATGGCAGGATAG 14357 |||||||||||| | | |||||||||||||| ||||||| ||||||||| ||||| Sbjct 100628 -TATATTACGCAGAATCACTCATAGTTTTTTT----AGGTATTCAGGCATGGCGGGATAT 100682 Query 14358 ATACAGAGAGATTGGTGGATTATTTGACAATGATGACCTGCAGGACATCTTGAACGCCAA 14417 | |||| || |||| |||||||||||| | ||||||||||| ||| |||| |||||||| Sbjct 100683 AGACAGTGATATTGATGGATTATTTGATAGTGATGACCTGCGGGATATCTCCAACGCCAA 100742 Query 14418 CCCGTCGATGCCGGATACCATAACTGTACaaaaaaaTAATGTTTATAACACTCGTCCAAA 14477 | |||||||||| || || |||| ||||||||| ||||||||||||||| ||||| Sbjct 100743 CGCGTCGATGCCAGAGGCCCCAACTATACAAAAAACTAATGTTTATAACACCTATCCAAG 100802 Query 14478 CAACAACGCCATCTATGGATCAATAGTAAAGCAAACGGAACGAGTATATTTACCAGACGA 14537 |||||||| | |||||||||||||||||||| || Sbjct 100803 CAACAACGAC---------------------------GAACGAGTATATTTACCAGAAGA 100835 Query 14538 CCTCAGTAAGCCATTCAGGGTGCGATCGACTACGCGGGTAGAGCCAGGTGGTCCGAACGG 14597 ||||| ||||| |||||||| ||||||||||||| ||| | |||||||||||||||| || Sbjct 100836 CCTCAATAAGCTATTCAGGGAGCGATCGACTACGTGGGCAAAGCCAGGTGGTCCGAATGG 100895 Query 14598 AAATCAAATTTACTACT 14614 ||||||| ||||||||| Sbjct 100896 AAATCAAGTTTACTACT 100912 Score = 426 bits (472), Expect = 1e-115 Identities = 369/453 (81%), Gaps = 33/453 (7%) Strand=Plus/Plus Query 1530 CACACAGTCTA--ATAAACATATGTGTATAAATGTATG-----------ATTGATTACAA 1576 |||| |||||| |||||||| |||||||||||||||| |||||||| || Sbjct 102860 CACATAGTCTATAATAAACATCTGTGTATAAATGTATGTGAATGTATGTATTGATTATAA 102919 Query 1577 TGGTGAAAACCAATATANNNNNNTAATCCAGTACATGAACTCGTATC---GTGGTTTTGC 1633 ||||||| ||||||| | |||||||| || |||||||| | |||||||||| Sbjct 102920 AGGTGAAA-CCAATAT----GTATGATCCAGTATATAAACTCGTACCTATGTGGTTTTGC 102974 Query 1634 TGAGTAGCCCAGAGAGCTGCGGGTAACCTGCGTAATATCAGAAGAGCGTAGTCACCAAGA 1693 |||||||||||||||||| ||| ||||||| ||||||||||||||||| |||||| |||| Sbjct 102975 TGAGTAGCCCAGAGAGCTACGGATAACCTGAGTAATATCAGAAGAGCGCAGTCACTAAGA 103034 Query 1694 ACAACTGAAT-----CTGGATGCTCGCTAATAGGAGGACATCTGCGAAACACCGTCTTTG 1748 |||| |||| |||||| ||||||||||||||||||| |||||||||| ||||||| Sbjct 103035 TCAACCGAATCTGAACTGGATACTCGCTAATAGGAGGACATTTGCGAAACACTGTCTTTG 103094 Query 1749 CCCCCGAATTTTTTGGAGTACTT-ACACAAAGTCAAAATGAAAGTATCCTTCGGCTATGG 1807 |||| ||||||| || ||||| || |||||||||||||||||| ||||| ||||| Sbjct 103095 TCCCCTAATTTTTCAGATTACTTGTCATTGAGTCAAAATGAAAGTATCTTTCGGGTATGG 103154 Query 1808 ACTCGACTTTTGTCCATGCGCATAATAGA-TATTCGCTAAAAATCAGAGTAAATTCTTTG 1866 |||||| |||||||||||||||||||||| ||||||||||||||||||||| ||| || Sbjct 103155 ACTCGATTTTTGTCCATGCGCATAATAGATTATTCGCTAAAAATCAGAGTATATTTGTTC 103214 Query 1867 GA-TA----CACCAACTTCACGGAAGAATAGTTAAGTCTGAGATGTTGAGTACTAGAATA 1921 || || || |||||||||||||||| || ||||||| |||||||| || |||| Sbjct 103215 GAGTAAAATCATTCACTTCACGGAAGAATACTTTTGTCTGAGGTGTTGAGTGCTTTAATA 103274 Query 1922 AAAATCAGTTTTTGACTTAACTAAAGAGCTTAT 1954 |||||||||||||| || | ||||||||| ||| Sbjct 103275 AAAATCAGTTTTTGGCTCACCTAAAGAGCGTAT 103307 Score = 389 bits (430), Expect = 4e-104 Identities = 285/325 (88%), Gaps = 6/325 (2%) Strand=Plus/Plus Query 2124 GTATAGAATATGACCAAATAAAGCTAAAAATTTGATTTTGACTTGGAGATCAGTTGCTAA 2183 |||||||| |||||||||| ||||||||| |||||||| || |||| ||||||||||||| Sbjct 103371 GTATAGAACATGACCAAATGAAGCTAAAA-TTTGATTTCGATTTGGTGATCAGTTGCTAA 103429 Query 2184 GCTGAAACAGTAGTAGATGAGGCCCATATAGGTTTGGACTTGTAAACCTGATTAGGTACC 2243 |||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||||| Sbjct 103430 GCTGAAACAGTAGTAGATAAGGCCCATATAGATTTGGACTTGTAAACCTGAT-AGGTACC 103488 Query 2244 TACTGCCACTAAAGTCAGCAACGACCTCTTGGAAAGTAGATATGGTCACGTGTCAATTCT 2303 |||||||||||||| ||||||||||| |||||||||| |||||||||||||||||||| Sbjct 103489 TACTGCCACTAAAGCTGGCAACGACCTCATGGAAAGTAGGTATGGTCACGTGTCAATTCT 103548 Query 2304 CGAGAATTCGAACATTACACACAAAACCAGTTTTTACTGAGAAATATTGGTCTGCATAGC 2363 |||||||| || ||||||||||||||| | || || | || |||| ||||||||||| Sbjct 103549 AGAGAATTCAAAAATTACACACAAAACC-GGTTATAATCAGGAATACAAGTCTGCATAGC 103607 Query 2364 GATTAACAACTGGTCACGTTGCGTGACCATTCTAGTTGAACTCAGTGGCTTCTTTAGGTA 2423 |||| ||||||||||| ||| ||||||||||||||| || | ||||||||||||| | Sbjct 103608 GATT-GGAACTGGTCACGCTGC--GACCATTCTAGTTGACCTTATTGGCTTCTTTAGGCA 103664 Query 2424 AGAAGAGAGGGGGGTGTGAAATGCC 2448 |||||| ||||||||| ||| ||| Sbjct 103665 AGAAGAAAGGGGGGTGCAAAACGCC 103689 Score = 161 bits (178), Expect = 9e-36 Identities = 126/149 (85%), Gaps = 1/149 (1%) Strand=Plus/Plus Query 4370 TGATAAGCCATTTATGTATTTATGGATAGCGGCAAGTATCTTAATTAGCCTGACTATTAA 4429 |||||| | ||| ||||| |||||||||||||||||||||||||||||| ||| |||| Sbjct 103725 TGATAAATAAATTACGTATTCATGGATAGCGGCAAGTATCTTAATTAGCCTCACTTTTAA 103784 Query 4430 ATTTTTACGACCTAAACCACAAGGAGACC-TTCAGATAACTTTAAGTTATGCATATTTTT 4488 ||||| | ||||||||| | |||| |||| || |||||||||||||| ||| ||||| Sbjct 103785 ATTTTGATGACCTAAACTAGAAGGGGACCTTTAAGATAACTTTAAGTACTGCTGATTTTC 103844 Query 4489 CTCTCTTTTATTGACTAGTTTCAGGAAAC 4517 |||||| ||| ||||||||||||||||| Sbjct 103845 TTCTCTTCTATCGACTAGTTTCAGGAAAC 103873 >seq3261 Length=19281 Score = 268 bits (296), Expect = 9e-68 Identities = 253/329 (77%), Gaps = 25/329 (8%) Strand=Plus/Plus Query 13347 TACAAGTAATGTGGATCGTGTTCATGATCGATGCGTAATAAACAAAGTTT-TTTATCAAA 13405 ||||||||||||| ||||||| ||||||||||||||||| || |||| ||||||| | Sbjct 242 TACAAGTAATGTGAATCGTGTCCATGATCGATGCGTAAT---TAATGTTTATTTATCACA 298 Query 13406 TTTACTGCAAATTATTAATTATCAATATACGCTGATGGGAAGatttattaactattaaca 13465 |||| ||| ||| ||||||| | ||||| ||||| | ||||||||||||||||||||| Sbjct 299 TTTA---CAACTTAATAATTATTACTATACTCTGATAGAAAGATTTATTAACTATTAACA 355 Query 13466 aattaatttattcgaaaacaattatttaatttattaaattctaataaatNNNNNNNNNNN 13525 |||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 356 AATTAATTTATTCGAAGACAATTATTTAATTTATTAAATTCTAATAAATATTTGTTAACA 415 Query 13526 NNNNNNNNNNNNNNNNNTGGGAGGAAAGTATATT--TAGTAAAATAGTTTATAAGTATTT 13583 | | | |||| |||||| |||||||| ||||||||||||||| Sbjct 416 TTCAATAAATATTCATTTTGTA-GAAAATATATTTATAGTAAAACAGTTTATAAGTATTT 474 Query 13584 ATTAATAGTTAACAAATATAGTTATATCTGGCCAGATATAATAAAATCTTTTTATGTCTG 13643 |||||||||||||||||||||| ||||||||||||| || ||| || Sbjct 475 ATTAATAGTTAACAAATATAGT--------------TATAATAAAATCTATTAATGGATG 520 Query 13644 AtttttttttCAACCCATATATAGTTATA 13672 | ||||||||||||||| |||||| |||| Sbjct 521 A-TTTTTTTTCAACCCAGATATAGGTATA 548 Score = 93.3 bits (102), Expect = 4e-15 Identities = 76/91 (84%), Gaps = 1/91 (1%) Strand=Plus/Plus Query 13166 TCGGCGCGCACGGGAACCGAACCTGGGACCTGACGCTTGAGAAACTAATTCATTACCTGT 13225 |||||| || | ||||||||||||||||||| || ||||| | |||||||| |||||| | Sbjct 129 TCGGCGTGCGCAGGAACCGAACCTGGGACCTAACACTTGAAAGACTAATTCCTTACCTCT 188 Query 13226 TTACCAACGAGACTTGCTTG-AAAGAAGAGT 13255 |||||||||| ||| | || |||| ||||| Sbjct 189 TTACCAACGAAGCTTCCATGAAAAGCAGAGT 219 >seq8078 Length=15557 Score = 253 bits (280), Expect = 2e-63 Identities = 199/246 (81%), Gaps = 5/246 (2%) Strand=Plus/Minus Query 13347 TACAAGTAATGTGGATCGTGTTCATGATCGATGCGTAATAAACAAAGTTTTTTATCAAAT 13406 ||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||| Sbjct 3935 TACAAGTAATGTGAATCGTGTCCATGATCGATGCGTAATTAACAAAGTTTTTTATCAAAT 3876 Query 13407 TTACTGCAAATTATTAATTATCAATATACGCTGATGGGAAGatttattaactattaacaa 13466 || |||| ||||||||||| | ||||| ||||| | |||||||||||||||||||||| Sbjct 3875 TT---GCAACTTATTAATTATTACTATACTCTGATAGAAAGATTTATTAACTATTAACAA 3819 Query 13467 attaatttattcgaaaacaattatttaatttattaaattctaataaatNNNNNNNNNNNN 13526 ||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 3818 ATTAATTTATTCGAAGACAATTATTTAATTTATTAAATTCTAATAAATATTTGTTAACAT 3759 Query 13527 NNNNNNNNNNNNNNNNTGGGAGGAAAGT--ATATTTAGTAAAATAGTTTATAAGTATTTA 13584 | |||| ||||| || | ||||||||||||||||||||||||| Sbjct 3758 TCAATAAATATTCATTTTGGAGAAAAGTTCATTTGTAGTAAAATAGTTTATAAGTATTTA 3699 Query 13585 TTAATA 13590 |||||| Sbjct 3698 TTAATA 3693 Score = 118 bits (130), Expect = 1e-22 Identities = 78/85 (92%), Gaps = 1/85 (1%) Strand=Plus/Minus Query 13588 ATAGTTAACAAATATAGTTATATCTGGCCAGATATAATAAAATCTTTTTATGTCTGAttt 13647 |||||||||||||||||||||||||||||||||||||||||| || || ||| ||| || Sbjct 629 ATAGTTAACAAATATAGTTATATCTGGCCAGATATAATAAAAGCTATTAATGGATGA-TT 571 Query 13648 ttttttCAACCCATATATAGTTATA 13672 ||||||||||||| ||||||||||| Sbjct 570 TTTTTTCAACCCAGATATAGTTATA 546 Score = 78.8 bits (86), Expect = 9e-11 Identities = 51/56 (91%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 13292 GCAGATCTGGCCAGATCTGTTTATATATGGCCAGATCTAATCTATTTTTCCCGGGT 13347 ||||||||| ||||||| |||||| ||||||||||||||||| |||||||||||| Sbjct 4202 GCAGATCTGACCAGATCGGTTTATGTATGGCCAGATCTAATCCGTTTTTCCCGGGT 4257 >SEQ20740 Length=2826 Score = 217 bits (240), Expect = 1e-52 Identities = 174/219 (79%), Gaps = 5/219 (2%) Strand=Plus/Minus Query 13459 attaacaaattaatttattcgaaaacaattatttaatttattaaattctaataaatNNNN 13518 ||||||||||||||||||||||| ||||||||||||||||||||||||||||| || Sbjct 2325 ATTAACAAATTAATTTATTCGAAGACAATTATTTAATTTATTAAATTCTAATAGATATTT 2266 Query 13519 NNNNNNNNNNNNNNNNNNNNNNNNTGGGAGGAAAGTATATT-----TAGTAAAATAGTTT 13573 | |||| |||||||||| |||||||||||||| Sbjct 2265 GTTAACATTCAATAAATATTCATTTTGGAGAAAAGTATATTATTATTAGTAAAATAGTTT 2206 Query 13574 ATAAGTATTTATTAATAGTTAACAAATATAGTTATATCTGGCCAGATATAATAAAATCTT 13633 ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2205 ATAGGTATTTATTAATAGTTAACAAATATAGTTATATCTGGCCAGATATAATAAAATCTA 2146 Query 13634 TTTATGTCTGAtttttttttCAACCCATATATAGTTATA 13672 || ||| |||| |||||||||||||| |||| |||||| Sbjct 2145 TTAATGGATGATATTTTTTTCAACCCAGATATGGTTATA 2107 >seq600 Length=1111 Score = 122 bits (134), Expect = 8e-24 Identities = 85/93 (91%), Gaps = 4/93 (4%) Strand=Plus/Minus Query 13546 GAGGAAAGTATATTTA--GTAAAATAGTTTATAAGTATTTATTAATAGTTAACAAATATA 13603 ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 567 GAGAAAAGTATATTTATAGTAAAATAGTTTATAAGTATTTATTAATAGTTAACAAATATA 508 Query 13604 GTTAT-ATCTGGCCAGATATAATAAAATCTTTT 13635 ||||| || | |||||||||||||||||| || Sbjct 507 GTTATTATATA-CCAGATATAATAAAATCTATT 476 >SEQ34874 Length=1816 Score = 80.6 bits (88), Expect = 3e-11 Identities = 63/75 (84%), Gaps = 3/75 (4%) Strand=Plus/Plus Query 13388 ACAAAGTTTTTTATCAAATTTACTGCAAATTATTAATTATCAATATACGCTGATGGGAAG 13447 |||| ||||||||||||||| |||| ||||||||||| | ||||| ||||| | ||| Sbjct 1527 ACAACGTTTTTTATCAAATTC---GCAACTTATTAATTATTACTATACTCTGATAGAAAG 1583 Query 13448 atttattaactatta 13462 |||||||||||| || Sbjct 1584 ATTTATTAACTACTA 1598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 47779293338546