Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20nemesis_20[genbank_20GCA_5F002245505.1_202017-08-10] 40,359 sequences; 808,524,533 total letters Query= NC_006637.1 Length=14489 Score E Sequences producing significant alignments: (Bits) Value seq2222 232 6e-57 seq1848 199 4e-47 SEQ10057 96.9 3e-16 SEQ38003 95.1 1e-15 SEQ38083 93.3 4e-15 seq6970 84.2 2e-12 >seq2222 Length=174721 Score = 232 bits (256), Expect = 6e-57 Identities = 287/393 (73%), Gaps = 25/393 (6%) Strand=Plus/Minus Query 5648 ATCCACAGATTCGGTAAAATCTGGCGCCAAGTTCCGTTCAAATCCGTTGTCAACGGAGCG 5707 ||| ||||| |||||| ||||||||||||| |||||||| |||| | Sbjct 171102 ATCAACAGAATCGGTAGAATCTGGCGCCAATTTCCGTTC----------TCAA------G 171059 Query 5708 CCAGACTACCGACTGTGTTTA------CTGTAAGCAGAACGGTATTTTGAGGTTGCAAAA 5761 |||||||||||| ||||| || | |||| ||||||||| |||||||||| |||| Sbjct 171058 CCAGACTACCGAGTGTGTATATATATACCGTAAACAGAACGGTTTTTTGAGGTTACAAAT 170999 Query 5762 TTTTATTTAATTCTACGGTACttttttttCCTAAATTGTGTATTATAACAGTAATTCATA 5821 |||| || || | || | |||||||| || | | | |||||| |||| ||||| Sbjct 170998 TTTTTTTCAAATTTAATTTGATTTTTTTTTGTA--TGATATTTTATAATAGTAGTTCATG 170941 Query 5822 CTTTATTTTACTGTTATTAATTAATTATATTCACTTATAACAATTAATCTATACTTGAAA 5881 || | | |||| ||||| || ||||| ||| ||||| || ||| |||| || ||| Sbjct 170940 CTCTTTATTACGCGTATTACTTGATTATTATCAATTATATTTAT-AATTTATATTTAAAA 170882 Query 5882 TTACTAAATTTAATCAGCACAAACTATAGCAACGCAAAAATTTCGATCCTGACttttttt 5941 ||| || | |||||||||||||||||||| || || | ||| ||| | |||||||| Sbjct 170881 TTATTATAAATAATCAGCACAAACTATAGCGACTCAGATTTTTAGATTTTAACTTTTTTC 170822 Query 5942 CGATGGGCAAAGTGATCTGCCACAGACTAAATAATTCGAGAATGCATAGTAATCCTTCAT 6001 ||| |||||| | |||| |||||||||| | || |||||| ||||| | | Sbjct 170821 TTATGTAAAAAGTGGACGGCCAGAGACTAAATACTATAAGGATGCATGCTAATCTTATAA 170762 Query 6002 TAGATGGGAAACTACAGTTaaaaaaaGATATTT 6034 |||||||||||||||||| |||||||||||||| Sbjct 170761 TAGATGGGAAACTACAGTGAAAAAAAGATATTT 170729 Score = 102 bits (112), Expect = 8e-18 Identities = 92/114 (81%), Gaps = 5/114 (4%) Strand=Plus/Minus Query 8845 TGGTGTGCGTCATATTGTG--TATTTCAATTTTTT---AAAGTCCTAGTAAATAGATTTT 8899 ||||||||||||| ||| || |||| |||||| ||||||||| || | ||||||| Sbjct 170183 TGGTGTGCGTCATTGTGTACCTACTTCAGTTTTTTTTTAAAGTCCTACTAGAAAGATTTT 170124 Query 8900 ACGAATTTAGTTAAAAGTAAAATATTTTGCAACCGCGCACACTAAATACGTTCC 8953 | |||||| | |||||| ||| |||| | |||| ||||||||||||||||||| Sbjct 170123 AGGAATTTCATAAAAAGTGAAAAATTTCGTAACCACGCACACTAAATACGTTCC 170070 Score = 93.3 bits (102), Expect = 4e-15 Identities = 62/68 (91%), Gaps = 1/68 (1%) Strand=Plus/Plus Query 7542 aatccgaacaaaaacagtttcactgtaaaaaaa-tCGCGACAAGTCCACGTTCATAAGAC 7600 |||| |||||||||||||||||||||||||||| | ||| ||||||||||||||||| || Sbjct 169840 AATCTGAACAAAAACAGTTTCACTGTAAAAAAAATTGCGCCAAGTCCACGTTCATAAAAC 169899 Query 7601 TATTAAGA 7608 ||||| || Sbjct 169900 TATTAGGA 169907 Score = 89.7 bits (98), Expect = 5e-14 Identities = 59/64 (92%), Gaps = 1/64 (2%) Strand=Plus/Minus Query 9107 TAATAGTCTTATGAACGTAGACTTGGCGCGAttttttt-ACAGTGAAACTGTTTTTGTTC 9165 ||||||| |||||||||| |||||||||| |||||||| ||||||||||||||||||||| Sbjct 169904 TAATAGTTTTATGAACGTGGACTTGGCGCAATTTTTTTTACAGTGAAACTGTTTTTGTTC 169845 Query 9166 GGAT 9169 ||| Sbjct 169844 AGAT 169841 >seq1848 Length=818965 Score = 199 bits (220), Expect = 4e-47 Identities = 281/392 (72%), Gaps = 27/392 (7%) Strand=Plus/Plus Query 5648 ATCCACAGATTCGGTAAAATCTGGCGCCAAGTTCCGTTCAAATCCGTTGTCAACGGAGCG 5707 ||| |||||||||||| ||||||||||||| |||||||| |||| | Sbjct 19609 ATCAACAGATTCGGTAGAATCTGGCGCCAATTTCCGTTC----------TCAA------G 19652 Query 5708 CCAGACTACCGACTGTGTTTA----CTGTAAGCAGAACGGTATTTTGAGGTTGCAAAATT 5763 |||||||||||| ||||| || | |||||||||||||| | |||||||| ||| || Sbjct 19653 CCAGACTACCGAGTGTGTATATATACCGTAAGCAGAACGGTTTATTGAGGTTACAATTTT 19712 Query 5764 TTATTT-AATTCTACGGTACttttttttCCTAAATTGTGTATTATAACAGTAATTCATAC 5822 || ||| || | || | |||||||| || | | |||||| |||| || || | Sbjct 19713 TTTTTTTAAATTTAAATTGTTTTTTTTTGT---ATGATATTTTATAATAGTAGTTTATGC 19769 Query 5823 TTTATTTTACTGTTATTAATTAATTATATTCACTTATAACAATTAATCTATACTTGAAAT 5882 | | | |||| ||||| | ||||| ||| |||| || ||| | || || |||| Sbjct 19770 TCTTTATTACGCGTATTA--TGATTATTATCAATTATCTTTAT-AATTTCTATTTAAAAT 19826 Query 5883 TACTAAATTTAATCAGCACAAACTATAGCAACGCAAAAATTTCGATCCTGACtttttttC 5942 || || | |||||||||||||||||||| || |||| ||| ||| | |||||||| Sbjct 19827 TATTATAAATAATCAGCACAAACTATAGCGACTCAAATTTTTAGATTTTAACTTTTTTCT 19886 Query 5943 GATGGGCAAAGTGATCTGCCACAGACTAAATAATTCGAGAATGCATAGTAATCCTTCATT 6002 ||| |||||| | |||| |||||||||| | || |||||| ||||| | | | Sbjct 19887 TATGTAAAAAGTGGACAGCCAGAGACTAAATACTATAAGGATGCATGCTAATCTTATAAT 19946 Query 6003 AGATGGGAAACTACAGTTaaaaaaaGATATTT 6034 | ||||||||||||||| | ||||||||| || Sbjct 19947 AAATGGGAAACTACAGTGATAAAAAGATAGTT 19978 Score = 134 bits (148), Expect = 1e-27 Identities = 88/96 (92%), Gaps = 1/96 (1%) Strand=Plus/Plus Query 7514 TTTTTATTaaaattacaaaaaatactaaaatccgaacaaaaacagtttcactgtaaaaaa 7573 ||||||| | |||||||||||||||| ||||||||| |||| |||||||||||||||||| Sbjct 20218 TTTTTATCATAATTACAAAAAATACTGAAATCCGAATAAAAGCAGTTTCACTGTAAAAAA 20277 Query 7574 a-tCGCGACAAGTCCACGTTCATAAGACTATTAAGA 7608 | ||||| ||||||||||||||||||||||||||| Sbjct 20278 AATCGCGCTAAGTCCACGTTCATAAGACTATTAAGA 20313 Score = 98.7 bits (108), Expect = 9e-17 Identities = 70/78 (90%), Gaps = 2/78 (3%) Strand=Plus/Minus Query 9105 CTTAATAGTCTTATGAACGTAGACTTGGCGCGA-tttttttACAGTGAAACTGTTTTTGT 9163 |||||||||||||||||||| ||||| |||||| ||||||||||||||||||| |||| | Sbjct 20312 CTTAATAGTCTTATGAACGTGGACTTAGCGCGATTTTTTTTACAGTGAAACTGCTTTTAT 20253 Query 9164 TCGGATCT-AGTATATTT 9180 |||||| | ||||| ||| Sbjct 20252 TCGGATTTCAGTATTTTT 20235 >SEQ10057 Length=1988 Score = 96.9 bits (106), Expect = 3e-16 Identities = 87/107 (81%), Gaps = 3/107 (3%) Strand=Plus/Minus Query 12191 TATGTATTATATCTATATACTTATTATAC-AAACACAGCATGTACTATACCACTGAACCT 12249 |||||||||| |||||| |||||| |||| ||| |||||| ||||||| ||| ||||| Sbjct 1566 TATGTATTATGTCTATACACTTATCATACTAAAAACAGCACATACTATATCACGGAACCC 1507 Query 12250 T--AAATAGCACCACGGTGATACAAAATTAGAATCATAtttttttCC 12294 |||| ||| | | |||||||||||||||||| | ||||||||| Sbjct 1506 ACAAAATGGCATCGCTGTGATACAAAATTAGAATAACTTTTTTTTCC 1460 >SEQ38003 Length=409876 Score = 95.1 bits (104), Expect = 1e-15 Identities = 92/116 (79%), Gaps = 3/116 (3%) Strand=Plus/Minus Query 12191 TATGTATTATATCTATATACTTATTATAC-AAACACAGCATGTACTATACCACTGAACC- 12248 |||||||||| |||||| ||||||||||| ||| |||||| ||||||| ||| ||||| Sbjct 128888 TATGTATTATGTCTATACACTTATTATACTAAAAACAGCACATACTATATCACGGAACCC 128829 Query 12249 -TTAAATAGCACCACGGTGATACAAAATTAGAATCATAtttttttCCGCGTGATAA 12303 |||| | ||| | |||||| ||||||||||| |||||||| | || |||| Sbjct 128828 ACAAAATGGGACCGCTGTGATAAAAAATTAGAATATCTTTTTTTTCTGTGTAATAA 128773 >SEQ38083 Length=1906 Score = 93.3 bits (102), Expect = 4e-15 Identities = 95/122 (78%), Gaps = 3/122 (2%) Strand=Plus/Plus Query 13400 AATTAGTACTTACATGAGGTTGCAATGAGCGCAGCGAGCACAA-AAC--CTACTTTGCCG 13456 |||| ||||||||||||||| |||| | | |||||||| || ||| || ||||| Sbjct 1422 AATTTTTACTTACATGAGGTTCCAATTAACATAGCGAGCAAAACAACTAATAGTTTGCTA 1481 Query 13457 AACATCTTGTCGAAGCTGCTGAGATTCAACTGTGAAGTTCCTAATTCTGGTTCGGCTTTT 13516 ||||| ||||| ||||| |||||| |||||| ||||||| ||||||| || | |||| Sbjct 1482 AACATTTTGTCAGAGCTGTTGAGATATAACTGTAAAGTTCCCGATTCTGGCTCTGATTTT 1541 Query 13517 AT 13518 || Sbjct 1542 AT 1543 >seq6970 Length=37710 Score = 84.2 bits (92), Expect = 2e-12 Identities = 83/104 (80%), Gaps = 4/104 (4%) Strand=Plus/Minus Query 12191 TATGTATTATATCTATATACTTATTATAC-AAACACAGCATGTACTATACCACTGAACC- 12248 |||||||||| |||||| ||||||||||| ||| |||||| ||||||| ||| |||| Sbjct 24305 TATGTATTATGTCTATACACTTATTATACTAAAAACAGCACATACTATATCACAAAACCC 24246 Query 12249 -TTAAATAGCACCACGGTGATACAAAATTAGAATCATAtttttt 12291 |||| ||||| | ||||||||||||| ||| | |||||| Sbjct 24245 ACAAAATGGCACCGCAATGATACAAAATTATAAT-AGCTTTTTT 24203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 46224819074084