Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20nemesis_20[genbank_20GCA_5F002245505.1_202017-08-10] 40,359 sequences; 808,524,533 total letters Query= NC_006640.1 Length=5032 Score E Sequences producing significant alignments: (Bits) Value seq2222 96.9 1e-16 seq1848 91.5 5e-15 >seq2222 Length=174721 Score = 96.9 bits (106), Expect = 1e-16 Identities = 129/181 (71%), Gaps = 24/181 (13%) Strand=Plus/Minus Query 119 TCCACAGATTCGGTAGAATCTGGCGCCAAGTTCCGTTCAAATCCGTTGTCAACGGAGCGC 178 || ||||| |||||||||||||||||||| |||||||| |||| || Sbjct 171101 TCAACAGAATCGGTAGAATCTGGCGCCAATTTCCGTTC----------TCAA------GC 171058 Query 179 CAGACTACCGACTGTG------TTTACTGTAAGCAGAACGGTATTTTGAGGTTGCAAAAT 232 ||||||||||| |||| | ||| |||| ||||||||| |||||||||| |||| | Sbjct 171057 CAGACTACCGAGTGTGTATATATATACCGTAAACAGAACGGTTTTTTGAGGTTACAAATT 170998 Query 233 TTTATTTAATTCTACGGTACTTTGTTTTCCTAAATTGTATATTATAACAGTAATTCATAC 292 ||| || || | || | ||| |||| | || ||| |||||| |||| ||||| | Sbjct 170997 TTTTTTCAAATTTAATTTGATTTTTTTT--TGTATGATATTTTATAATAGTAGTTCATGC 170940 Query 293 T 293 | Sbjct 170939 T 170939 >seq1848 Length=818965 Score = 91.5 bits (100), Expect = 5e-15 Identities = 94/125 (75%), Gaps = 20/125 (16%) Strand=Plus/Plus Query 119 TCCACAGATTCGGTAGAATCTGGCGCCAAGTTCCGTTCAAATCCGTTGTCAACGGAGCGC 178 || |||||||||||||||||||||||||| |||||||| |||| || Sbjct 19610 TCAACAGATTCGGTAGAATCTGGCGCCAATTTCCGTTC----------TCAA------GC 19653 Query 179 CAGACTACCGACTGTGTTTA----CTGTAAGCAGAACGGTATTTTGAGGTTGCAAAATTT 234 ||||||||||| ||||| || | |||||||||||||| | |||||||| ||| ||| Sbjct 19654 CAGACTACCGAGTGTGTATATATACCGTAAGCAGAACGGTTTATTGAGGTTACAATTTTT 19713 Query 235 TATTT 239 | ||| Sbjct 19714 TTTTT 19718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15983341412695