Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20nemesis_20[genbank_20GCA_5F002245505.1_202017-08-10] 40,359 sequences; 808,524,533 total letters Query= NC_006644.1 Length=16103 Score E Sequences producing significant alignments: (Bits) Value seq2955 1031 0.0 seq4013 159 4e-35 seq99 129 6e-26 seq2222 82.4 8e-12 >seq2955 Length=45615 Score = 1031 bits (1142), Expect = 0.0 Identities = 713/812 (88%), Gaps = 44/812 (5%) Strand=Plus/Plus Query 3423 TTAAGTCTGTTGTTTCTTTTGATACGCTGATCTTTAATAGATAATGTATGCTAATGATGT 3482 |||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||| Sbjct 13837 TTAAGTCTGTTGTTTCTTTT-ATACGCTGACCTTTAAGAGATAATGTATGCTAATGATGT 13895 Query 3483 CACCCTGTGAGGCACATGAAGCGATAGCGGAACTGAACACTACGCTTTTGATTAGAAACA 3542 || ||||| ||| |||||||||||||| |||||| || |||||||||||||||||||||| Sbjct 13896 CATCCTGTAAGGTACATGAAGCGATAGTGGAACTAAATACTACGCTTTTGATTAGAAACA 13955 Query 3543 TCGATTATTGTTTTCAAGTTGACAGGGATAGCAATTATTCATCAAGAATTTTCCATTGAT 3602 ||||||||||||||| |||||||||||||||||||||||||| |||||||| | ||| | Sbjct 13956 TCGATTATTGTTTTCGAGTTGACAGGGATAGCAATTATTCATTAAGAATTTCCTATTAAC 14015 Query 3603 TGTTCCTCTTTTCAAATGATGCGCA---TGTGTATTTTTGATTACTGTACACCAAAAAA- 3658 |||| || |||| |||||||||||| |||||||||||||||||||||||| |||||| Sbjct 14016 TGTTACTTTTTTTAAATGATGCGCACCATGTGTATTTTTGATTACTGTACACGAAAAAAA 14075 Query 3659 TAGAAATTTTTGCCATTTTTCTATAAGAGATATTTATATGTTGGTAAGAAAAATTTAATT 3718 || ||||||||||||||||||| || |||||||||||||||||||||||||||||||| | Sbjct 14076 TATAAATTTTTGCCATTTTTCTTTATGAGATATTTATATGTTGGTAAGAAAAATTTAACT 14135 Query 3719 ATGTATATAGTCAATTTTGCTAGATCAGCATAGAAATTATCCCTCTGTAAAAGTGGTAAA 3778 ||||| ||||||||||||||||||||||||||| || | || |||||||||| |||| Sbjct 14136 ATGTAGATAGTCAATTTTGCTAGATCAGCATAGCAACTGTCG---TGTAAAAGTGTTAAA 14192 Query 3779 AATTTTGAATGTAtttttttCCGTTGTTCGAAAATCAATCTCATATAGACCATTATTATT 3838 |||||||||||||||||||| ||||||||||||||||||||| || ||| ||||||| Sbjct 14193 AATTTTGAATGTATTTTTTTTCGTTGTTCGAAAATCAATCTCCTAAAGATTATTATTACC 14252 Query 3839 GGCGTCATTAATGTAATGCCTTTTATACAAAACCCTGTCAACTTTCGCTTATTTATTTCG 3898 ||||||||||||||| | |||||||||||||||||||||||||||| ||||||| ||| Sbjct 14253 GGCGTCATTAATGTAGTCCCTTTTATACAAAACCCTGTCAACTTTCACTTATTT---TCG 14309 Query 3899 CTTACTCTGATTTTAGTCATGATGTTATTTAGTTAATTATAAGCCAGAACAATAAAGTAC 3958 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 14310 CTTACTCTGATTTTAGTCATGGTGTTATTTAGTTAATTATAAGCCAGAACAATAAAGTAC 14369 Query 3959 AAAAATCGATGTATTGAATTGCGGTTCTCAGAGATGATCACAATCACAGAGTAAAATCGT 4018 |||||||||||||||||| |||| |||||||||||| |||||| ||| |||||||||||| Sbjct 14370 AAAAATCGATGTATTGAAATGCGATTCTCAGAGATGTTCACAAGCACTGAGTAAAATCGT 14429 Query 4019 AACATTTTAGTTTTAAAGCTTGACAATTTTTCGGTATGTATTTTATGAGATTACATAGAA 4078 ||||| |||||||||||| |||||||||||| ||||| |||||||||||||||||||| Sbjct 14430 AACATATTAGTTTTAAAGGTTGACAATTTTTGGGTATACATTTTATGAGATTACATAGAG 14489 Query 4079 CCATCAGTTTTGGATACTAGCTTTCCATTAAGATAATAACTTGTTGAGTACTAAGTAAGG 4138 ||||||||||||||||||||||||||||||| ||||||||| Sbjct 14490 CCATCAGTTTTGGATACTAGCTTTCCATTAAAATAATAACT------------------- 14530 Query 4139 TCACAATTGTTCCGTACGTTTCTAAAGATACTTCAATTCATTCATAGTAAAACTGGTCCT 4198 ||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 14531 --------------TACGTTTCTAAAGATACTTTAATTCATTCATAGTAAAACTGGTCCT 14576 Query 4199 TGTATACGACAAATTTTTGTAAAACGAGTTTA 4230 ||||||||| | |||||| ||||||||||||| Sbjct 14577 TGTATACGAGACATTTTTCTAAAACGAGTTTA 14608 Score = 506 bits (560), Expect = 2e-139 Identities = 331/362 (91%), Gaps = 6/362 (2%) Strand=Plus/Plus Query 7856 GACCAGTTGGAAGATATTATTTACGAGATAATCGATGAAT-TTGGAGATGTTATAATACG 7914 ||| |||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||| Sbjct 14924 GACTAGTTGGAAGATATTATTTACAAGAGAATCGATGAATGTTGGAGATGTTATAATACG 14983 Query 7915 CTGGGTGGAATAATATTTTCAATAAGTGGTGTAAAAACCATGATAGCTAATTATAAAAGT 7974 |||||||||||||||||| ||||||| |||||| |||||||||||||||||||||||||| Sbjct 14984 CTGGGTGGAATAATATTTACAATAAGAGGTGTAGAAACCATGATAGCTAATTATAAAAGT 15043 Query 7975 CAATTTTGGTTTCGTCGAATCAATGATGTCCAGAGCGAGCCTAACAGACATTACTTCATG 8034 |||||||||||||||| || |||| ||| |||| ||||||||||||| ||||| ||||| Sbjct 15044 CAATTTTGGTTTCGTCAAAACAATCATGCTCAGAACGAGCCTAACAGAAATTACCTCATG 15103 Query 8035 CTGTATTTGAATTGGAAAATAATATAGACTCATGAGTGTAATTATACTTTGCAGTG---A 8091 ||||||||||||||| ||||||||||||||||||| |||||| ||||||| |||| | Sbjct 15104 CTGTATTTGAATTGGGAAATAATATAGACTCATGA--GTAATTGTACTTTGTAGTGAGAA 15161 Query 8092 GAAGTTATATTTTTTGCGAAAAAGAAGAGTTATTTTTACTGATGATTTTATACTAATACT 8151 ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 15162 GAAGTTAATTTTTTTGCGAAAAAGAAAAGTTATTTTTACTGATGATTTTATACTAATACT 15221 Query 8152 GAGAGCTCAGGACACTGTTATCAAGTGTTATTGAAAATCCTACTAAATTGAAATAAACTA 8211 |||| |||||||||||||||| ||||||||||||||| ||||||| |||||||| ||||| Sbjct 15222 GAGAACTCAGGACACTGTTATGAAGTGTTATTGAAAACCCTACTACATTGAAATCAACTA 15281 Query 8212 TG 8213 || Sbjct 15282 TG 15283 Score = 291 bits (322), Expect = 8e-75 Identities = 185/201 (92%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 3227 TATATATTGTAAAAATAATAAGTGaaaaaaaCTTCTTAATTTAAAACGTACGTACTTATT 3286 || ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| Sbjct 12990 TAGATATTGTAAAAATAAAAAGTGAAAAAATCTTCTTAATTTAAAACGTACGTACTTATT 13049 Query 3287 TTCATTTAAAAAATCTATGTACCAACCTCTTTGTAAATATTCACTCAGCCCAATACAATA 3346 |||||||| ||||||||||||| ||||||||||||||||||||||||||||||| || | Sbjct 13050 TTCATTTATAAAATCTATGTACTTACCTCTTTGTAAATATTCACTCAGCCCAATATAAAA 13109 Query 3347 ATAATGAATTTTCACACAATAGACGTCTAAACACTATCGGAACGAGCACGGAACTAGCAT 3406 ||||||||||| |||||||||||||| |||||||| |||||||| || ||||||||||| Sbjct 13110 ATAATGAATTTGCACACAATAGACGTTTAAACACTGTCGGAACGGTCATGGAACTAGCAT 13169 Query 3407 TGATTTAATTCAATGTTTAAG 3427 ||||||| ||| ||||||||| Sbjct 13170 TGATTTATTTCGATGTTTAAG 13190 Score = 244 bits (270), Expect = 1e-60 Identities = 221/288 (77%), Gaps = 50/288 (17%) Strand=Plus/Plus Query 15399 CCAGTAACGCTTTTGAAATCGAAAACTAAGGGACATTAACTATTGTGGTCCATGAATAAT 15458 ||||||| |||||||||||||||| ||||||||||||||||||||||||||| Sbjct 7619 CCAGTAATGCTTTTGAAATCGAAATTTAAGGGACATTAACTATTGTGGTCCAT------- 7671 Query 15459 TCCTTTTCTACAGTAATTGTTGTAATGGTTTCAGATTGGGGTATTCAATATATTGTTATA 15518 || ||||||||||||||||| | Sbjct 7672 -------------------------TG---------TGGGGTATTCAATATAT------A 7691 Query 15519 AATAAAACATTGTTCAtttttttAATTCATTATTTAAAAAGCTATAACTTCAAAAAATTC 15578 |||||||| ||||| ||||||| |||||||||||| ||||| | ||||| ||||||||| Sbjct 7692 AATAAAACTTTGTTAATTTTTTAAATTCATTATTTGAAAAGTCACAACTTTAAAAAATTC 7751 Query 15579 ATTAACAACTAATTAACTCTTTACACATGTCTTATACATAATTGAAAACTTATTATAATT 15638 || ||| ||||||| ||||||||||| |||||||||||||||||||||||||| |||| Sbjct 7752 ATAAAC---TAATTAAATCTTTACACATATCTTATACATAATTGAAAACTTATTACAATT 7808 Query 15639 CATTGCATAAGAAACTATGACAGTCATTAATATTCTATTTACGTAGAG 15686 || ||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 7809 CACTGCATAAGAAACTATGACAGTCATTGATATTCTATTTACGTAGAG 7856 >seq4013 Length=136960 Score = 159 bits (176), Expect = 4e-35 Identities = 112/128 (88%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 2020 AGTCCTGTTAAAAAACTTGGTATTCTCAGATTTAAAATACCAGTTTTCTTAAATCTAAAA 2079 ||| | | ||||||||||||||||||||| ||||||||| |||| ||||||||||||||| Sbjct 31625 AGTTCCGCTAAAAAACTTGGTATTCTCAGGTTTAAAATATCAGTATTCTTAAATCTAAAA 31684 Query 2080 TATTTAACTTGACTTTTACTGCGTACAAGAAAACTCGACTAAAAAATATTCAGTATTCCG 2139 |||||| |||||||||| |||||||| ||| |||| |||||||| ||||| |||||| Sbjct 31685 TATTTATCTTGACTTTTGGTGCGTACAGGAATACTCAACTAAAAATTATTCTGTATTCTC 31744 Query 2140 GGTATAAA 2147 |||||||| Sbjct 31745 GGTATAAA 31752 >seq99 Length=207983 Score = 129 bits (142), Expect = 6e-26 Identities = 108/132 (82%), Gaps = 8/132 (6%) Strand=Plus/Plus Query 193 TTAATAAACattatatttgaattataaattttaagataattggttttttgagaacatttt 252 ||||||| || || ||||||| ||||||||||| ||||||||||| | ||||| Sbjct 140698 TTAATAATTATAATTTTTGAATAATAAATTTTAAAATAATTGGTTTGT-GAGAA------ 140750 Query 253 atttttttaattaGAATAAAATTGTAAGTATCAAACAACTAGGCCAGTAAAAATAACTGG 312 ||||||| ||||||||||||||| || | |||||||||||||||||| | ||||||| Sbjct 140751 -TTTTTTTTATTAGAATAAAATTGCAAATGTCAAACAACTAGGCCAGTGTGAGTAACTGG 140809 Query 313 GTCTTTTACCTT 324 | |||||||||| Sbjct 140810 GACTTTTACCTT 140821 >seq2222 Length=174721 Score = 82.4 bits (90), Expect = 8e-12 Identities = 51/54 (94%), Gaps = 2/54 (4%) Strand=Plus/Minus Query 8555 TGAACGTGGACTTGGCGCAATTTTTT--ACAGTGAAACTGTTTTTGTTCGGATT 8606 |||||||||||||||||||||||||| ||||||||||||||||||||| |||| Sbjct 169893 TGAACGTGGACTTGGCGCAATTTTTTTTACAGTGAAACTGTTTTTGTTCAGATT 169840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 51387208915322