Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20nemesis_20[genbank_20GCA_5F002245505.1_202017-08-10] 40,359 sequences; 808,524,533 total letters Query= NC_006653.1 Length=26062 Score E Sequences producing significant alignments: (Bits) Value seq2222 459 4e-125 seq1848 437 1e-118 seq272 293 4e-75 seq1562 109 9e-20 seq1774 95.1 2e-15 seq3471 93.3 7e-15 >seq2222 Length=174721 Score = 459 bits (508), Expect = 4e-125 Identities = 326/384 (85%), Gaps = 8/384 (2%) Strand=Plus/Minus Query 21495 TTTTACATCAACAGATTCGGTAGAATCTGGCGCCAAGTTCCGTTCTCTAGCCAGACTACC 21554 ||| | ||||||||| |||||||||||||||||||| |||||||||| |||||||||||| Sbjct 171108 TTTCAAATCAACAGAATCGGTAGAATCTGGCGCCAATTTCCGTTCTCAAGCCAGACTACC 171049 Query 21555 GAGTGTGTATATA----CCGTAAGCAGAACGGTTTTTTGAGGTTACANNNNNNNNNNNNN 21610 ||||||||||||| |||||| ||||||||||||||||||||||| Sbjct 171048 GAGTGTGTATATATATACCGTAAACAGAACGGTTTTTTGAGGTTACAAATTTTTTTTCAA 170989 Query 21611 NNNNNNNNNNNNNNNNNNNNATATGATATTTTATAATAGTAGTTCATGCTTTTTATTACG 21670 ||||||||||||||||||||||||||||| ||||||||| Sbjct 170988 ATTTAATTTGATTTTTTTTTGTATGATATTTTATAATAGTAGTTCATGCTCTTTATTACG 170929 Query 21671 CGTATTACTTGATTATTATCAATTATCTTTATAATTTCTATTTAAAAATATTAAAAATAA 21730 |||||||||||||||||||||||||| |||||||||| ||||||||| ||||| |||||| Sbjct 170928 CGTATTACTTGATTATTATCAATTATATTTATAATTTATATTTAAAATTATTATAAATAA 170869 Query 21731 TCAGCACAAACTATAGCGATCCAGAtttttagattttaacttttttGTTATGTAAAAAGC 21790 ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| Sbjct 170868 TCAGCACAAACTATAGCGACTCAGATTTTTAGATTTTAACTTTTTTCTTATGTAAAAAGT 170809 Query 21791 GGACGGCCAGAGACTAAATAATATAAGGATGCATGCTAATCTTATAATAGATGGGAAAGA 21850 |||||||||||||||||||| ||||||||||||||||||||||||||||||||| || Sbjct 170808 GGACGGCCAGAGACTAAATACTATAAGGATGCATGCTAATCTTATAATAGATGG----GA 170753 Query 21851 AACTACAGTGaaaaaaaGATATTT 21874 |||||||||||||||||||||||| Sbjct 170752 AACTACAGTGAAAAAAAGATATTT 170729 Score = 257 bits (284), Expect = 3e-64 Identities = 174/194 (90%), Gaps = 11/194 (6%) Strand=Plus/Minus Query 21873 TTGACAGCTTGCAATTACACACGCCAGGCGGCGCAAGAATAACTTTTACATGAACTATAG 21932 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 170537 TTGACAGCTTGCAATTACACACGCCAGGCAGCGCAAGAATAACTTTTACATGAACTATAG 170478 Query 21933 CTTAAAGGGGATAGTTTGCCACCGGAAATGTGTATTAAATTAAAATTGTCAATTTTTATT 21992 |||||| |||||| |||||||||||||| |||||||||||||||||| |||||||||| Sbjct 170477 CTTAAAAGGGATAATTTGCCACCGGAAA--TGTATTAAATTAAAATTGACAATTTTTATC 170420 Query 21993 ATAATTACAAACAAAACTGAAATCCGAACAAAAACAGTTTCACTGT--aaaaaaaTCGCG 22050 ||||||||||| || ||| ||| ||||||||||||||||| |||||||||||| Sbjct 170419 ATAATTACAAAAAACACT-------GAATAAAAACAGTTTCACTGTAAAAAAAAATCGCG 170367 Query 22051 CCAAGTCCACGTTC 22064 |||||||||| ||| Sbjct 170366 CCAAGTCCACCTTC 170353 Score = 165 bits (182), Expect = 1e-36 Identities = 110/122 (90%), Gaps = 4/122 (3%) Strand=Plus/Minus Query 22219 ACGTACTTGGTGTGCGTCATTGTGTAC----TTCAAttttttttAAAAGTCCTAGTAGAT 22274 || |||||||||||||||||||||||| |||| |||||||| ||||||||| |||| Sbjct 170190 ACCTACTTGGTGTGCGTCATTGTGTACCTACTTCAGTTTTTTTTTAAAGTCCTACTAGAA 170131 Query 22275 AGATTTTAGGAATTTCATAAAAAGTGAAATATTTTGTAACTACGCACACTAAATACGTTC 22334 ||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||| Sbjct 170130 AGATTTTAGGAATTTCATAAAAAGTGAAAAATTTCGTAACCACGCACACTAAATACGTTC 170071 Query 22335 CA 22336 || Sbjct 170070 CA 170069 Score = 96.9 bits (106), Expect = 6e-16 Identities = 63/68 (93%), Gaps = 1/68 (1%) Strand=Plus/Plus Query 22013 AATCCGAACAAAAACAGTTTCACTGTaaaaaaa-TCGCGCCAAGTCCACGTTCATAAGAC 22071 |||| |||||||||||||||||||||||||||| | ||||||||||||||||||||| || Sbjct 169840 AATCTGAACAAAAACAGTTTCACTGTAAAAAAAATTGCGCCAAGTCCACGTTCATAAAAC 169899 Query 22072 TATTAAGA 22079 ||||| || Sbjct 169900 TATTAGGA 169907 Score = 91.5 bits (100), Expect = 2e-14 Identities = 60/65 (92%), Gaps = 1/65 (2%) Strand=Plus/Minus Query 22475 TAATAGTCTTATGAACGTGGACTTGGCGCGA-tttttttACAGTGAAACTGTTTTTGATC 22533 ||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||| || Sbjct 169904 TAATAGTTTTATGAACGTGGACTTGGCGCAATTTTTTTTACAGTGAAACTGTTTTTGTTC 169845 Query 22534 GGATT 22538 |||| Sbjct 169844 AGATT 169840 >seq1848 Length=818965 Score = 437 bits (484), Expect = 1e-118 Identities = 321/382 (84%), Gaps = 8/382 (2%) Strand=Plus/Plus Query 21495 TTTTACATCAACAGATTCGGTAGAATCTGGCGCCAAGTTCCGTTCTCTAGCCAGACTACC 21554 ||| | |||||||||||||||||||||||||||||| |||||||||| |||||||||||| Sbjct 19603 TTTCAAATCAACAGATTCGGTAGAATCTGGCGCCAATTTCCGTTCTCAAGCCAGACTACC 19662 Query 21555 GAGTGTGTATATA--CCGTAAGCAGAACGGTTTTTTGAGGTTACANNNNNNNNNNNNNNN 21612 ||||||||||||| |||||||||||||||||| ||||||||||| Sbjct 19663 GAGTGTGTATATATACCGTAAGCAGAACGGTTTATTGAGGTTACAATTTTTTTTTTTAAA 19722 Query 21613 NNNNNNNNNNNNNNNNNNATATGATATTTTATAATAGTAGTTCATGCTTTTTATTACGCG 21672 ||||||||||||||||||||||| ||||| ||||||||||| Sbjct 19723 TTTAAATTGTTTTTTTTTGTATGATATTTTATAATAGTAGTTTATGCTCTTTATTACGCG 19782 Query 21673 TATTACTTGATTATTATCAATTATCTTTATAATTTCTATTTAAAAATATTAAAAATAATC 21732 ||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||| Sbjct 19783 TATTA--TGATTATTATCAATTATCTTTATAATTTCTATTTAAAATTATTATAAATAATC 19840 Query 21733 AGCACAAACTATAGCGATCCAGAtttttagattttaacttttttGTTATGTAAAAAGCGG 21792 ||||||||||||||||| || |||||||||||||||||||||| |||||||||||| || Sbjct 19841 AGCACAAACTATAGCGACTCAAATTTTTAGATTTTAACTTTTTTCTTATGTAAAAAGTGG 19900 Query 21793 ACGGCCAGAGACTAAATAATATAAGGATGCATGCTAATCTTATAATAGATGGGAAAGAAA 21852 || ||||||||||||||| |||||||||||||||||||||||||||| |||| |||| Sbjct 19901 ACAGCCAGAGACTAAATACTATAAGGATGCATGCTAATCTTATAATAAATGG----GAAA 19956 Query 21853 CTACAGTGaaaaaaaGATATTT 21874 ||||||||| ||||||||| || Sbjct 19957 CTACAGTGATAAAAAGATAGTT 19978 Score = 302 bits (334), Expect = 7e-78 Identities = 189/201 (94%), Gaps = 3/201 (1%) Strand=Plus/Plus Query 21880 CTTGCAATTACACACGCCAGGCGGCGCAAGAATAACTTTTACATGAACTATAGCTTAAAG 21939 |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| Sbjct 20115 CTTGCAATTACACACGCCAGGCAGCGCAAGAAAAACTTTTACATGAACTATAGCTTAAAG 20174 Query 21940 GGGATAGTTTGCCACCGGAAATGTGTATTAAATTAAAATTGTCAATTTTTATTATAATTA 21999 ||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||| Sbjct 20175 GGGATAGTTTGCCACCGGAAA--TGTATTAAATTAAAATTGTCATTTTTTATCATAATTA 20232 Query 22000 CAAACAAAACTGAAATCCGAACAAAAACAGTTTCACTGT-aaaaaaaTCGCGCCAAGTCC 22058 |||| || ||||||||||||| |||| |||||||||||| ||||||||||||| |||||| Sbjct 20233 CAAAAAATACTGAAATCCGAATAAAAGCAGTTTCACTGTAAAAAAAATCGCGCTAAGTCC 20292 Query 22059 ACGTTCATAAGACTATTAAGA 22079 ||||||||||||||||||||| Sbjct 20293 ACGTTCATAAGACTATTAAGA 20313 Score = 95.1 bits (104), Expect = 2e-15 Identities = 62/67 (93%), Gaps = 1/67 (1%) Strand=Plus/Minus Query 22473 CTTAATAGTCTTATGAACGTGGACTTGGCGCGA-tttttttACAGTGAAACTGTTTTTGA 22531 |||||||||||||||||||||||||| |||||| ||||||||||||||||||| |||| Sbjct 20312 CTTAATAGTCTTATGAACGTGGACTTAGCGCGATTTTTTTTACAGTGAAACTGCTTTTAT 20253 Query 22532 TCGGATT 22538 ||||||| Sbjct 20252 TCGGATT 20246 >seq272 Length=85250 Score = 293 bits (324), Expect = 4e-75 Identities = 311/411 (76%), Gaps = 38/411 (9%) Strand=Plus/Minus Query 5885 ATAAAATATTAAAAATGTACAGAACGATGTACAAA---------------GTCTAAAGTA 5929 |||| ||||||||||| |||||||||||||||||| |||||||||| Sbjct 74378 ATAAGATATTAAAAATATACAGAACGATGTACAAAAATATACAGAACGGTGTCTAAAGTA 74319 Query 5930 TTATAAGAACTTGAGTTATGCAATTCTTTTAATTAATAAACATTTGTAAAAAATAGTTAA 5989 ||| ||||||| | | |||| || |||||| ||||||||||||||||||||||||| | Sbjct 74318 ATATTAGAACTTAACTCTTGCATTT-TTTTAACTAATAAACATTTGTAAAAAATAGTTTA 74260 Query 5990 TATTTATCAAAACACAATATTAAATAACATAAATTATCTTAATAATGAACCGTTACACTT 6049 | || |||||||||||||||| ||||||||||||||| | |||||| ||| || |||||| Sbjct 74259 TTTTCATCAAAACACAATATTGAATAACATAAATTATATAAATAATAAACTGTCACACTT 74200 Query 6050 CG-CCATGCATAAATTTAGCTTATAATAATGATGAGATGTATATC------------AAT 6096 || | | ||| |||||| |||||| |||||| ||||| ||| | Sbjct 74199 CGTCAACTTATAGATTTAGTTTATAAGAATGATACGATGTGCATCCTCCTCCTTCGTACC 74140 Query 6097 TTATCGGTCGTATACGGTGTAGGGGTTAGTTATCGGTCTGG--AGAGCGCGTCTTGGGTT 6154 | ||| |||| ||||| |||| |||||||||||||| ||| || ||||| || ||||| Sbjct 74139 TCATCCGTCG--TACGGCGTAGAGGTTAGTTATCGGTTTGGCAAGCGCGCGGCTCGGGTT 74082 Query 6155 CGAATCTCGGTTAGAAC-----TTGATTTTCACTTTATTTCTAGAGTTAGCGAAAGTTAG 6209 ||||||||||||||||| ||||||||||||||||||| | ||||||| |||||| Sbjct 74081 CGAATCTCGGTTAGAACGGAATGCGATTTTCACTTTATTTCTATAATTAGCGATAGTTAG 74022 Query 6210 ATCCAAATAAAAAGTCAAGCGGTCTTATTATGTGTTAGCTCGACATTAAAA 6260 || |||| || | ||| ||| | | || ||||| || |||| |||| Sbjct 74021 GTCTAAATTAAGACACAAATGGTATAAACTTGCGTTAGTTCTACATCAAAA 73971 Score = 152 bits (168), Expect = 9e-33 Identities = 156/199 (78%), Gaps = 6/199 (3%) Strand=Plus/Minus Query 25136 TATGTATAGTAGGGTTTGCCAAAATTCAATTTCCGTGAGGAACCTTTTAAAATTGGAATT 25195 ||| || | |||||| ||||||||| | |||| ||| | |||||||||||||| |||| Sbjct 72981 TATATAGATTAGGGTGTGCCAAAATGTGACTTCCTTGATGGACCTTTTAAAATTGTAATT 72922 Query 25196 TTGAGTTCTGCTTTTAACAGGAG--CTGTTTGGGCATTTTCTGA-GATATTTTGGAGGAA 25252 || ||||| ||||| |||||||| ||||||| ||||| |||| |||||||| | | Sbjct 72921 TTAAGTTCCGCTTTCAACAGGAGTTATGTTTGGACATTTCCTGACAATATTTTGAGCGTA 72862 Query 25253 AATGATTTATTTGGTTTTCATAGAATTTTTTAACAGGAGCTTTACTTTCCGGGAAATTCC 25312 || |||||||||| |||| ||||||||||||||||| || ||| |||| || | || Sbjct 72861 AAAGATTTATTTGATTTTTATAGAATTTTTTAACAGCAG-TTTTGTTTC--GGCATTTTT 72805 Query 25313 GCTGAAATTTCAAAATATC 25331 | || ||||| ||||| || Sbjct 72804 GTTGGAATTTTAAAATTTC 72786 Score = 114 bits (126), Expect = 2e-21 Identities = 94/113 (83%), Gaps = 1/113 (1%) Strand=Plus/Plus Query 25322 TCAAAATATC-TCAAGAAATGCCCAAACACAGCTCCTGTTAAAAGCGAAACTCAAAATTC 25380 ||||||||| ||| |||||| ||||||| | |||||||| |||||| |||| |||||| Sbjct 72867 TCAAAATATTGTCAGGAAATGTCCAAACATAACTCCTGTTGAAAGCGGAACTTAAAATTA 72926 Query 25381 CAATTTTTAAAGGTTCCTCATGGAAATTGAATTTTGGCACACCCTAATGTATA 25433 ||||||| |||||| | ||| |||| | |||||||||||||||||| |||| Sbjct 72927 CAATTTTAAAAGGTCCATCAAGGAAGTCACATTTTGGCACACCCTAATCTATA 72979 >seq1562 Length=1215849 Score = 109 bits (120), Expect = 9e-20 Identities = 110/141 (78%), Gaps = 3/141 (2%) Strand=Plus/Minus Query 11015 AGTTGGCAGACAGAA-ACTCTCTCGCTACGCTATCCGAGATAAACTACTACGAATGTCCT 11073 |||||| || ||| |||||| | |||||||||||||||||| | |||| |||||| Sbjct 337290 AGTTGGTAGCTAGACGACTCTCCCTCTACGCTATCCGAGATAATCCACTATTGATGTCCC 337231 Query 11074 TTAGCACTTACAGAAACTCGGAGTTTACTGCTTTGCACGGCAA--ACACACACTAATTAA 11131 | |||| ||||| |||||||||| || ||||||||| | | || |||||||||| | Sbjct 337230 TCAGCATTTACATTAACTCGGAGTCTAGCGCTTTGCACTCCCATCACTCACACTAATTGA 337171 Query 11132 AAAATATTCCAATTCTACTAT 11152 |||| |||| |||| ||||| Sbjct 337170 AAAACATTCTAATTTAACTAT 337150 >seq1774 Length=19167 Score = 95.1 bits (104), Expect = 2e-15 Identities = 87/107 (81%), Gaps = 6/107 (6%) Strand=Plus/Minus Query 17703 CCATAAAGGCGTagaataaaaattctattatttttt-aaagtccgaaagaaatttttaat 17761 ||||||||||||| |||||||||||||||||||||| ||||| || ||| ||||| | Sbjct 17568 CCATAAAGGCGTATAATAAAAATTCTATTATTTTTTGTAAGTCTAAACAAAAATTTTAGT 17509 Query 17762 ttagagaaattttttccttttGCATTCCTGCACATTTCAT--GAAAA 17806 ||| ||||| |||| |||| || | |||||| |||||| ||||| Sbjct 17508 TTAAAGAAAATTTT---TTTTTCAATTCTGCACGTTTCATAGGAAAA 17465 >seq3471 Length=20400 Score = 93.3 bits (102), Expect = 7e-15 Identities = 86/107 (80%), Gaps = 3/107 (3%) Strand=Plus/Plus Query 17703 CCATAAAGGCGTagaataaaaattctattatttttt-aaagtccgaaagaaatttttaat 17761 ||||||||||||| |||||||||||||||||||||| ||||| || ||| ||||| | Sbjct 9512 CCATAAAGGCGTATAATAAAAATTCTATTATTTTTTGTAAGTCTAAACAAAAATTTTAGT 9571 Query 17762 ttagagaaattttttccttttGCATTCCTGCACATTTCAT--GAAAA 17806 ||| ||||| ||| |||| || | |||||| |||||| ||||| Sbjct 9572 TTAAAGAAAAAATTTTTTTTTCCAATTCTGCACGTTTCATAGGAAAA 9618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 83241137309925