Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20nemesis_20[genbank_20GCA_5F002245505.1_202017-08-10] 40,359 sequences; 808,524,533 total letters Query= NC_006657.1 Length=19820 Score E Sequences producing significant alignments: (Bits) Value seq8078 257 2e-64 seq3261 248 1e-61 seq4013 185 1e-42 seq859 170 2e-38 SEQ20740 143 3e-30 seq4372 138 1e-28 seq2047 138 1e-28 seq5464 134 2e-27 seq272 109 7e-20 seq600 102 1e-17 seq1966 100 4e-17 seq6060 86.0 8e-13 SEQ34874 80.6 3e-11 >seq8078 Length=15557 Score = 257 bits (284), Expect = 2e-64 Identities = 200/246 (81%), Gaps = 5/246 (2%) Strand=Plus/Minus Query 10969 TACAAGTAATGTGAATCGTGTCCATGATCGATGCGTAATAAACAAAGTTTTTTATCAAAT 11028 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 3935 TACAAGTAATGTGAATCGTGTCCATGATCGATGCGTAATTAACAAAGTTTTTTATCAAAT 3876 Query 11029 TTATTGCAAATTATTAATTATCAATATACACTGATGGGAAGatttattaactattaacaa 11088 || |||| ||||||||||| | ||||| ||||| | |||||||||||||||||||||| Sbjct 3875 TT---GCAACTTATTAATTATTACTATACTCTGATAGAAAGATTTATTAACTATTAACAA 3819 Query 11089 attaatttattcgaaaacaattatttaatttattaaattctaataaatNNNNNNNNNNNN 11148 ||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 3818 ATTAATTTATTCGAAGACAATTATTTAATTTATTAAATTCTAATAAATATTTGTTAACAT 3759 Query 11149 NNNNNNNNNNNNNNNNTGAGAGGAAAGT--ATATTTAGTAAAATAGTTTATAAGTATTTA 11206 | ||| ||||| || | ||||||||||||||||||||||||| Sbjct 3758 TCAATAAATATTCATTTTGGAGAAAAGTTCATTTGTAGTAAAATAGTTTATAAGTATTTA 3699 Query 11207 TTAATA 11212 |||||| Sbjct 3698 TTAATA 3693 Score = 84.2 bits (92), Expect = 3e-12 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 10914 GCAGATCTGGCCAGATCTGTTTATATATGGCCAGATCTAATCTGTTTTTCCCGGGT 10969 ||||||||| ||||||| |||||| ||||||||||||||||| ||||||||||||| Sbjct 4202 GCAGATCTGACCAGATCGGTTTATGTATGGCCAGATCTAATCCGTTTTTCCCGGGT 4257 Score = 82.4 bits (90), Expect = 1e-11 Identities = 50/53 (94%), Gaps = 0/53 (0%) Strand=Plus/Minus Query 10537 CCCGGGAAAAACGGATTAGATCTGGCCATATATAAACAGATCTGGCCAGATCT 10589 |||||||||||||||||||||||||||||| |||||| ||||||| ||||||| Sbjct 4256 CCCGGGAAAAACGGATTAGATCTGGCCATACATAAACCGATCTGGTCAGATCT 4204 >seq3261 Length=19281 Score = 248 bits (274), Expect = 1e-61 Identities = 212/266 (80%), Gaps = 10/266 (4%) Strand=Plus/Plus Query 10969 TACAAGTAATGTGAATCGTGTCCATGATCGATGCGTAATAAACAAAGTTT-TTTATCAAA 11027 ||||||||||||||||||||||||||||||||||||||| || |||| ||||||| | Sbjct 242 TACAAGTAATGTGAATCGTGTCCATGATCGATGCGTAAT---TAATGTTTATTTATCACA 298 Query 11028 TTTATTGCAAATTATTAATTATCAATATACACTGATGGGAAGatttattaactattaaca 11087 |||| ||| ||| ||||||| | ||||| ||||| | ||||||||||||||||||||| Sbjct 299 TTTA---CAACTTAATAATTATTACTATACTCTGATAGAAAGATTTATTAACTATTAACA 355 Query 11088 aattaatttattcgaaaacaattatttaatttattaaattctaataaatNNNNNNNNNNN 11147 |||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 356 AATTAATTTATTCGAAGACAATTATTTAATTTATTAAATTCTAATAAATATTTGTTAACA 415 Query 11148 NNNNNNNNNNNNNNNNNTGAGAGGAAAGTATATT--TAGTAAAATAGTTTATAAGTATTT 11205 | | |||| |||||| |||||||| ||||||||||||||| Sbjct 416 TTCAATAAATATTCATTT-TGTAGAAAATATATTTATAGTAAAACAGTTTATAAGTATTT 474 Query 11206 ATTAATAGTTAACAAATATAGTTATA 11231 |||||||||||||||||||||||||| Sbjct 475 ATTAATAGTTAACAAATATAGTTATA 500 Score = 87.8 bits (96), Expect = 2e-13 Identities = 92/121 (76%), Gaps = 9/121 (7%) Strand=Plus/Plus Query 10787 ATCGGCGCGCACGGGAACCGAACCTGGAACCTGACGCTTGAGAGACTAGTTCATTACCTG 10846 ||||||| || | |||||||||||||| |||| || ||||| |||||| ||| |||||| Sbjct 128 ATCGGCGTGCGCAGGAACCGAACCTGGGACCTAACACTTGAAAGACTAATTCCTTACCTC 187 Query 10847 TTTACCAACGAGACTTGGTTGAAACGAGAGTAGGTAGAGTTTGTAATAACTATAGTTAAT 10906 ||||||||||| ||| |||| | | |||||| |||||||| | || |||| Sbjct 188 TTTACCAACGAAGCTTCCATGAA--------AAGCAGAGTTAGTAATAAC-AGAGGTAAT 238 Query 10907 A 10907 | Sbjct 239 A 239 >seq4013 Length=136960 Score = 185 bits (204), Expect = 1e-42 Identities = 149/179 (83%), Gaps = 2/179 (1%) Strand=Plus/Minus Query 15326 ATTAGTGGATTTTTAGTTTATTGCTAATTATAAATAAACTACATTGAATTAGACCATGAT 15385 |||| | ||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 24337 ATTAATACATTTTTAGTTTATTGCTAATTATAAATAAACTACATTGAATCAGACCATGAT 24278 Query 15386 CTTTGAAAGGACTTTATTTTAAATCATACTGAAGCGTATaaaaa--aaaTGGACTTGATC 15443 || |||||||| |||| ||||||||| || |||||||||| |||| || ||| || Sbjct 24277 CTCAAAAAGGACTCAGTTTTGAATCATACTAAAACGTATAAAAAGTAAATAGATTTGTTC 24218 Query 15444 AGTTAAGTTTTTCGGCAGTTATCGTGACCACGCCGGTTTTCATACATACATTTAAAAGC 15502 |||| | |||||| ||| |||| |||| || ||| ||||| ||||| |||||| | ||| Sbjct 24217 AGTTGAATTTTTCAGCAATTATTGTGATCATGCCAGTTTTTATACACACATTTGACAGC 24159 Score = 116 bits (128), Expect = 5e-22 Identities = 105/133 (79%), Gaps = 12/133 (9%) Strand=Plus/Minus Query 15596 TTTATGTGTAAACACAGTTCTACAAGTGTGATAGAAAATAAATAGAGAAAATTTTAGTCC 15655 ||||| ||||| | ||||||||||| |||||||||||| ||||||| ||||||||| Sbjct 23967 TTTATACGTAAATATTGTTCTACAAGTTTGATAGAAAATACATAGAGATAATTTTAGTTT 23908 Query 15656 AAGAAATCGCCTGATTTTTGTAAGGCGAGTGTAGAGCACAACCTCATCCGCTTCGCTTAT 15715 |||||||||| || |||| ||||| |||||||||| || |||||||||| Sbjct 23907 AAGAAATCGCTCGA-TTTTCTAAGGTGAGTGTAGAG-----------CCTCTTCGCTTAT 23860 Query 15716 GAGGCGTGCAAAA 15728 || |||||||||| Sbjct 23859 GACGCGTGCAAAA 23847 >seq859 Length=62242 Score = 170 bits (188), Expect = 2e-38 Identities = 112/124 (90%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 1271 AAAAAGTTTGTAAAATCCAAAAGTGCACGCCTCATAATCTCATTTTTCATAATAAAGTTG 1330 || ||||||| ||||||||||||||||||||||||||| | ||||| ||||||||| ||| Sbjct 5720 AATAAGTTTGAAAAATCCAAAAGTGCACGCCTCATAATTTAATTTTCCATAATAAAATTG 5779 Query 1331 ATTAAAATAAAATACAAATACTTTTAAATCTTTCGCGCCATTGTCCACCCAGAAAAGAAA 1390 ||||||||||||||||||||||||||||| |||||| || ||||| |||||||||||| Sbjct 5780 ATTAAAATAAAATACAAATACTTTTAAATATTTCGCCCCGTTGTCTTACCAGAAAAGAAA 5839 Query 1391 GGTA 1394 |||| Sbjct 5840 GGTA 5843 Score = 158 bits (174), Expect = 2e-34 Identities = 141/177 (80%), Gaps = 6/177 (3%) Strand=Plus/Plus Query 15556 AAAATGTCATAAGTGTTGAAAATAGAATTTTTCCATGACATTTATGTGTAAACACAGTTC 15615 |||||||| |||||||||||| ||| |||||| ||||||||||||| |||| | |||| Sbjct 5944 AAAATGTCGTAAGTGTTGAAACTAGTGTTTTTCTATGACATTTATGTATAAATATTGTTC 6003 Query 15616 TACAAGTGTGATAGAAAATAAATAGAGAAAATTTTAGTCCAAGAAATCGCCTGATTTTTG 15675 || || || ||||| |||||| |||||| |||||| || | || | ||||||||| Sbjct 6004 TAAAAATGCGATAGGAAATAAGTAGAGACAATTTTGGTTC------TCACTTGATTTTTG 6057 Query 15676 TAAGGCGAGTGTAGAGCACAACCTCATCCGCTTCGCTTATGAGGCGTGCAAAAGACT 15732 |||||||| |||| || | | |||| | ||| ||||||||||||||||||| ||| Sbjct 6058 TAAGGCGAAAGTAGGGCGCTATTTCATTCACTTTGCTTATGAGGCGTGCAAAATACT 6114 >SEQ20740 Length=2826 Score = 143 bits (158), Expect = 3e-30 Identities = 124/163 (76%), Gaps = 5/163 (3%) Strand=Plus/Minus Query 11081 attaacaaattaatttattcgaaaacaattatttaatttattaaattctaataaatNNNN 11140 ||||||||||||||||||||||| ||||||||||||||||||||||||||||| || Sbjct 2325 ATTAACAAATTAATTTATTCGAAGACAATTATTTAATTTATTAAATTCTAATAGATATTT 2266 Query 11141 NNNNNNNNNNNNNNNNNNNNNNNNTGAGAGGAAAGTATATT-----TAGTAAAATAGTTT 11195 | ||| |||||||||| |||||||||||||| Sbjct 2265 GTTAACATTCAATAAATATTCATTTTGGAGAAAAGTATATTATTATTAGTAAAATAGTTT 2206 Query 11196 ATAAGTATTTATTAATAGTTAACAAATATAGTTATATCTGGCC 11238 ||| ||||||||||||||||||||||||||||||||||||||| Sbjct 2205 ATAGGTATTTATTAATAGTTAACAAATATAGTTATATCTGGCC 2163 >seq4372 Length=314715 Score = 138 bits (152), Expect = 1e-28 Identities = 96/109 (88%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 14846 ATTTTCTGACTCAGCTCGTCGAGTTAAGTCGGAATATAGCAAAATTTTTCAAAAGTTTCG 14905 ||||||||| || ||| | |||| | ||||| ||||||||||||||||||||||||| | Sbjct 5937 ATTTTCTGAATCCGCTTGACGAGCTGAGTCGAAATATAGCAAAATTTTTCAAAAGTTCTG 5996 Query 14906 TCATGAGGACCATTGCAATAGTTAGATTTCTATGAAATCTACTAAAAAA 14954 | |||||||||| ||||||||||||||||||||||||||||| || ||| Sbjct 5997 TTATGAGGACCAATGCAATAGTTAGATTTCTATGAAATCTACAAATAAA 6045 >seq2047 Length=897053 Score = 138 bits (152), Expect = 1e-28 Identities = 96/109 (88%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 14846 ATTTTCTGACTCAGCTCGTCGAGTTAAGTCGGAATATAGCAAAATTTTTCAAAAGTTTCG 14905 ||||||||| || ||| | | || | | ||| ||||||||||||||||||||||||| || Sbjct 418648 ATTTTCTGAATCCGCTTGACAAGCTGAATCGAAATATAGCAAAATTTTTCAAAAGTTCCG 418589 Query 14906 TCATGAGGACCATTGCAATAGTTAGATTTCTATGAAATCTACTAAAAAA 14954 |||||||||||| ||||||||||||||||||||||||||||| || ||| Sbjct 418588 TCATGAGGACCAATGCAATAGTTAGATTTCTATGAAATCTACAAATAAA 418540 >seq5464 Length=105685 Score = 134 bits (148), Expect = 2e-27 Identities = 96/109 (88%), Gaps = 1/109 (1%) Strand=Plus/Plus Query 14846 ATTTTCTGACTCAGCTCGTCGAGTTAAGTCGGAATATAGCAAAATTTTTCAAAAGTTTCG 14905 ||||||||| || ||| | |||| | ||||| |||| ||||||||||| |||||||| || Sbjct 29727 ATTTTCTGAATCCGCTTGACGAGCTGAGTCGAAATAGAGCAAAATTTT-CAAAAGTTCCG 29785 Query 14906 TCATGAGGACCATTGCAATAGTTAGATTTCTATGAAATCTACTAAAAAA 14954 |||||||||||| ||||||||||||||||||||||||||||| || ||| Sbjct 29786 TCATGAGGACCAATGCAATAGTTAGATTTCTATGAAATCTACAAATAAA 29834 >seq272 Length=85250 Score = 109 bits (120), Expect = 7e-20 Identities = 83/97 (86%), Gaps = 1/97 (1%) Strand=Plus/Minus Query 1787 CTTTTTGGTTTGAAAAAATCTTAACAAACGCGGCAAGG-TCAAATCTCAACCAAGCTGGT 1845 |||||||| ||| ||||| ||||| |||||| |||| || ||||||||| |||||||| Sbjct 82303 CTTTTTGGGTTGTGAAAATTTTAACCTACGCGGTAAGGGTCGAATCTCAACTAAGCTGGT 82244 Query 1846 TTCTAAGACCAGCTTGGGATTCGAACTCGCACCTGGC 1882 ||| |||||||||||| ||||||||| | |||||||| Sbjct 82243 TTCCAAGACCAGCTTGAGATTCGAACCCACACCTGGC 82207 Score = 95.1 bits (104), Expect = 2e-15 Identities = 80/97 (82%), Gaps = 1/97 (1%) Strand=Plus/Minus Query 1787 CTTTTTGGTTTGAAAAAATCTTAACAAACGCGGCAAGG-TCAAATCTCAACCAAGCTGGT 1845 |||||||| ||| ||||| ||||| ||| || |||| || ||||||||| |||||||| Sbjct 79000 CTTTTTGGGTTGTGAAAATTTTAACCTACGTGGTAAGGGTCGAATCTCAACTAAGCTGGT 78941 Query 1846 TTCTAAGACCAGCTTGGGATTCGAACTCGCACCTGGC 1882 ||| |||||||||||| |||| |||| | | |||||| Sbjct 78940 TTCCAAGACCAGCTTGAGATTTGAACCCACGCCTGGC 78904 >seq600 Length=1111 Score = 102 bits (112), Expect = 1e-17 Identities = 62/65 (95%), Gaps = 2/65 (3%) Strand=Plus/Minus Query 11168 GAGGAAAGTATATTTA--GTAAAATAGTTTATAAGTATTTATTAATAGTTAACAAATATA 11225 ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 567 GAGAAAAGTATATTTATAGTAAAATAGTTTATAAGTATTTATTAATAGTTAACAAATATA 508 Query 11226 GTTAT 11230 ||||| Sbjct 507 GTTAT 503 >seq1966 Length=14178 Score = 100 bits (110), Expect = 4e-17 Identities = 81/97 (84%), Gaps = 1/97 (1%) Strand=Plus/Plus Query 1787 CTTTTTGGTTTGAAAAAATCTTAACAAACGCGGCAAGG-TCAAATCTCAACCAAGCTGGT 1845 |||||||| ||| ||||| ||||| |||||| |||| || ||||||||| |||||||| Sbjct 4223 CTTTTTGGGTTGTGAAAATTTTAACCTACGCGGTAAGGGTCGAATCTCAACTAAGCTGGT 4282 Query 1846 TTCTAAGACCAGCTTGGGATTCGAACTCGCACCTGGC 1882 ||| ||||||| |||| ||||||||| | | |||||| Sbjct 4283 TTCCAAGACCATCTTGAGATTCGAACCCACGCCTGGC 4319 >seq6060 Length=27493 Score = 86.0 bits (94), Expect = 8e-13 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 19591 AAAAAACCAAAATTCTTCACATCATAATTCTTGGAATTCAATAGTACCTACTCACATTTA 19650 || |||| ||||| | || || |||||| |||||||||||| ||||||||||||| | Sbjct 25707 AAGAAACATAAATTTTCCATATTATAATTTTTGGAATTCAATTGTACCTACTCACAACAA 25766 Query 19651 ATTAGAACACGTATAACCCGAACATACTTTATCGGTTACCATGAACTTTGTCGCCAACCG 19710 || || || ||| | | | |||||||| |||||||||||||||||| |||| Sbjct 25767 ATAAGTACTCGTGTTTCTTAGCCGTACTTTATTAGTTACCATGAACTTTGTCCTTTACCG 25826 Query 19711 GACGT 19715 || || Sbjct 25827 GATGT 25831 >SEQ34874 Length=1816 Score = 80.6 bits (88), Expect = 3e-11 Identities = 63/75 (84%), Gaps = 3/75 (4%) Strand=Plus/Plus Query 11010 ACAAAGTTTTTTATCAAATTTATTGCAAATTATTAATTATCAATATACACTGATGGGAAG 11069 |||| ||||||||||||||| |||| ||||||||||| | ||||| ||||| | ||| Sbjct 1527 ACAACGTTTTTTATCAAATTC---GCAACTTATTAATTATTACTATACTCTGATAGAAAG 1583 Query 11070 atttattaactatta 11084 |||||||||||| || Sbjct 1584 ATTTATTAACTACTA 1598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 63276058382411