Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calephelis_20nemesis_20[genbank_20GCA_5F002245505.1_202017-08-10]
40,359 sequences; 808,524,533 total letters
Query= NC_006662.1
Length=17477
Score E
Sequences producing significant alignments: (Bits) Value
seq272 311 1e-80
seq8078 123 3e-24
seq1562 109 6e-20
seq3261 100 3e-17
>seq272
Length=85250
Score = 311 bits (344), Expect = 1e-80
Identities = 325/428 (76%), Gaps = 38/428 (9%)
Strand=Plus/Plus
Query 3963 TTTTAATGTCGAGCTAACACATAATAAGACCGCTTGACTTTTTATTTGGATCTAACTTTC 4022
|||| |||| || ||||| || | | ||| ||| | || |||| || |||||| ||
Sbjct 73971 TTTTGATGTAGAACTAACGCAAGTTTATACCATTTGTGTCTTAATTTAGACCTAACTATC 74030
Query 4023 GCTAACTCTAGAAATAAAGTGAAAATCAA-----GTTCTAACCGAGATTCGAACCCAAGA 4077
||||| | ||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 74031 GCTAATTATAGAAATAAAGTGAAAATCGCATTCCGTTCTAACCGAGATTCGAACCCGAGC 74090
Query 4078 CGCGCTCT--CCAGACCGATAACTAACCCCTACACCGTATACGACCGATAAATT------ 4129
||||| || ||| |||||||||||||| |||| ||||| |||| ||| | |
Sbjct 74091 CGCGCGCTTGCCAAACCGATAACTAACCTCTACGCCGTA--CGACGGATGAGGTACGAAG 74148
Query 4130 ------GATATACATCTCATCATTATTATAAGCTAAATTTATGCATGG-CGAAGTGTAAC 4182
||| ||||| |||||| |||||| |||||| ||| | | |||||||| ||
Sbjct 74149 GAGGAGGATGCACATCGTATCATTCTTATAAACTAAATCTATAAGTTGACGAAGTGTGAC 74208
Query 4183 GGTTCATTATTAAGATAATTTATGTTATTTAATATTGTGTTTTGATAAATATTAACTATT 4242
||| |||||| | ||||||||||||||| |||||||||||||||| || || |||||||
Sbjct 74209 AGTTTATTATTTATATAATTTATGTTATTCAATATTGTGTTTTGATGAAAATAAACTATT 74268
Query 4243 TTTTACAAATGTTTATTAATTAAAAGAATTGCATAACTCAAGTTCTTATAATACTTTAGA 4302
|||||||||||||||||| |||||| || |||| | | ||||||| ||| |||||||||
Sbjct 74269 TTTTACAAATGTTTATTAGTTAAAA-AAATGCAAGAGTTAAGTTCTAATATTACTTTAGA 74327
Query 4303 C---------------TTTGTACATCGTTCTGTACATTTTTAATATTTTATGATAAATTT 4347
| |||||||||||||||||| ||||||||||| |||| ||||| |
Sbjct 74328 CACCGTTCTGTATATTTTTGTACATCGTTCTGTATATTTTTAATATCTTATTTTAAATCT 74387
Query 4348 TAATGTTT 4355
||||||||
Sbjct 74388 TAATGTTT 74395
Score = 149 bits (164), Expect = 7e-32
Identities = 155/199 (78%), Gaps = 6/199 (3%)
Strand=Plus/Plus
Query 11712 GATATTTTGAAATTTCAGCGGAATTTCCCGGAAAGTAAAGCTCCTGTTAAAAAATTCTAT 11771
|| ||||| ||||| || | || | || |||| ||| || |||||||||||||||||
Sbjct 72786 GAAATTTTAAAATTCCAACAAAAATGCC--GAAACAAAA-CTGCTGTTAAAAAATTCTAT 72842
Query 11772 GAAAACCAAATAAATCATTTTCCTCCAAAATATC-TCAGAAAATGCCCAAACAG--CTCC 11828
|||| |||||||||| ||| | |||||||| |||| ||||| ||||||| ||||
Sbjct 72843 AAAAATCAAATAAATCTTTTACGCTCAAAATATTGTCAGGAAATGTCCAAACATAACTCC 72902
Query 11829 TGTTAAAAGCAGAACTCAAAATTCCAATTTTAAAAGGTTCCTCACGGGAATTGAATTTTG 11888
|||| ||||| ||||| |||||| |||||||||||||| | ||| || | | ||||||
Sbjct 72903 TGTTGAAAGCGGAACTTAAAATTACAATTTTAAAAGGTCCATCAAGGAAGTCACATTTTG 72962
Query 11889 GCAAACCCTACTATACATA 11907
||| |||||| | || |||
Sbjct 72963 GCACACCCTAATCTATATA 72981
Score = 120 bits (132), Expect = 3e-23
Identities = 95/113 (84%), Gaps = 1/113 (1%)
Strand=Plus/Minus
Query 11610 TATACATTAGGGTGTGCCAAAATTCAATTTCCATGAGGAACCTTTTAAAATTGGAATTTT 11669
|||| |||||||||||||||||| | |||| ||| | |||||||||||||| ||||||
Sbjct 72979 TATAGATTAGGGTGTGCCAAAATGTGACTTCCTTGATGGACCTTTTAAAATTGTAATTTT 72920
Query 11670 GAGTTTCGCTTTTAACAGGAGCTGTGTTTGGGCATTTCTTGA-GATATTTTGA 11721
|||| |||||| |||||||| | ||||||| |||||| ||| |||||||||
Sbjct 72919 AAGTTCCGCTTTCAACAGGAGTTATGTTTGGACATTTCCTGACAATATTTTGA 72867
>seq8078
Length=15557
Score = 123 bits (136), Expect = 3e-24
Identities = 83/92 (90%), Gaps = 3/92 (3%)
Strand=Plus/Plus
Query 10376 AGCGTATATTGATAATTAATAATTTCCAGTAAATTTGATAAAAAACTTTGTTTATTACGC 10435
|| ||||| | ||||||||||| || || ||||||||||||||||||||| |||||||
Sbjct 3847 AGAGTATAGTAATAATTAATAAGTTGCA---AATTTGATAAAAAACTTTGTTAATTACGC 3903
Query 10436 ATCGATCATGGACACGATTCACATTACTTGTA 10467
||||||||||||||||||||||||||||||||
Sbjct 3904 ATCGATCATGGACACGATTCACATTACTTGTA 3935
Score = 84.2 bits (92), Expect = 2e-12
Identities = 52/56 (93%), Gaps = 0/56 (0%)
Strand=Plus/Minus
Query 10467 ACCCGGGAAAAACAGATTAGATCTGGCCATATATAAACAGATCTGGCCAGATCTGC 10522
||||||||||||| ||||||||||||||||| |||||| ||||||| |||||||||
Sbjct 4257 ACCCGGGAAAAACGGATTAGATCTGGCCATACATAAACCGATCTGGTCAGATCTGC 4202
>seq1562
Length=1215849
Score = 109 bits (120), Expect = 6e-20
Identities = 110/141 (78%), Gaps = 3/141 (2%)
Strand=Plus/Plus
Query 16552 ATAGTAGAATTGGAATATTTTTTAATTAGTGTGTGT--TTGCCGTGCAAAGCAGTAAACT 16609
||||| |||| |||| ||||| |||||||||| || | | ||||||||| || |||
Sbjct 337150 ATAGTTAAATTAGAATGTTTTTCAATTAGTGTGAGTGATGGGAGTGCAAAGCGCTAGACT 337209
Query 16610 CCGAGTTTCTGTAAGTGCTAAAGGACATTCGTAGTAGTTTATCTCGGATAGCGTAGCGAG 16669
||||||| ||||| |||| | |||||| |||| | |||||||||||||||||| | |
Sbjct 337210 CCGAGTTAATGTAAATGCTGAGGGACATCAATAGTGGATTATCTCGGATAGCGTAGAGGG 337269
Query 16670 AGAGT-TTCTGTCTGCCAACT 16689
||||| ||| || ||||||
Sbjct 337270 AGAGTCGTCTAGCTACCAACT 337290
>seq3261
Length=19281
Score = 100 bits (110), Expect = 3e-17
Identities = 95/121 (79%), Gaps = 9/121 (7%)
Strand=Plus/Minus
Query 10529 TATTAACTATAGTTATTACAAACTCTACCTACTCTCGTTTCAAGCAAGTCTCGTTGGTAA 10588
||||| || | |||||||| |||||| | | |||| | ||| ||||||||||
Sbjct 239 TATTACCTCT-GTTATTACTAACTCTGCTT--------TTCATGGAAGCTTCGTTGGTAA 189
Query 10589 ACAGGTAATGAATTAGTCTCTCAAGCGTCAGGTCCCAGGTTCGGTTCCCGTGCGCGCCGA 10648
| |||||| |||||||||| ||||| || ||||||||||||||||||| | || ||||||
Sbjct 188 AGAGGTAAGGAATTAGTCTTTCAAGTGTTAGGTCCCAGGTTCGGTTCCTGCGCACGCCGA 129
Query 10649 T 10649
|
Sbjct 128 T 128
Score = 93.3 bits (102), Expect = 5e-15
Identities = 78/93 (84%), Gaps = 7/93 (8%)
Strand=Plus/Minus
Query 10376 AGCGTATATTGATAATTAATAATTTCCAGTAAATTTGATAAA-AAACTTTGTTTATTACG 10434
|| ||||| | ||||||| ||| || |||||| ||||||| |||| || ||||||
Sbjct 328 AGAGTATAGTAATAATTATTAAGTT---GTAAATGTGATAAATAAACATTA---ATTACG 275
Query 10435 CATCGATCATGGACACGATTCACATTACTTGTA 10467
|||||||||||||||||||||||||||||||||
Sbjct 274 CATCGATCATGGACACGATTCACATTACTTGTA 242
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 55781957144480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |