Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20nemesis_20[genbank_20GCA_5F002245505.1_202017-08-10] 40,359 sequences; 808,524,533 total letters Query= NC_006662.1 Length=17477 Score E Sequences producing significant alignments: (Bits) Value seq272 311 1e-80 seq8078 123 3e-24 seq1562 109 6e-20 seq3261 100 3e-17 >seq272 Length=85250 Score = 311 bits (344), Expect = 1e-80 Identities = 325/428 (76%), Gaps = 38/428 (9%) Strand=Plus/Plus Query 3963 TTTTAATGTCGAGCTAACACATAATAAGACCGCTTGACTTTTTATTTGGATCTAACTTTC 4022 |||| |||| || ||||| || | | ||| ||| | || |||| || |||||| || Sbjct 73971 TTTTGATGTAGAACTAACGCAAGTTTATACCATTTGTGTCTTAATTTAGACCTAACTATC 74030 Query 4023 GCTAACTCTAGAAATAAAGTGAAAATCAA-----GTTCTAACCGAGATTCGAACCCAAGA 4077 ||||| | ||||||||||||||||||| |||||||||||||||||||||| || Sbjct 74031 GCTAATTATAGAAATAAAGTGAAAATCGCATTCCGTTCTAACCGAGATTCGAACCCGAGC 74090 Query 4078 CGCGCTCT--CCAGACCGATAACTAACCCCTACACCGTATACGACCGATAAATT------ 4129 ||||| || ||| |||||||||||||| |||| ||||| |||| ||| | | Sbjct 74091 CGCGCGCTTGCCAAACCGATAACTAACCTCTACGCCGTA--CGACGGATGAGGTACGAAG 74148 Query 4130 ------GATATACATCTCATCATTATTATAAGCTAAATTTATGCATGG-CGAAGTGTAAC 4182 ||| ||||| |||||| |||||| |||||| ||| | | |||||||| || Sbjct 74149 GAGGAGGATGCACATCGTATCATTCTTATAAACTAAATCTATAAGTTGACGAAGTGTGAC 74208 Query 4183 GGTTCATTATTAAGATAATTTATGTTATTTAATATTGTGTTTTGATAAATATTAACTATT 4242 ||| |||||| | ||||||||||||||| |||||||||||||||| || || ||||||| Sbjct 74209 AGTTTATTATTTATATAATTTATGTTATTCAATATTGTGTTTTGATGAAAATAAACTATT 74268 Query 4243 TTTTACAAATGTTTATTAATTAAAAGAATTGCATAACTCAAGTTCTTATAATACTTTAGA 4302 |||||||||||||||||| |||||| || |||| | | ||||||| ||| ||||||||| Sbjct 74269 TTTTACAAATGTTTATTAGTTAAAA-AAATGCAAGAGTTAAGTTCTAATATTACTTTAGA 74327 Query 4303 C---------------TTTGTACATCGTTCTGTACATTTTTAATATTTTATGATAAATTT 4347 | |||||||||||||||||| ||||||||||| |||| ||||| | Sbjct 74328 CACCGTTCTGTATATTTTTGTACATCGTTCTGTATATTTTTAATATCTTATTTTAAATCT 74387 Query 4348 TAATGTTT 4355 |||||||| Sbjct 74388 TAATGTTT 74395 Score = 149 bits (164), Expect = 7e-32 Identities = 155/199 (78%), Gaps = 6/199 (3%) Strand=Plus/Plus Query 11712 GATATTTTGAAATTTCAGCGGAATTTCCCGGAAAGTAAAGCTCCTGTTAAAAAATTCTAT 11771 || ||||| ||||| || | || | || |||| ||| || ||||||||||||||||| Sbjct 72786 GAAATTTTAAAATTCCAACAAAAATGCC--GAAACAAAA-CTGCTGTTAAAAAATTCTAT 72842 Query 11772 GAAAACCAAATAAATCATTTTCCTCCAAAATATC-TCAGAAAATGCCCAAACAG--CTCC 11828 |||| |||||||||| ||| | |||||||| |||| ||||| ||||||| |||| Sbjct 72843 AAAAATCAAATAAATCTTTTACGCTCAAAATATTGTCAGGAAATGTCCAAACATAACTCC 72902 Query 11829 TGTTAAAAGCAGAACTCAAAATTCCAATTTTAAAAGGTTCCTCACGGGAATTGAATTTTG 11888 |||| ||||| ||||| |||||| |||||||||||||| | ||| || | | |||||| Sbjct 72903 TGTTGAAAGCGGAACTTAAAATTACAATTTTAAAAGGTCCATCAAGGAAGTCACATTTTG 72962 Query 11889 GCAAACCCTACTATACATA 11907 ||| |||||| | || ||| Sbjct 72963 GCACACCCTAATCTATATA 72981 Score = 120 bits (132), Expect = 3e-23 Identities = 95/113 (84%), Gaps = 1/113 (1%) Strand=Plus/Minus Query 11610 TATACATTAGGGTGTGCCAAAATTCAATTTCCATGAGGAACCTTTTAAAATTGGAATTTT 11669 |||| |||||||||||||||||| | |||| ||| | |||||||||||||| |||||| Sbjct 72979 TATAGATTAGGGTGTGCCAAAATGTGACTTCCTTGATGGACCTTTTAAAATTGTAATTTT 72920 Query 11670 GAGTTTCGCTTTTAACAGGAGCTGTGTTTGGGCATTTCTTGA-GATATTTTGA 11721 |||| |||||| |||||||| | ||||||| |||||| ||| ||||||||| Sbjct 72919 AAGTTCCGCTTTCAACAGGAGTTATGTTTGGACATTTCCTGACAATATTTTGA 72867 >seq8078 Length=15557 Score = 123 bits (136), Expect = 3e-24 Identities = 83/92 (90%), Gaps = 3/92 (3%) Strand=Plus/Plus Query 10376 AGCGTATATTGATAATTAATAATTTCCAGTAAATTTGATAAAAAACTTTGTTTATTACGC 10435 || ||||| | ||||||||||| || || ||||||||||||||||||||| ||||||| Sbjct 3847 AGAGTATAGTAATAATTAATAAGTTGCA---AATTTGATAAAAAACTTTGTTAATTACGC 3903 Query 10436 ATCGATCATGGACACGATTCACATTACTTGTA 10467 |||||||||||||||||||||||||||||||| Sbjct 3904 ATCGATCATGGACACGATTCACATTACTTGTA 3935 Score = 84.2 bits (92), Expect = 2e-12 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 10467 ACCCGGGAAAAACAGATTAGATCTGGCCATATATAAACAGATCTGGCCAGATCTGC 10522 ||||||||||||| ||||||||||||||||| |||||| ||||||| ||||||||| Sbjct 4257 ACCCGGGAAAAACGGATTAGATCTGGCCATACATAAACCGATCTGGTCAGATCTGC 4202 >seq1562 Length=1215849 Score = 109 bits (120), Expect = 6e-20 Identities = 110/141 (78%), Gaps = 3/141 (2%) Strand=Plus/Plus Query 16552 ATAGTAGAATTGGAATATTTTTTAATTAGTGTGTGT--TTGCCGTGCAAAGCAGTAAACT 16609 ||||| |||| |||| ||||| |||||||||| || | | ||||||||| || ||| Sbjct 337150 ATAGTTAAATTAGAATGTTTTTCAATTAGTGTGAGTGATGGGAGTGCAAAGCGCTAGACT 337209 Query 16610 CCGAGTTTCTGTAAGTGCTAAAGGACATTCGTAGTAGTTTATCTCGGATAGCGTAGCGAG 16669 ||||||| ||||| |||| | |||||| |||| | |||||||||||||||||| | | Sbjct 337210 CCGAGTTAATGTAAATGCTGAGGGACATCAATAGTGGATTATCTCGGATAGCGTAGAGGG 337269 Query 16670 AGAGT-TTCTGTCTGCCAACT 16689 ||||| ||| || |||||| Sbjct 337270 AGAGTCGTCTAGCTACCAACT 337290 >seq3261 Length=19281 Score = 100 bits (110), Expect = 3e-17 Identities = 95/121 (79%), Gaps = 9/121 (7%) Strand=Plus/Minus Query 10529 TATTAACTATAGTTATTACAAACTCTACCTACTCTCGTTTCAAGCAAGTCTCGTTGGTAA 10588 ||||| || | |||||||| |||||| | | |||| | ||| |||||||||| Sbjct 239 TATTACCTCT-GTTATTACTAACTCTGCTT--------TTCATGGAAGCTTCGTTGGTAA 189 Query 10589 ACAGGTAATGAATTAGTCTCTCAAGCGTCAGGTCCCAGGTTCGGTTCCCGTGCGCGCCGA 10648 | |||||| |||||||||| ||||| || ||||||||||||||||||| | || |||||| Sbjct 188 AGAGGTAAGGAATTAGTCTTTCAAGTGTTAGGTCCCAGGTTCGGTTCCTGCGCACGCCGA 129 Query 10649 T 10649 | Sbjct 128 T 128 Score = 93.3 bits (102), Expect = 5e-15 Identities = 78/93 (84%), Gaps = 7/93 (8%) Strand=Plus/Minus Query 10376 AGCGTATATTGATAATTAATAATTTCCAGTAAATTTGATAAA-AAACTTTGTTTATTACG 10434 || ||||| | ||||||| ||| || |||||| ||||||| |||| || |||||| Sbjct 328 AGAGTATAGTAATAATTATTAAGTT---GTAAATGTGATAAATAAACATTA---ATTACG 275 Query 10435 CATCGATCATGGACACGATTCACATTACTTGTA 10467 ||||||||||||||||||||||||||||||||| Sbjct 274 CATCGATCATGGACACGATTCACATTACTTGTA 242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 55781957144480