Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20nemesis_20[genbank_20GCA_5F002245505.1_202017-08-10] 40,359 sequences; 808,524,533 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq409 98.7 1e-15 >seq409 Length=488447 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 21770 TACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCT 21829 ||||||||||| || | |||||| || ||||| || || || || || |||| ||||| Sbjct 76234 TACATTTCAGAGTGAACATTTTCCATAGCTATTTGGAACCCATAGAAGAATCTGGCCTCA 76293 Query 21830 GAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTG 21889 | | ||||||||| |||| || | | | |||||||| || ||||||||| Sbjct 76294 GTAACTTGAACCTCTTGTGAAAACCGCTCCACTAGATTTTCATTGACAATTCCATCAGAT 76353 Query 21890 GCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTTTTC 21949 |||||||||||||| | | | |||||| |||| || || ||| |||| ||| | Sbjct 76354 GCGGCAAAAAATGCTAGAACGTGTTTTATGAAATGTCTCTCACAATCCTTTAAACTTTCC 76413 Query 21950 CAATCTAATAAATC 21963 ||||| |||||| Sbjct 76414 CAATCCGGTAAATC 76427 Score = 91.5 bits (100), Expect = 2e-13 Identities = 117/156 (75%), Gaps = 4/156 (3%) Strand=Plus/Plus Query 21112 TATAAAA-ATATTT-ATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCttttttt 21169 ||||||| || || |||||||| |||||||| |||| || |||||||| || | Sbjct 74145 TATAAAACATGTTGGATTTAAAACTCAGCATCCAATGTAAACACATTATCCTCAGGATCA 74204 Query 21170 GACATAATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCT 21229 | ||| | |||| ||| || || |||| ||| | || || ||||| || ||||||||| Sbjct 74205 GCCATTACTCCCCATTTCTGGTATTCACCTACTTTCTTCTCAAAAAAGTTGGTCTTTCCT 74264 Query 21230 TCCAATGATAT-AGATTCCATAAAATCAAATGGATT 21264 || || || || || || |||||| ||||||||||| Sbjct 74265 TCTAAAGAGATGAGGTT-CATAAAGTCAAATGGATT 74299 Score = 82.4 bits (90), Expect = 8e-11 Identities = 157/225 (70%), Gaps = 5/225 (2%) Strand=Plus/Plus Query 21500 TCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTT 21559 ||||| || ||| | |||||| || || || || ||||| | ||| | ||| ||| Sbjct 75179 TCATCTCTTGATATAAGCTCATTACTGAAAGTCAAGCCAGGCATGAGTCCACGCTTCTTT 75238 Query 21560 AACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCA 21619 |||||||| || || ||||| ||||| || ||||| ||||| || || |||||||| Sbjct 75239 AACCAAAAGATAGAAGCAAAACTGCCTGAGAAAAAAATACCCTCTACAGCTGCAAATGCT 75298 Query 21620 ACTAAT-CGTTCACCGTATGTAG-ATTCTTTATCCAATATCCATTTTTCTGCCCATTTTG 21677 | |||| ||||| || | || | | | || | | ||||||| | |||||| | | Sbjct 75299 A-TAATACGTTCTCCAAACGTGGCAGTTTTGCTTGCA-ATCCATTGTAGTGCCCAGTCCG 75356 Query 21678 CCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTTAA-AAGA 21721 |||| | ||||| |||| | || || ||||| || || |||| Sbjct 75357 CCTTCTTTTTAACACAAGGCAAAGTTTCTATAGCATTAAATAAGA 75401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531632462695160