Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20nemesis_20[genbank_20GCA_5F002245505.1_202017-08-10] 40,359 sequences; 808,524,533 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq4459 609 3e-169 seq409 102 1e-16 >seq4459 Length=154925 Score = 609 bits (674), Expect = 3e-169 Identities = 1207/1777 (68%), Gaps = 20/1777 (1%) Strand=Plus/Minus Query 61986 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 62045 || || | ||| ||||| || | | | ||| ||||| ||||||| ||| ||||| || Sbjct 144009 TTATCTACTGTAAATTGGATTGCATTTGCTGCAGGTTTTGTACGTAAATAATACATGCCT 143950 Query 62046 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 62105 ||||||| ||| | |||| | |||||||| || ||| ||||| |||| | || Sbjct 143949 GTTTTTAAACCCATTTTCCAAGCATAAAAATGTATGGACGTCAGTTTACCATAATTTGGT 143890 Query 62106 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 62165 || |||| ||| ||||| | ||| |||||||| || || || || || || || |||||| Sbjct 143889 TCAGCTACATGAATATTAAAAGACTGACTTTGGTCTATAAATGCACCTCTATCAGCAGCC 143830 Query 62166 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATC 62224 || | || | || || | ||||||||| | || ||||| || || || | |||| Sbjct 143829 ATCTGAATAGTAGTTTTCACAGAAATTTCCCATACTGTCTTATACAAATCTCTGA-TATC 143771 Query 62225 TTCTGGAAG-GTTTG--TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGAT 62281 || |||| |||| ||||||||| || ||| || | ||| ||| || || Sbjct 143770 TTTGGGAATAGTTTCAATATTCTGAACTGAACCATTATTATGAAGAATAAGATTTTTCAT 143711 Query 62282 CTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTG 62341 ||||| | |||||| | | | || ||| |||| | ||||| ||||||| ||||| Sbjct 143710 GTCATCGTCCCATAAATCTGCTTGAGTCAAATCTCTTAAAAGATGATGATTAACGACTTG 143651 Query 62342 AAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTC 62401 |||||| || || ||||||| | ||| ||||| || | ||||| | || || Sbjct 143650 AAATTCGCCTGATAATACTCGTCTTTGGTATATATTTGAAGTGAATGGTTCAAAGGATTC 143591 Query 62402 ATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATT 62461 |||||| || | || ||||| || ||||| || |||||||| |||| | | | ||| Sbjct 143590 ATTATTGCCAAGTATCTGAGCCGTAGATGCCGTTGGCATAGGCGCCAGTAGCAGAGAATT 143531 Query 62462 TCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGAC 62519 | || || ||||| | ||||| ||||| |||| |||||| ||| ||||| | Sbjct 143530 ACGAATTCC--ATGTTTAGCTATTTTTTCTTTAAGAGCAACCCAATCCCAGAGATCAGTG 143473 Query 62520 GGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCTACATA 62578 || ||| | ||| || | || | | || | ||| |||| Sbjct 143472 GGAGTCTTATTCCACATATCAAATTGCAAAATCCCTTGGCTAACAGGACTA-CCTTCATA 143414 Query 62579 TGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATA 62638 || | || ||| || ||||| |||| |||||| || || || || || |||||||| Sbjct 143413 TGAACTATAAACTCCCTCTTTCTCTGCTAATTCACAGCTAGCTTCCAAAGCTCCGTAATA 143354 Query 62639 AATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATT 62698 || || || || |||| | |||| ||||| || ||| | || || Sbjct 143353 GATAGTCTCAAATATCTGTTGGTTTAACAACAATGCTTTTTCACTTTCATAAGGGTAGCG 143294 Query 62699 TAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTT 62758 | || | ||| || || ||||| ||||| || |||||||| || |||||||||| | | Sbjct 143293 CATCAGCACAAAGGCATCAGCTAAACCTTGGACTCCAATACCTATTGGTCTATGTCGCAT 143234 Query 62759 ATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATT 62818 ||| ||| ||| ||||||||||| ||||||||||| | ||||||||||||||| || || Sbjct 143233 ATTGGAGTTTTTAGCTTCTGGAACTGGATAATAATTGACATCTATAATTTTATTAAGGTT 143174 Query 62819 TCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCC---CATCTAT 62875 | || | ||| || || || | || ||||| || | |||| | Sbjct 143173 TTGTGTTATGATTTTTGTAACTTCTTTTAACTTTCCAAAATTGTATGTTCTATCATCATT 143114 Query 62876 TACAAACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGC 62935 ||||||||| ||||| |||| ||| || | |||||| || ||||| |||| | | Sbjct 143113 TACAAACATATTCAAAGCAATAGAAGCTAAATTACATACTGCTACTTCATCTACTGATGT 143054 Query 62936 ATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATT 62995 ||||| || ||| || || || ||||||||||| || || ||||||| ||||| ||||| Sbjct 143053 ATATTCTACTATTTCTGTACATAGATTACTACATTTAATTGTTCCTAGATTTTTCTGATT 142994 Query 62996 ACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGA 63055 ||||||| ||||||| | ||| || || | ||||||||||| || ||||||| || | Sbjct 142993 ACTCTTTCTGTTACATGAATCTTTGTATAACATGAATGGAGTGCCTGTTTCAACTTGTGC 142934 Query 63056 TTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCT 63115 ||||| ||| || ||||| | ||| | ||| ||| | | || | || ||| || Sbjct 142933 TTCTACAATAGCCTTCCATAAAACTTGTGCCCTTACTT--GTTTGACAAATCTTTTTTCA 142876 Query 63116 TTCGTATAGTGT--ATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGA 63173 ||| ||| | | ||||| ||| ||||| ||||||||| || |||| |||||| Sbjct 142875 TTCTCATACTTTTCATACAGAGCTTCAAACTCTTCTCCCCAACAATCTGCCAAACCAGGA 142816 Query 63174 CATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGA 63233 || |||| ||||||||||| ||| | | | | | | |||| ||||||||| | | Sbjct 142815 CAGTCATGGGGACACATCAAACTCCAATTTTCATTTTTTTCAACTCTTTTCATAAACAAA 142756 Query 63234 TCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTC 63293 || || ||||| | ||| ||| | || || | || | ||| || || || |||||| Sbjct 142755 TCTGGTATCCATAAAGCATAAAACAATTCCCTAGCTCGAACTTCTTCTTTGCCAGTATTC 142696 Query 63294 TTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATA 63353 ||||| ||||| | ||| | | | ||| |||||||| ||||| || |||| || | Sbjct 142695 TTTTTCAGATCTAAAAACTCAAACACATCTGAATGCCATGGTTCTAAATATACAGCAAAT 142636 Query 63354 ACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTC 63413 | || || || ||||| || || ||||||| ||||| || ||| | ||||| ||||| Sbjct 142635 GCCCCTGGACGCTTGTTACCACCTTGATCTACATATCTGGCTGTGCTGTTATATACTCTT 142576 Query 63414 AACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCA 63473 |||||||| | || || ||||||| |||||| || || | ||| | | || | || Sbjct 142575 AACATTGGGACAAGTCCATTTGATACACCATTTGTGCCAGCTATACATGTACCTTTAGCT 142516 Query 63474 CGAATATTACTAA-TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCG 63532 | ||| || ||| || || || || ||||| |||||| || || || ||| | Sbjct 142515 CTGATACAGTGAACATGA-AGCCCAATGCCACCTGCAGATTTAGATATCAAGGCACATTG 142457 Query 63533 TTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCT 63592 ||| | |||||||| || ||||| || || ||||| ||||| | || ||||| Sbjct 142456 TTTCAGAGTGTCATATATTCCCTCAATACTGTCATCTTTCATGGCCAATAAGAAACAAGA 142397 Query 63593 AGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCA 63652 |||| ||| | | ||| | ||| |||||| |||||| ||||| || || | Sbjct 142396 TGACAATTGAGGTCTTGGAGTAGCAGCAGAAAATAAAGTAGGACTGGCGTGAGTGAAATA 142337 Query 63653 TTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCC 63712 || ||||| | || || || || | ||||||||| || || || | ||| ||||| Sbjct 142336 CTTCTCAGACAATAAGTTATAGGTGTTAATAGCTGAATCAATGTCTTCTCCATGTATTCC 142277 Query 63713 TACTGCGACACGCATTAACATGTGCTGAGGTCTTTCA 63749 | || |||||||||| ||| || || ||||| ||| Sbjct 142276 AATAGCTACACGCATTAGCATATGTTGTGGTCTCTCA 142240 >seq409 Length=488447 Score = 102 bits (112), Expect = 1e-16 Identities = 133/182 (73%), Gaps = 3/182 (2%) Strand=Plus/Plus Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 || ||||| || |||||||| || | |||||| || ||||| || || || || || Sbjct 75215 CCAGGCATGAGTCCACGCTTCTTTAACCAAAAGATAGAAGCAAAACTGCCTGAGAAAAAA 75274 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGT--CATGTA 33481 || || ||||| || ||||| || |||| | |||||| | ||| | | | || | Sbjct 75275 ATACCCTCTACAGCTGCAAATGCTATAATACGTTCTCCAAACGTGGCAGTTTTGCTTGCA 75334 Query 33482 -TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33540 |||| | | | ||||| || ||||||||||| |||||||||| |||||||| |||||| Sbjct 75335 ATCCATTGTAGTGCCCAGTCCGCCTTCTTTTTAACACAAGGCAAAGTTTCTATAGCATTA 75394 Query 33541 AA 33542 || Sbjct 75395 AA 75396 Score = 89.7 bits (98), Expect = 6e-13 Identities = 87/111 (78%), Gaps = 1/111 (1%) Strand=Plus/Plus Query 33778 TCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 33837 ||| || || |||| |||| ||| |||||||| || |||||||| || || || || ||| Sbjct 76494 TCAATGTTACCTTT-GATAAATCCACTTCTTCAACAGTCCAAAAGGAAGCTTCGGCTTTT 76552 Query 33838 TTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTA 33888 || ||||| | ||| || || ||| ||||| ||||| |||||||||||| Sbjct 76553 TTGTACATTTCCCAAATATCTGGATACTGGATAGGGAATATAACAAATCTA 76603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622632930924440