Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20nemesis_20[genbank_20GCA_5F002245505.1_202017-08-10] 40,359 sequences; 808,524,533 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq4146 237 1e-57 seq4182 122 7e-23 seq3626 100 2e-16 seq688 89.7 4e-13 seq2867 86.0 5e-12 seq2492 84.2 2e-11 >seq4146 Length=100757 Score = 237 bits (262), Expect = 1e-57 Identities = 354/498 (71%), Gaps = 6/498 (1%) Strand=Plus/Minus Query 32170 CGTCGCTGCGTATTTTGTAGAATGGGGCGTGTACGGGCGCAATTTCCCAATAGACAAAGT 32229 ||||| || |||||||| || ||||| || ||| | || |||||| |||| || || Sbjct 16629 CGTCGGAGCTTATTTTGTGGAGTGGGGTGTTTACCCTAGAAAATTCCCAGTAGATAAGGT 16570 Query 32230 GCCGTTGCCCAATTTGTCGCATCTGTTGTACGGATTTATTCCTATTTGCGGCGGCGACGG 32289 || | || ||| | | ||||| | ||||||||||| || || || ||||| ||||| Sbjct 16569 ACCCATTCCAAATCTTACACATCTTCTTTACGGATTTATCCCCATCTGTGGCGGTGACGG 16510 Query 32290 ACTAAACGATGCCCTCAAAACGATACCG--GGCAGTTTTGAGGCGCTGCAACGTTCGTGC 32347 | | ||||| | | ||| || | || || ||||| | || ||||| | || ||| Sbjct 16509 AATTAACGA--CAGTTTAAAAGAAATCGAAGGAAGTTTCCAAGCTTTGCAAAGATCTTGC 16452 Query 32348 AAAGGCCGCGCAGACTTTAAGGTTGCCATTCACGACCCTTGGGCCGCAATACAAAAACCG 32407 | || || | ||||| || ||| | || || ||||||||||| || |||||||||| Sbjct 16451 AGCGGGCGAGAGGACTTCAAAGTTTCTATCCATGACCCTTGGGCAGCTTTACAAAAACCA 16392 Query 32408 CAGAAGGGCGTGTCTGCGTGGAACGAACCCTACAAAGGCAACTTTGGCCAATTGATGGCG 32467 |||||||| |||| | ||||||||||| ||||||||||||||||| ||| ||||| | Sbjct 16391 CAGAAGGGTTTGTCCTCCTGGAACGAACCTTACAAAGGCAACTTTGGACAACTGATGTCT 16332 Query 32468 GCCAAGTTGGCAAACCCTCACATAAAAATTTTACCATCTATTGGCGGGTGGACGTTGTCG 32527 || || | ||| | | || || | ||||| || || || ||||| || | Sbjct 16331 TTGAAACAAGCTAGACCTGATTTGAAGGTTCTTCCATCAATCGGAGGCTGGACACTGGCA 16272 Query 32528 GATCCCTTTTATTTTATGCACGACGCGG-AAAAACGGCACGTGTTTGTCGATTCCGTCAA 32586 ||||| || || ||| | | || || ||||| | ||| ||||| | || || || Sbjct 16271 GATCCATTCTACTTTTTTGATGATAAGGTAAAAAGAGATCGT-TTTGTGGCATCAGTGAA 16213 Query 32587 AGAGTTTTTACAGGTTTGGAAATTCTTTGACGGAGTGGACATTGATTGGGAGTTCCCGGG 32646 ||| || | || |||||||||||| || || || |||||||||||||||||||| || Sbjct 16212 AGACTTCCTCCAAACTTGGAAATTCTTCGATGGTGTTGACATTGATTGGGAGTTCCCTGG 16153 Query 32647 CGGCAAAGGTGCCAACCC 32664 || |||||||| || || Sbjct 16152 TGGAAAAGGTGCTAATCC 16135 >seq4182 Length=188933 Score = 122 bits (134), Expect = 7e-23 Identities = 168/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 115282 AAAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTC 115341 || |||||| || || || ||||| || ||||| |||||||| ||| |||| |||| | Sbjct 74502 AACAATGCAGATATTCGTAAAAACCCTTACGGGGAAAACCATCACCCTCGAGGTGGAGGC 74443 Query 115342 CAGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGA 115401 ||| ||| ||| | | |||||| |||||| ||||||||||| | || || Sbjct 74442 TTCCGATACTATTGAAAATGTAAAAGCCAAAATTCAAGATAAAGAAGGTATTCCACCGGA 74383 Query 115402 TCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTA 115461 ||||||| | | || | ||| || ||||| | ||||||| | || | |||| || Sbjct 74382 TCAGCAACGTTTGATCTTTGCTGGTAAACAGCTGGAAGATGGCCGCACATTATCCGACTA 74323 Query 115462 TAACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAAAA 115516 || ||||| || |||||||| ||||| | |||||||| || ||||||| ||| Sbjct 74322 CAATATTCAGAAGGAGTCTACGTTACATCTTGTGTTGAGGTTAAGAGGAGGTAAA 74268 >seq3626 Length=201135 Score = 100 bits (110), Expect = 2e-16 Identities = 164/234 (70%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 115282 AAAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTC 115341 ||||||||| || || || || || ||||| ||||||||||| ||| | || ||| | Sbjct 59061 AAAAATGCAGATATTCGTGAAGACACTCACTGGAAAAACCATAACCTTGGAGGTTGAG-C 59119 Query 115342 CAGC-GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTG 115400 || | || || ||| | | |||||| |||||| || |||||||| |||| | Sbjct 59120 CATCGGATACAATTGAAAATGTAAAAGCTAAAATTCAGGACAAAGAAGGTATCCCTCCCG 59179 Query 115401 ATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATT 115460 ||||||| ||||||| | || || ||||| | ||||||| || | | |||| Sbjct 59180 ATCAGCAGCGACTTATCTTCGCAGGGAAACAGCTTGAAGATGGGCGCACACTCTCTGATT 59239 Query 115461 ATAACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 | ||||||||||| || ||||| | || |||| || | || ||||| |||| Sbjct 59240 ACAACATTCAAAAGGAATCTACGCTTCACTTGGTATTACGCTTACGAGGTGGAA 59293 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/200 (72%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 ||||||||||||||| ||||| ||||| || || || |||||| | ||| ||| ||| Sbjct 59292 AATGCAAATTTTTGTTAAAACTCTCACAGGTAAGACGATTACCTTAGAAGTAGAG-CCAT 59350 Query 115345 C-GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403 | || ||| | | | | ||||| ||||| || ||||||||| |||| || | Sbjct 59351 CAGATACTATCGAAAACGTAAAGGCGAAAATCCAAGACAAAGAAGGCATCCCTCCGGACC 59410 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 ||||| | || |||| ||| || ||||| | ||||| | ||| | | || || | Sbjct 59411 AGCAACGGCTCATTTTTGCTGGAAAACAGCTGGAAGACGGACGTACCCTTTCTGACTACA 59470 Query 115464 ACATTCAAAAAGAGTCTACT 115483 |||||||||||||||| ||| Sbjct 59471 ACATTCAAAAAGAGTCCACT 59490 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || ||||| || || || || ||||| |||||||| | ||| || | Sbjct 59521 ATGCAGATCTTTGTTAAGACTCTTACTGGAAAGACCATTACTTTGGAAGTTGAACCTTCA 59580 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||||| ||| | || ||| ||||| || || |||||| |||| || || Sbjct 59581 GACACAATTGAGAATGTCAAAGCCAAAATCCAGGACAAGGAAGGCATCCCTCCAGACCAA 59640 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || |||| || | ||| || |||||||| ||||||| |||| || | || || ||| Sbjct 59641 CAGCGACTCATCTTTGCTGGAAAACAATTGGAAGATGGGCGAACCCTGTCTGACTACAAC 59700 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 |||||||||||||| ||| | || | || || | ||||||| || Sbjct 59701 ATTCAAAAAGAGTCCACTCTTCACCTTGTACTGCGTCTGCGAGGTGG 59747 >seq688 Length=109112 Score = 89.7 bits (98), Expect = 4e-13 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 109047 CGGATTTTATTATTTGGGTCGCGGCGACGAAGTGCGCTGCGCGTTTTGCAAAGTGGAAAT 109106 |||||| || ||| | || || ||||| ||||||||||| || || |||||||| ||||| Sbjct 9875 CGGATTCTACTATCTAGGCCGGGGCGATGAAGTGCGCTGTGCTTTCTGCAAAGTCGAAAT 9816 Query 109107 AATGCGTTGGCTTGAGGGTGACGACCCAGCGGTTGACCATAAAAGATTAGCGCCACAGTG 109166 ||| | ||| | || || ||||| || || || || ||| |||| | || || || || Sbjct 9815 CATGAGATGGGTGGAAGGGGACGATCCTGCTGTAGATCATCAAAGGTGGGCACCCCAATG 9756 Query 109167 TCCGTTC 109173 ||| ||| Sbjct 9755 TCCATTC 9749 >seq2867 Length=333652 Score = 86.0 bits (94), Expect = 5e-12 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 112403 GTTGCCTAGGTCACCGACGTGTCGCTCGGCGGCGTCGGGTGCGCCATGGTCTTGGTTCGT 112462 |||||| || ||||| ||||||| ||| ||||| || ||||| || || || | | Sbjct 230855 GTTGCCCAGATCACCTACGTGTCTGACGGATGCGTCAGGGGCGCCGTGCTCCTGTTGCCG 230914 Query 112463 GGGGTTAAAATGCTCGCCCGCCGACGTGCACCCGTTGCTAGTGTCGCCAAACTCGTGCAC 112522 ||| || || ||| | |||||||||||||| ||||| | |||| |||||||| || | Sbjct 230915 GGGATTGAAGTGCGCCCCCGCCGACGTGCAGCCGTTTGTGTTGTCTCCAAACTCATGGAT 230974 Query 112523 GTGAAAACCGTG 112534 ||| || || || Sbjct 230975 GTGGAACCCATG 230986 >seq2492 Length=83244 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| ||||||||||| || | || || ||||||||||| | ||| ||| ||| | Sbjct 41456 ATGCAGATTTTTGTCAAGACCTTGACTGGCAAAACCATTACTCTTGAAGTTGAG-CCATC 41398 Query 115346 -GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 |||||| ||| | | || || |||||| || ||||| || |||| || || Sbjct 41397 GGACACTATTGAAAATGTTAAGGCCAAAATTCAAGACAAAGAGGGTATCCCACCAGACCA 41338 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| || || || | ||| ||||| || | ||||||| || | | || || || Sbjct 41337 GCAGAGGCTCATCTTTGCCGGCAAGCAGCTTGAAGATGGTCGTACACTCTCTGACTACAA 41278 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 || |||||||| || || | ||| |||| |||||||| |||| || Sbjct 41277 TATCCAAAAAGAATCCACACTCCATTTGGTACTGAGATTGAGAGGTGG 41230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425134783787080