Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20nemesis_20[genbank_20GCA_5F002245505.1_202017-08-10] 40,359 sequences; 808,524,533 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq688 129 5e-25 seq2492 84.2 2e-11 >seq688 Length=109112 Score = 129 bits (142), Expect = 5e-25 Identities = 170/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 105432 TCCGAGTCTGCACGTTTAAAAACTTTTGAGGATTGGCCACTTAGTTTAAAACAAAGGCCA 105491 ||||| |||| ||| | || |||| |||||||| | ||| | ||||| ||| Sbjct 9616 TCCGAAGCTGCCCGTCTCCGTACATTTGTCGATTGGCCTCGCAGTATGCGACAAAAGCCT 9557 Query 105492 GAGCAATTGGCCGAAGCCGGTTTTTACTACACCGGCAAAGGTGATAAAGTCAAATGTTTT 105551 ||| | | |||||||| ||||| | |||||| || |||| || ||| ||||| ||| Sbjct 9556 GAGGAGCTAGCCGAAGCTGGTTTCTTCTACACTGGTCAAGGAGACAAAACGAAATGCTTT 9497 Query 105552 TATTGCGACGGCGGCCTTAAGGATTGGGCAAACGCCGACGAACCGTGGGAGGAACATGCA 105611 | || ||||| || | ||||| |||| ||| | ||| || |||||| |||||||| Sbjct 9496 TTCTGTGACGGTGGTTTGAAGGACTGGGAAAATGACGATATTCCCTGGGAGCAACATGCA 9437 Query 105612 CGTTGGTTTGATCGCTGTTCGTTCGTAAAACTGGTCAAAGGACACGACTACGTGCA 105667 |||||||| ||||| ||| | | ||| |||| |||||||||| || || || || Sbjct 9436 CGTTGGTTCGATCGATGTGCCTACGTCCAACTTGTCAAAGGACGAGAGTATGTACA 9381 Score = 105 bits (116), Expect = 6e-18 Identities = 100/128 (78%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 105162 AACGGGTTCTACTATTTGGGGCGCGCGGACGAAGTGCGCTGCGCGTTCTGCAAAGTGGAA 105221 ||||| ||||||||| | || || | || ||||||||||| || ||||||||||| ||| Sbjct 9877 AACGGATTCTACTATCTAGGCCGGGGCGATGAAGTGCGCTGTGCTTTCTGCAAAGTCGAA 9818 Query 105222 ATAATGCGCTGGTTGGAGGGCGACGACCCGGCCGTAGATCATAAACGATGGGCGCCACAG 105281 || ||| | ||| |||| || ||||| || || ||||||||| || | ||||| || || Sbjct 9817 ATCATGAGATGGGTGGAAGGGGACGATCCTGCTGTAGATCATCAAAGGTGGGCACCCCAA 9758 Query 105282 TGCCCGTT 105289 || || || Sbjct 9757 TGTCCATT 9750 >seq2492 Length=83244 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| ||||||||||| || |||| |||||||||||||| | ||| || || Sbjct 41456 ATGCAGATTTTTGTCAAGACCTTGACTGGCAAAACCATTACTCTTGAAGTTGAGCCATCG 41397 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || || ||| | || || |||||| |||||||| || | || || || Sbjct 41396 GACACTATTGAAAATGTTAAGGCCAAAATTCAAGACAAAGAGGGTATCCCACCAGACCAG 41337 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTATA 111364 || ||||| || | ||| ||||| || | |||||| || | ||| | | || || | Sbjct 41336 CAGAGGCTCATCTTTGCCGGCAAGCAGCTTGAAGATGGTCGTACACTCT--CTGACTACA 41279 Query 111365 ATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 |||| ||||||||||| ||||| ||||| || || | || | ||||| Sbjct 41278 ATATCCAAAAAGAATCCACACTCCATTTGGTACTGAGATTGAGAGGTGG 41230 Score = 84.2 bits (92), Expect = 2e-11 Identities = 161/233 (69%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 111184 AAAATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCC 111243 || ||||| |||||||| || || | ||||||||||| |||||| | || ||||| Sbjct 41915 AACATGCAGATTTTTGTAAAGACCCTCACCGGCAAAACTATTACCCTAGAGGTAGAACCT 41856 Query 111244 AGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTC-GA 111302 || || ||| | ||||| ||||| |||||||| || | |||| | || Sbjct 41855 TCAGACACTATTGAAAATGTAAAGGCTAAAATCCAAGACAAAGAGGGTAT-CCCGCCAGA 41797 Query 111303 TCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGAT 111360 || || |||||||| | ||| || || || | |||||| || | ||| | | || Sbjct 41796 CCAGCAGAGGCTTATCTTTGCTGGTAAGCAGCTTGAAGATGGTCGCACACTCT--CTGAC 41739 Query 111361 TATAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || ||||| ||||||||||| ||||| ||||| || || | || | ||||| Sbjct 41738 TACAATATCCAAAAAGAATCCACACTCCATTTGGTACTGAGATTGAGAGGTGG 41686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422831917067800