Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20nemesis_20[genbank_20GCA_5F002245505.1_202017-08-10] 40,359 sequences; 808,524,533 total letters Query= NC_008952.1 Length=4063 Score E Sequences producing significant alignments: (Bits) Value seq309 154 4e-34 seq423 111 4e-21 >seq309 Length=88796 Score = 154 bits (170), Expect = 4e-34 Identities = 122/143 (85%), Gaps = 4/143 (3%) Strand=Plus/Plus Query 999 CTTTTAGATTG--CATTCTAAAAA-GTTGAACAAT-TCGTTGCTAATTCAACTTTTCGTA 1054 ||||||| || ||||||||||| |||||||| | |||||| || ||||||||||||| Sbjct 66345 CTTTTAGGCTGTACATTCTAAAAAAGTTGAACAGTCTCGTTGAGAACTCAACTTTTCGTA 66404 Query 1055 CGTTGCGACGTGTTCTCTGATCGGCTCGAGGCGCTGGTGATAAGCCTGAGTAGAATACAT 1114 ||||||||| |||||||||| ||| ||| |||| ||||| ||||||||| ||||||| Sbjct 66405 TGTTGCGACGCGTTCTCTGATGGGCCCGAATGGCTGTTGATACGCCTGAGTAAAATACAT 66464 Query 1115 GGTTTTTTCTTCAAAGATAGCAC 1137 | ||||||||||||||||||||| Sbjct 66465 GTTTTTTTCTTCAAAGATAGCAC 66487 Score = 154 bits (170), Expect = 4e-34 Identities = 191/262 (73%), Gaps = 21/262 (8%) Strand=Plus/Plus Query 1131 ATAGCACC-GTCGCTGCATCTCGCTCTATTGTGTGACCGCGAGCTCCATGCGGCGTTGGA 1189 ||||||| ||||| ||| |||| || ||| || |||| || ||| |||| ||| Sbjct 66765 ATAGCACAAGTCGCCGCACCTCGATCCGTTGAGTTACCGAGACCTCGATGCAAACGCGGA 66824 Query 1190 GAGTCACGTGCGTCGCTGTCTCATCGGTAGCTCGATGGTGCGGCCGAGATACGGAGCACC 1249 |||||||| | || |||| | | ||| ||||||||||||| | | |||||||||| Sbjct 66825 TAGTCACGTACAGAGCGGTCTTAGCTGTAACTCGATGGTGCGGTCAAAGCACGGAGCACC 66884 Query 1250 TGGTTGTCGTGGACGTTAATC---TTGTACGGAGTTGGAAAAAGTTAGCATGTC-AAGAG 1305 |||||| ||| | ||||||| |||||||||||| ||||||||||||||||| || | Sbjct 66885 TGGTTGGAGTGCAAGTTAATCTGTTTGTACGGAGTTTGAAAAAGTTAGCATGTCAAAAAC 66944 Query 1306 GTATGCACTTTGTACGCTTCGAGCATTGACAACATTGGGTACAAACTCTACTCCAGTTTG 1365 || |||||| |||| ||| | |||||||||||||||||||||| Sbjct 66945 GTCTGCACT----------------TTGATCACAGTAGGTACAAACTCTACTCCAGTTTC 66988 Query 1366 TAAACAAACCGCATTACAACAT 1387 |||||||| | || |||| || Sbjct 66989 GAAACAAACAGAATAACAAAAT 67010 Score = 116 bits (128), Expect = 1e-22 Identities = 119/151 (79%), Gaps = 6/151 (4%) Strand=Plus/Plus Query 154 ATGCATTTGACTCAAAGTGCAGTTGAATTTTTTCACCGCAAACGGT-GCTCGCTAGCCTC 212 ||||||||| |||| | |||||||| |||||||||||| ||||| | | |||||||| | Sbjct 65773 ATGCATTTGTCTCAGAATGCAGTTGCATTTTTTCACCGAAAACGATGGTTCGCTAGCTTT 65832 Query 213 CGGGTACGCTTGTAGATGAAGTCTAGGCATAAATCTCTGCAATAGATTCTCAGGTGTTGC 272 | | ||| || | || | ||||| ||| ||| ||||| | ||| || |||||||||| Sbjct 65833 CTGTCACG-TTCTGTATAAGGTCTAAGCACAAACCTCTGTA--AGACTCGCAGGTGTTGC 65889 Query 273 ATAGAAAGGTAAGAAGATAAACGGCGCAGAG 303 |||||||||| |||||||||| |||||| Sbjct 65890 --AGAAAGGTAACAAGATAAACGCTGCAGAG 65918 >seq423 Length=337546 Score = 111 bits (122), Expect = 4e-21 Identities = 88/106 (83%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 1288 AAGTTAGCATGTCAAGAGGTATGCACTTTGTACGCTTCGAGCATTGACAACATTGGGTAC 1347 ||||||||||||||| | ||||||||||||||| ||||| |||||| ||||| | || Sbjct 143118 AAGTTAGCATGTCAAAACGTATGCACTTTGTACTGATCGAGTATTGACCACATTAGAGAC 143177 Query 1348 AAACTCTACTCCAGTTTGTAAACAAACCGCATTACAACATCTATTT 1393 ||||||||||||||||| |||||||| || | ||| | | ||||| Sbjct 143178 AAACTCTACTCCAGTTTAAAAACAAACAGCGTGACATCTTATATTT 143223 Score = 98.7 bits (108), Expect = 3e-17 Identities = 92/116 (79%), Gaps = 1/116 (1%) Strand=Plus/Plus Query 2327 TTTTACTCTGTAAACCGTGCGGTTTATAATATTTCTTATTGTAATGCTTCTTTTTCTTCA 2386 ||||| ||||| | ||||||| | || ||| || ||| || | ||||||| |||| || | Sbjct 143790 TTTTAATCTGTTAGCCGTGCGATGTACAATTTTGCTTCTTATTATGCTTCATTTTTTTTA 143849 Query 2387 CTATTTTAAATAAATATTATTATAAAATATTTCTTGGTATCATTGACGTAGAATAA 2442 || |||||| ||| | |||| ||| ||||||||||||||||||| |||||||| Sbjct 143850 CTTTTTTAA-TAAGAAATATTGAGAAACATTTCTTGGTATCATTGACATAGAATAA 143904 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 12883910188180