Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20nemesis_20[genbank_20GCA_5F002245505.1_202017-08-10] 40,359 sequences; 808,524,533 total letters Query= NC_008993.1 Length=5530 Score E Sequences producing significant alignments: (Bits) Value seq5319 109 2e-20 seq9577 107 7e-20 seq2222 102 3e-18 seq8582 98.7 3e-17 seq5081 98.7 3e-17 seq194 98.7 3e-17 seq4485 96.9 1e-16 seq390 96.9 1e-16 seq3452 95.1 4e-16 seq506 87.8 6e-14 seq4930 86.0 2e-13 seq3090 84.2 8e-13 seq1558 84.2 8e-13 seq149 84.2 8e-13 seq1670 82.4 3e-12 seq1616 82.4 3e-12 seq4035 80.6 9e-12 seq1700 80.6 9e-12 seq882 80.6 9e-12 seq821 80.6 9e-12 seq4350 78.8 3e-11 >seq5319 Length=83754 Score = 109 bits (120), Expect = 2e-20 Identities = 149/211 (71%), Gaps = 10/211 (5%) Strand=Plus/Minus Query 3952 CGGAAAGCGGCAACTTTCGGGCCGCTGCGCTAAACGAAGTTGCCACATTCCGGCTACGTC 4011 |||||| ||||||||| | ||||||| |||||||||||||| || |||||||| |||| Sbjct 28194 CGGAAATAAGCAACTTTCCGCCCGCTGCACTAAACGAAGTTGCAACTTTCCGGCTCCGTC 28135 Query 4012 GGGTAGAAAAATAGTGTACATACCTCGGCCAGAAAAAAGTAAAGCCTCAGACCACATGTT 4071 | | || |||||| |||| || ||| ||| ||||| ||||||||||| |||| || Sbjct 28134 GAGCAG-AAAATA-CATACACTCCCCGGGCAGTAAAAAAGAAAGCCTCAGATCACAATTT 28077 Query 4072 TGTTTGGNNNNNNNNNNNNNNNNNNNNNTCGGCCAACAGTTACATGTGATCTGAGACTTT 4131 | | | ||| |||||| ||||| ||| ||||||||| Sbjct 28076 CTTCTAG--------CCTGGGCTTCGCTTCGACCAACAATTACAATGGATGTGAGACTTT 28025 Query 4132 TGTTATTTTTCTGGCCTACGTATGTAATATA 4162 | ||||||| || |||| | |||||||||| Sbjct 28024 TCTTATTTTATTGTCCTAGGGATGTAATATA 27994 >seq9577 Length=48085 Score = 107 bits (118), Expect = 7e-20 Identities = 148/212 (70%), Gaps = 16/212 (8%) Strand=Plus/Plus Query 3952 CGGAAAGCGGCAACTTTCGGGCCGCTGCGCTAAACGAAGTTGCCACATTCCGGCTACGTC 4011 ||||||| | |||||||| ||||||||||||||||| || |||| |||||||| | | Sbjct 15956 CGGAAAGAGACAACTTTCCTTCCGCTGCGCTAAACGAAATTCCCACTTTCCGGCTGAGAC 16015 Query 4012 GGGTAGAAAAATAGTGTACATACCTCGGCCAGAAAAAAGTAAAGCCTCAGACCACATGTT 4071 ||| |||||||||| ||| ||||||| || ||||| ||| |||| | | || ||| Sbjct 16016 GGGCAGAAAAATAGCAAACACACCTCGGATAGTAAAAACGAAACCCTCTAATCGCAAGTT 16075 Query 4072 T---GTTTGGNNNNNNNNNNNNNNNNNNNNNTCGGCCAACAGTTACATGTGATCTGAGAC 4128 | || | | ||| |||| | |||||||| |||| |||| Sbjct 16076 TTCAGTATCG-------------GCTTTGTTTCGCCCAATAATTACATGTTATCTAAGAC 16122 Query 4129 TTTTGTTATTTTTCTGGCCTACGTATGTAATA 4160 |||| ||||||||||| | | | |||||||| Sbjct 16123 TTTTCTTATTTTTCTGTCATCGGGATGTAATA 16154 >seq2222 Length=174721 Score = 102 bits (112), Expect = 3e-18 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 3936 TTTTCTGCCCTCCATCCGGAAAGCGGCAACTTTCGGGCCGCTGCGCTAAACGAAGTTGCC 3995 |||||| | || | ||||||||| || |||| | ||||||||||||| ||| || | Sbjct 170731 TTTTCTCCTCTACGGGCGGAAAGCGCCACTTTTCCGCCCGCTGCGCTAAATGAAAATGGC 170672 Query 3996 ACATTCCGGCTACGTCGGGTAGAAAAATAGTGTACATACCTCGGCCAGAAAAAAGTAAAG 4055 | ||||| || ||||| | ||||||||| | | ||| ||| ||| ||| | |||| Sbjct 170671 GCTTTCCGCCTCCGTCGAAGACAAAAATAGTATTCTCACCACGGGCAGGAAATAAGAAAG 170612 Query 4056 CCTCAGACCACATGTTTGTTT 4076 ||||||| ||||||||||||| Sbjct 170611 CCTCAGATCACATGTTTGTTT 170591 >seq8582 Length=49863 Score = 98.7 bits (108), Expect = 3e-17 Identities = 91/113 (81%), Gaps = 2/113 (2%) Strand=Plus/Minus Query 3962 CAACTTTCGGGCCGCTGCGCTAAACGAAGTTGCCACATTCCGGCTACGTCGGGTAGAAAA 4021 ||||||| ||||||||||||||||| ||||||| |||||||| ||| || |||||| Sbjct 23679 CAACTTTTCTTCCGCTGCGCTAAACGAAATTGCCACTTTCCGGCTCCGT-GGACAGAAAA 23621 Query 4022 ATAGTGTACATACCTCGGCCAG-AAAAAAGTAAAGCCTCAGACCACATGTTTG 4073 |||| |||| || |||| ||| |||||| |||||||| | || ||||||| Sbjct 23620 ATAGGATACACACTTCGGGCAGTAAAAAAAGGAAGCCTCAAATCATATGTTTG 23568 >seq5081 Length=85839 Score = 98.7 bits (108), Expect = 3e-17 Identities = 90/112 (80%), Gaps = 5/112 (4%) Strand=Plus/Plus Query 3964 ACTTTCGGGCCGCTGCGCTAAACGAAGTTGCCACATTCCGGCTACGTCGGGTAGAAAAAT 4023 |||||| | | ||||||||| |||||||||||||||||||||| ||||| |||||||| Sbjct 8555 ACTTTCTGACAGCTGCGCTATACGAAGTTGCCACATTCCGGCTTCGTCGAACAGAAAAAT 8614 Query 4024 AGTGTACATACCTCGGCC-AGAAAAAAGTAAAGCCTCAGACCACATGTTTGT 4074 || || | | |||| | |||||| ||| ||||||| ||||||||||| Sbjct 8615 AG----CACGCTTTGGCCAATAAAAAAAGAAATCCTCAGATCACATGTTTGT 8662 >seq194 Length=1111927 Score = 98.7 bits (108), Expect = 3e-17 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 3938 TTCTGCCCTCCATCCGGAAAGCGGCAACTTTCGGGCCGCTGCGCTAAACGAAGTTGCCAC 3997 ||||| |||| | ||||| | ||||||| |||||||||||||| || |||| || Sbjct 159949 TTCTGACCTCTGGGCAGAAAGTGATAACTTTCCTTCCGCTGCGCTAAACTAAATTGCAAC 160008 Query 3998 ATTCCGGCTACGTCGGGTAGAAAAATAGTGTACATACCTCGGCCAGAAAAAAGTAAAGCC 4057 |||| ||| | ||||| |||||||| | || ||||||| ||| ||||| ||||| Sbjct 160009 TTTCCAGCTCCATCGGGCAGAAAAATGACATGCACACCTCGGGCAGTAAAAAAGAAAGCG 160068 Query 4058 TCAGACCACATGTTTGT 4074 ||||| |||||||||| Sbjct 160069 TCAGATTACATGTTTGT 160085 >seq4485 Length=254116 Score = 96.9 bits (106), Expect = 1e-16 Identities = 104/136 (76%), Gaps = 4/136 (3%) Strand=Plus/Plus Query 3936 TTTTCTGCCCTCCATCCGGAAAGCGGCAACTTTCGGGCCGCTGCGCTAAACGAAGTTGCC 3995 |||||| |||||| ||||||| | |||||||| || |||| || ||||||||||| Sbjct 191033 TTTTCTACCCTCCGGGCGGAAAGTGACAACTTTCTTCCCTCTGC--TACACGAAGTTGCC 191090 Query 3996 ACATTCCGGCTACGTCGGGTAGAAAAATAGTGTACATACCTCGGCCAGAAAAAAGTAAAG 4055 || || ||| ||||||| |||||||||| |||| | ||| | ||| | ||| |||| Sbjct 191091 ACTTTTTAGCTTCGTCGGGCAGAAAAATAGCATACAGATCTCAGGCAGTACAAA--AAAG 191148 Query 4056 CCTCAGACCACATGTT 4071 | |||| |||||||| Sbjct 191149 CGTCAGGTCACATGTT 191164 >seq390 Length=76551 Score = 96.9 bits (106), Expect = 1e-16 Identities = 96/123 (78%), Gaps = 5/123 (4%) Strand=Plus/Minus Query 3953 GGAAAGCGGCAACTTTCGGGCCGCTGCGCTAAACGAAGTTGCCACATTCCGGCTACGTCG 4012 |||||| ||||||||| | | ||||||||||||||||||| ||| | || | |||| Sbjct 31993 GGAAAGTGGCAACTTTTGTCCTGCTGCGCTAAACGAAGTTGTCACTTCACGACCCGGTCG 31934 Query 4013 GGTAGAAAAATAGTGTACATACCTCGGCCAGAAAAAAGTAAAGCCTCAGACCACATGTTT 4072 | ||||||||| ||| ||||||| ||| ||||| ||| ||| |||| |||||||| Sbjct 31933 AGCAGAAAAATA---TAC--ACCTCGGGCAGTAAAAAAGAAAACCTTAGACAACATGTTT 31879 Query 4073 GTT 4075 ||| Sbjct 31878 GTT 31876 >seq3452 Length=264397 Score = 95.1 bits (104), Expect = 4e-16 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 3955 AAAGCGGCAACTTTCGGGCCGCTGCGCTAAACGAAGTTGCCACATTCCGGCTACGTCGGG 4014 |||| | |||||| || ||||||||||||||| || | || ||||| || |||||| Sbjct 88220 AAAGTAGTAACTTTACTGCAGCTGCGCTAAACGAAATTACTACTTTCCGACTCCGTCGGC 88161 Query 4015 TAGAAAAATAGTGTACATACCTCGGCCAGAAAAAAGTAAAGCCTCAG 4061 ||||||| ||| |||| | ||||||||| ||||| |||||||||| Sbjct 88160 CAGAAAAACAGTTTACACAGCTCGGCCAGTAAAAAAGAAAGCCTCAG 88114 >seq506 Length=1027603 Score = 87.8 bits (96), Expect = 6e-14 Identities = 103/137 (75%), Gaps = 3/137 (2%) Strand=Plus/Minus Query 3936 TTTTCTGCCCTCCATCCGGAAAGCGGCAACTTTCGGGCCGCTGCGCTAAACGAAGTTGCC 3995 ||||||||||||| || |||| | | ||||| |||||||| ||| ||||| | || Sbjct 490555 TTTTCTGCCCTCCGGGCGAAAAG-GACGTCTTTCCTTCCGCTGCGTTAATCGAAGCTACC 490497 Query 3996 ACATTCCGGCTACGTCGGGTAGAAAAATAGTGTACATACCTCGGCCAGAAAAAAGTAAAG 4055 || ||| | || ||||| | |||| || || | ||||||||| || |||| |||| Sbjct 490496 ACTTTCTGACTCCGTCGAGCAGAACAA--GTAAATATACCTCGGGCATTGAAAAAGAAAG 490439 Query 4056 CCTCAGACCACATGTTT 4072 ||||||| ||||||||| Sbjct 490438 CCTCAGATCACATGTTT 490422 >seq4930 Length=140671 Score = 86.0 bits (94), Expect = 2e-13 Identities = 103/138 (75%), Gaps = 4/138 (3%) Strand=Plus/Plus Query 3936 TTTTCTGCCCTCCATCCGGAAAGCGGCAACTTTCGGGCCGCTGCGCTAAACGAAGTTGCC 3995 |||| |||||| | || ||||| || ||||| | |||||| |||||||||||||||| Sbjct 108356 TTTTGTGCCCTACGGCCCGAAAGTAGCCACTTTGTGACCGCTGTGCTAAACGAAGTTGCC 108415 Query 3996 ACATTCCGGCTACGTCGGGTAGAAA--AATAGTGTACATACCTCGGCCAGAAAAAAGTAA 4053 || || | ||| || | | ||||| |||| ||||| || | ||| |||| ||| Sbjct 108416 ACTTTTCAGCTTTGTTGAGCAGAAAATAATATATTACATGTCTAGAGCAGTAAAA--TAA 108473 Query 4054 AGCCTCAGACCACATGTT 4071 || |||||| |||||||| Sbjct 108474 AGTCTCAGATCACATGTT 108491 >seq3090 Length=186805 Score = 84.2 bits (92), Expect = 8e-13 Identities = 82/104 (79%), Gaps = 4/104 (4%) Strand=Plus/Plus Query 3973 CCGCTGCGCTAAACGAAGTTGCCACATTCCGGCTACGTCGGGTAGAAAAATAGTGTACAT 4032 || ||||| |||||||||||||| ||| | || |||||||||||| |||||||| || Sbjct 30609 CCTCTGCGTCAAACGAAGTTGCCAACTTCTGACTCCGTCGGGTAGAAGAATAGTGTGCAA 30668 Query 4033 ACCTCGGCCAGAAAAAAGTAAA--GCCTCAGACCACATGTTTGT 4074 ||||||| || || ||||| || ||||| || |||||||| Sbjct 30669 ACCTCGGGTAG--TAAGGTAAACGGCATCAGATCATATGTTTGT 30710 >seq1558 Length=206530 Score = 84.2 bits (92), Expect = 8e-13 Identities = 96/125 (77%), Gaps = 3/125 (2%) Strand=Plus/Plus Query 3952 CGGAAAGCGGCAACTTTCGGGCCGCTGCGCTAAACGAAGTTGCCACATTCCGGCTACGTC 4011 ||||||| ||||||| || ||| ||| |||||| ||||||| |||| ||| ||| Sbjct 155243 CGGAAAGTAACAACTTTTCTTCCACTGTGCTGAACGAAATTGCCAC-TTCCAGCTCAGTC 155301 Query 4012 GGGTAGAAAAATAGTGTACATAC-CTCGGCCAGAAAAAAGTAAAGCCTCAGACCACATGT 4070 ||||||||||||| | |||| || | || ||| | | || |||| |||||| | ||||| Sbjct 155302 GGGTAGAAAAATAATATACACACACCCGTGCAGTATATAG-AAAGACTCAGATCTCATGT 155360 Query 4071 TTGTT 4075 ||||| Sbjct 155361 TTGTT 155365 >seq149 Length=1066780 Score = 84.2 bits (92), Expect = 8e-13 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 3936 TTTTCTGCCCTCCATCCGGAAAGCGGCAACTTTCGGGCCGCTGCGCTAAACGAAGTTGCC 3995 |||||| | || | | ||||| | |||||||| | ||||| |||||||||||| Sbjct 562344 TTTTCTCCTCTTCGGACAGAAAGTGACAACTTTCCTCCTATTGCGCCGAACGAAGTTGCC 562285 Query 3996 ACATTCCGGCTACGTCGGGTAGAAAAATAGTGTACATACCTCGGCCAGAAAAAA 4049 || ||||||||| |||||| |||||||||| |||| || | |||| | ||||| Sbjct 562284 ACTTTCCGGCTAAGTCGGGCAGAAAAATAGCATACACACGTTGGCCGGTAAAAA 562231 >seq1670 Length=275292 Score = 82.4 bits (90), Expect = 3e-12 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 3955 AAAGCGGCAACTTTCGGGCCGCTGCGCTAAACGAAGTTGCCACATTCCGGCTACGTCGGG 4014 |||| | |||||||| | ||| | ||||||||||||| |||| ||| || |||| | Sbjct 5551 AAAGTGACAACTTTCTGCCCGGTTCGCTAAACGAAGTCTCCACTTTCATGCACCGTCTGA 5492 Query 4015 TAGAAAAATAGTGTACATACCTCGGCCAGAAAAAAGTAAAGCCTCAGACCACATGTTTGT 4074 |||||||||| ||||| ||| | | ||||| |||| ||| | | ||||||||||| Sbjct 5491 CAGAAAAATAGCGTACACGCCTAGAGTATTAAAAAATAAAACCTTATATCACATGTTTGT 5432 >seq1616 Length=832846 Score = 82.4 bits (90), Expect = 3e-12 Identities = 82/105 (78%), Gaps = 1/105 (1%) Strand=Plus/Plus Query 3972 GCCGCTGCGCTAAACGAAGTTGCCACATTCCGGCTACGTCGGGTAGAAAAATAGTGTACA 4031 |||||||| ||| ||| ||| | |||||||| ||||||| ||| |||||||||||| Sbjct 259181 GCCGCTGCATGAAATGAAACTGCTAATTTCCGGCTCCGTCGGGCAGAGAAATAGTGTACA 259240 Query 4032 TACCTCGGCCAG-AAAAAAGTAAAGCCTCAGACCACATGTTTGTT 4075 ||||||| ||| || || ||| ||| ||| ||||||| |||| Sbjct 259241 AACCTCGGACAGTAACAACAGAAAACCTTAGATCACATGTGTGTT 259285 >seq4035 Length=4080 Score = 80.6 bits (88), Expect = 9e-12 Identities = 91/121 (75%), Gaps = 2/121 (2%) Strand=Plus/Plus Query 3949 ATCCGGAAAGCGGCAACTTTCGGGCCGCTGCGCTAAACGAAGTTGCCACATTCCGGCTAC 4008 || ||||||| || |||||| |||||||||| |||||||||||||| ||| |||| Sbjct 2399 ATGCGGAAAGTAGCGACTTTCCTCCCGCTGCGCTTAACGAAGTTGCCACTTTCAGGCTTT 2458 Query 4009 GTCGGGTAGAAAAATAGTGTACATACCTCGGCCAGAAAAAAGTAAAGCCTCAGACCACAT 4068 || | | |||||||||| | | ||||| ||| | || |||| |||||| ||||| Sbjct 2459 GTTGAGCAGAAAAATAGCATGCTCACCTC--ACAGCACGAAAGAAAGTCTCAGATCACAT 2516 Query 4069 G 4069 | Sbjct 2517 G 2517 >seq1700 Length=247439 Score = 80.6 bits (88), Expect = 9e-12 Identities = 93/123 (76%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 3954 GAAAGCGGCAACTTTCGGGCCGCTGCGCTAAA-CGAAGTTGCCACATTCCGGCTACGTCG 4012 ||||| |||||||||| |||||||| |||| |||||||||||| |||||| | ||| Sbjct 231974 GAAAGTGGCAACTTTCTAACCGCTGCGTTAAAACGAAGTTGCCACTTTCCGGTTTGATCG 231915 Query 4013 GGTAGAAAAATAGTGTACATACCTCGGCCAGAAAAAAGTAAAGCCTCAGACCACATGTTT 4072 | |||||| | |||| | || || ||| | | || ||||| ||||| || || ||| Sbjct 231914 AGCGTAAAAATCATATACAGAACTTGGTCAGTATATAG-AAAGCTTCAGAACATATTTTT 231856 Query 4073 GTT 4075 ||| Sbjct 231855 GTT 231853 >seq882 Length=798820 Score = 80.6 bits (88), Expect = 9e-12 Identities = 106/145 (73%), Gaps = 8/145 (6%) Strand=Plus/Minus Query 3936 TTTTCTGCCCTCCATCCGGAAAGCGGCAACTTTCGGGCCGCTGCGCTAAACGAAGTTGCC 3995 ||||||| |||| ||||||| |||||||| |||| | |||||||||||||| Sbjct 197715 TTTTCTGATCTCCGGACGGAAAGTAACAACTTTCCTCTCGCTTCCCTAAACGAAGTTGCA 197656 Query 3996 ACATTCCGGCTACGTCGGGTAGAAAAATAGTGTACA------TACCTCGGCCAGAAAAAA 4049 || |||||||| | ||||| || || ||||| |||| ||||| | ||| ||||| Sbjct 197655 ACTTTCCGGCTCCATCGGGCAG-AACATAGTATACACACCTTTACCTTTGGCAGTAAAAA 197597 Query 4050 GTAAAGCCTCAGACCACATGTTTGT 4074 | || ||||||| | | |||||| Sbjct 197596 -TGAATCCTCAGATCTTAGGTTTGT 197573 >seq821 Length=281534 Score = 80.6 bits (88), Expect = 9e-12 Identities = 86/114 (75%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 3954 GAAAGCGGCAACTTTCGGGCCGCTGCGCTAAACGAAGTTGCCACATTCCGGCTACGTCGG 4013 ||| | | ||||||| ||| ||||||||| |||||||||| || | ||| | | || Sbjct 76548 GAAGGTGACAACTTTTCTCCCGTTGCGCTAAATTAAGTTGCCACTTTTCCGCTCCATTGG 76607 Query 4014 GTAGAAAAATAGTGTACATACCTCGGCCAGAAAAAAGTAAAGCCTCAGACCACA 4067 | || |||||||| ||| |||| || | ||||| |||||||||||| |||| Sbjct 76608 GCAGCAAAATAGTATACCAACCTTGGGCTATAAAAAATAAAGCCTCAGATCACA 76661 >seq4350 Length=392101 Score = 78.8 bits (86), Expect = 3e-11 Identities = 60/71 (85%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 3936 TTTTCTGCCCTCCATCCGGAAAGCGGCAACTTTCGGGCCGCTGCGCTAAACGAAGTTGCC 3995 |||||| || || ||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 166274 TTTTCTATTCTAAATGCGGAAAGTGGCAACTTTCGTCCCGCTGCGCTAAACGAAGTTGCC 166333 Query 3996 ACATTCCGGCT 4006 || ||| |||| Sbjct 166334 ACTTTCAGGCT 166344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 17576237955325