Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20nemesis_20[genbank_20GCA_5F002245505.1_202017-08-10] 40,359 sequences; 808,524,533 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq3626 132 1e-25 seq4182 131 4e-25 seq2492 131 4e-25 >seq3626 Length=201135 Score = 132 bits (146), Expect = 1e-25 Identities = 168/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | ||||| || |||| ||| |||||||| || || ||||| | Sbjct 59747 CCACCTCGCAGACGCAGTACAAGGTGAAGAGTGGACTCTTTTTGAATGTTGTAGTCAGAC 59688 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG- 288365 || || || || ||||| ||||||||||| || ||||| || |||||||| ||||| Sbjct 59687 AGGGTTCGCCCATCTTCCAATTGTTTTCCAGCAAAGATGAGTCGCTGTTGG---TCTGGA 59631 Query 288366 --GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||| ||||| || ||||||||||| ||||| || || || || | || | ||| Sbjct 59630 GGGATGCCTTCCTTGTCCTGGATTTTGGCTTTGACATTCTCAATTGTGTCTGAAGGTTCA 59571 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| | || || ||||| || || |||||||| || || |||||||| Sbjct 59570 ACTTCCAAAGTAATGGTCTTTCCAGTAAGAGTCTTAACAAAGATCTGCAT 59521 Score = 127 bits (140), Expect = 5e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || || || |||| ||| |||||||| || || ||||| | Sbjct 59519 CCACCTCGCAGACGGAGAACAAGGTGAAGAGTGGACTCTTTTTGAATGTTGTAGTCAGAA 59460 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || ||||||||||| | |||||||| || || || || || || || ||| Sbjct 59459 AGGGTACGTCCGTCTTCCAGCTGTTTTCCAGCAAAAATGAGCCGTTGCTGGTCCGGAGGG 59400 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || |||||||| || ||||||||||| || |||||||| |||| ||| | |||||| Sbjct 59399 ATGCCTTCTTTGTCTTGGATTTTCGCCTTTACGTTTTCGATAGTATCTGATGGCTCTACT 59340 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || | || |||||||| || || ||||| || || || || |||||| Sbjct 59339 TCTAAGGTAATCGTCTTACCTGTGAGAGTTTTAACAAAAATTTGCATT 59292 Score = 127 bits (140), Expect = 5e-24 Identities = 167/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || || || |||| ||| |||||||| || || ||||| | Sbjct 59975 CCACCTCGCAGACGGAGAACAAGGTGAAGAGTGGACTCTTTTTGAATGTTGTAGTCAGAC 59916 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG- 288365 || || || || ||||| | ||||||||| || ||||| || |||||||| ||||| Sbjct 59915 AGGGTTCGCCCATCTTCCAGTTGTTTTCCAGCAAAGATGAGTCGCTGTTGG---TCTGGA 59859 Query 288366 --GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||| ||||| || ||||||||||| ||||| || || || || | || | ||| Sbjct 59858 GGGATGCCTTCCTTGTCCTGGATTTTAGCTTTGACATTCTCAATTGTGTCTGAAGGTTCA 59799 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| | || || ||||| || || ||||||||||| || |||||||| Sbjct 59798 ACTTCCAAAGTAATAGTCTTTCCAGTAAGAGTCTTGACAAAGATCTGCAT 59749 Score = 123 bits (136), Expect = 6e-23 Identities = 166/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | | ||| | || | ||| ||| ||||| || |||||||| | Sbjct 60203 CCACCTCGGAGACGTAATACCAAGTGCAAAGTGGATTCCTTTTGAATGTTATAGTCAGAA 60144 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG- 288365 || || || || ||||| | ||| ||||| || ||||| || |||||||| ||||| Sbjct 60143 AGGGTTCGCCCATCTTCCAGTTGCTTTCCAGCAAAGATAAGTCGCTGTTGG---TCTGGA 60087 Query 288366 --GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||| ||||| || ||||||||||| ||||| || || || || | || | ||| Sbjct 60086 GGGATGCCTTCCTTGTCCTGGATTTTGGCTTTGACATTCTCAATTGTGTCTGAAGGTTCA 60027 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| | || || ||||| || || ||||||||||| || |||||||| Sbjct 60026 ACTTCTAATGTAATGGTCTTTCCAGTAAGAGTCTTGACAAAGATCTGCAT 59977 Score = 122 bits (134), Expect = 2e-22 Identities = 152/207 (73%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 288271 TGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGT 288330 |||| ||| ||| ||||| || || || || | ||| ||||| || ||||| | ||| Sbjct 59267 TGAAGCGTAGATTCCTTTTGAATGTTGTAATCAGAGAGTGTGCGCCCATCTTCAAGCTGT 59208 Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390 || ||||||||||| || ||||| ||| ||||| |||||||| ||||| ||||| Sbjct 59207 TTCCCTGCGAAGATAAGTCGCTGCTGATCGGGAGGGATACCTTCTTTGTCCTGAATTTTA 59148 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGAT---TCTACTTCGAGCGTGATCGTCTTCCCG 288447 ||||| || ||||| || | ||| |||| || || || | || || || || || Sbjct 59147 GCTTTTACATTTTCAATTGTATC---CGATGGCTCAACCTCCAAGGTTATGGTTTTTCCA 59091 Query 288448 GTCAGAGTCTTGACGAATATCTGCATT 288474 || || ||||| ||||||||||||||| Sbjct 59090 GTGAGTGTCTTCACGAATATCTGCATT 59064 >seq4182 Length=188933 Score = 131 bits (144), Expect = 4e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 288265 ACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCT 288324 || ||||| | ||| || || || ||||| ||||||| | ||||| || ||||| Sbjct 74290 ACAAGATGTAACGTAGACTCCTTCTGAATATTGTAGTCGGATAATGTGCGGCCATCTTCC 74349 Query 288325 AATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGG 288384 | ||||| || || ||||||| ||| || ||| ||| || ||||||||||| || Sbjct 74350 AGCTGTTTACCAGCAAAGATCAAACGTTGCTGATCCGGTGGAATACCTTCTTTATCTTGA 74409 Query 288385 ATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTC 288444 ||||| ||||| || ||||| |||| |||| | || || ||||| ||||| || ||| Sbjct 74410 ATTTTGGCTTTTACATTTTCAATAGTATCGGAAGCCTCCACCTCGAGGGTGATGGTTTTC 74469 Query 288445 CCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || || || || ||||||||||||||| Sbjct 74470 CCCGTAAGGGTTTTTACGAATATCTGCATT 74499 >seq2492 Length=83244 Score = 131 bits (144), Expect = 4e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | | ||| ||||| | ||| | ||| ||||||||||||||| ||||| | | Sbjct 40546 CCACCTCTCAATCTCAGTACCAAATGGAGTGTGGATTCTTTTTGGATATTGTAGTCCGAG 40605 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || ||||| | || || || || ||||| || | ||| || |||| Sbjct 40606 AGTGTGCGGCCATCTTCAAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCTGGTGGG 40665 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || ||||| || |||||||| || || || ||||| |||| || | || ||| Sbjct 40666 ATACCCTCTTTGTCTTGGATTTTGGCCTTAACATTTTCAATAGTGTCTGAAGGCTCAACT 40725 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| || || || |||| ||||||||||| |||||||| Sbjct 40726 TCAAGAGTGATGGTTTTGCCAGTCAAGGTCTTGACGAAAATCTGCAT 40772 Score = 131 bits (144), Expect = 4e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | | ||| ||||| | ||| | ||| ||||||||||||||| ||||| | | Sbjct 41002 CCACCTCTCAATCTCAGTACCAAATGGAGTGTGGATTCTTTTTGGATATTGTAGTCTGAG 41061 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || ||||| | || || || || ||||| || | ||| || |||| Sbjct 41062 AGTGTGCGACCATCTTCAAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCTGGTGGG 41121 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || ||||| || |||||||| || || || ||||| |||| || | || ||| Sbjct 41122 ATACCCTCTTTGTCTTGGATTTTGGCCTTAACATTTTCAATAGTGTCTGATGGCTCAACT 41181 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| || || || |||| ||||||||||| |||||||| Sbjct 41182 TCAAGAGTGATGGTTTTGCCAGTCAAGGTCTTGACGAAAATCTGCAT 41228 Score = 127 bits (140), Expect = 5e-24 Identities = 167/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | | ||| ||||| | ||| | ||| ||||||||||||||| ||||| | | Sbjct 40774 CCACCTCTCAATCTCAGTACCAAATGGAGTGTGGATTCTTTTTGGATATTGTAGTCCGAG 40833 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || ||||| | || ||||| || ||||| || | ||| || |||| Sbjct 40834 AGTGTGCGACCATCTTCAAGCTGCTTTCCGGCAAAGATGAGCCTCTGCTGGTCTGGTGGG 40893 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT---TCT 288423 || || ||||| || |||||||| || || || ||||| |||| || |||| || Sbjct 40894 ATACCCTCTTTGTCTTGGATTTTGGCCTTAACATTTTCAATAGTGTC---CGATGGCTCA 40950 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || ||||| || || || || | ||||| ||||| |||||||| Sbjct 40951 ACTTCAAGTGTGATGGTTTTGCCAGTTAAGGTCTTTACGAAAATCTGCAT 41000 Score = 125 bits (138), Expect = 2e-23 Identities = 167/231 (72%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| | | ||| ||||| | ||| | ||| ||||||||||||||| ||||| | Sbjct 41685 TCCACCTCTCAATCTCAGTACCAAATGGAGTGTGGATTCTTTTTGGATATTGTAGTCAGA 41744 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT-- 288363 ||| ||||| || ||||| | || || || || ||||| || | ||| || ||| Sbjct 41745 GAGTGTGCGACCATCTTCAAGCTGCTTACCAGCAAAGATAAGCCTCTGCTG---GTCTGG 41801 Query 288364 -GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 ||||| || ||||| || |||||||| || || || ||||| |||| || | ||| Sbjct 41802 CGGGATACCCTCTTTGTCTTGGATTTTAGCCTTTACATTTTCAATAGTGTCTGAAGGTTC 41861 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||| || || || || || || ||||| || ||||| || || |||||||| Sbjct 41862 TACCTCTAGGGTAATAGTTTTGCCGGTGAGGGTCTTTACAAAAATCTGCAT 41912 Score = 118 bits (130), Expect = 2e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | | ||| ||||| | ||| | ||| |||||| |||||||| ||||| | | Sbjct 41458 CCACCTCTCAATCTCAGTACCAAATGGAGTGTGGATTCTTTCTGGATATTGTAGTCCGAG 41517 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || ||||| | || || || || ||||| || | ||| || |||| Sbjct 41518 AGTGTGCGGCCATCTTCAAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCTGGTGGG 41577 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || ||||| || || ||||| ||||| || ||||| || | || | || ||| Sbjct 41578 ATACCCTCTTTGTCTTGAATTTTGGCTTTAACATTTTCAATGGTGTCTGATGGCTCAACT 41637 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || ||||| || || || || | ||||||||||| ||||||||| Sbjct 41638 TCAAGTGTGATGGTTTTGCCAGTTAAGGTCTTGACGAAAATCTGCATT 41685 Score = 116 bits (128), Expect = 9e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | | ||| ||||| | ||| | ||| ||||||||||||||| ||||| | Sbjct 40090 CCACCCCTCAATCTCAGTACTAAATGGAGAGTGGATTCTTTTTGGATATTGTAGTCCGAT 40149 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || ||||| | || || || || ||||| || | ||| || |||| Sbjct 40150 AGTGTGCGGCCATCTTCAAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCTGGTGGG 40209 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || ||||| || |||||||| || || || |||||||| | || | || ||| Sbjct 40210 ATACCCTCTTTGTCTTGGATTTTAGCCTTAACATTTTCTATGGTGTCTGATGGCTCAACT 40269 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| || || || || | ||||||||||| || ||||| Sbjct 40270 TCAAGTGTGATGGTTTTGCCAGTTAAGGTCTTGACGAAAATTTGCAT 40316 Score = 114 bits (126), Expect = 3e-20 Identities = 164/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | | ||| ||||| | ||| | ||| ||||||||||||||| ||||| | | Sbjct 41230 CCACCTCTCAATCTCAGTACCAAATGGAGTGTGGATTCTTTTTGGATATTGTAGTCAGAG 41289 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || ||||| | || || || || ||||| || | ||| || |||| Sbjct 41290 AGTGTACGACCATCTTCAAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCTGGTGGG 41349 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT---TCT 288423 || || ||||| || || ||||| || || || ||||| |||| || |||| || Sbjct 41350 ATACCCTCTTTGTCTTGAATTTTGGCCTTAACATTTTCAATAGTGTC---CGATGGCTCA 41406 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || || || || || || |||| |||||||| || |||||||| Sbjct 41407 ACTTCAAGAGTAATGGTTTTGCCAGTCAAGGTCTTGACAAAAATCTGCAT 41456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179044401078402