Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20nemesis_20[genbank_20GCA_5F002245505.1_202017-08-10] 40,359 sequences; 808,524,533 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq4146 275 4e-69 seq3626 104 2e-17 >seq4146 Length=100757 Score = 275 bits (304), Expect = 4e-69 Identities = 801/1218 (66%), Gaps = 43/1218 (4%) Strand=Plus/Plus Query 5820 CCCAA-ACCGGTGTTCATTGCATTTAAAAGATCACCGTTGTCCGCGTCTATTTCCCACGC 5878 ||||| ||| | ||||| ||||| || | || || | || || |||||||||||||| Sbjct 15435 CCCAAGACCCATATTCATAGCATTCAATAAGTCCCCAGTATCTGCATCTATTTCCCACGC 15494 Query 5879 AAATAAACCACCCAAATTTTTGCTCACTACATACTTACCTTTTGCTACCACCGATTGATC 5938 ||| |||||||| | || || | |||||||| ||||| ||| || ||| Sbjct 15495 AAACAAACCACCGAGCTTATTATTTCTAACATACTTTCCTTTCTCTATAACGGATCTTGG 15554 Query 5939 GTTGTCGTACGTAACTAAATCATTATTATC------GTAGACGTACGGAGATTGTGCAAT 5992 |||||||| |||| || || | | | ||||||| || | |||||| | Sbjct 15555 ATTGTCGTATGTAATTAGGTCCCCTGTGGCAGGACGGAAGACGTATGGCGCTTGTGCCAC 15614 Query 5993 GTTATCATAGAATTGTACAC---TTTC---GTCGTACCT--ATTTACAATATCTTTATAA 6044 |||||||| || | || | |||| | | | | |||| |||| ||| | || Sbjct 15615 ATTATCATA--ATGGAACTCCCATTTCCCTGCTGCAATTTCATTTGCAATCTCTCTGTAG 15672 Query 6045 TCGATTACGCCGCTTTCCCATGTACCTTTAACGGGAGCGCTAGCTATTCCTGTAAACGGA 6104 |||| || || | ||| || |||||| ||| | | |||| ||| || || ||| Sbjct 15673 TCGACCACACCATCCTGCCAGGTCCCTTTACAAGGACCTGTGGCTACTCCAGTGAAAGGA 15732 Query 6105 TTATTGTTTTCGACTCGATGCACACCGCTCCAGCCGCGTCCATACATAGCCACACCTACT 6164 ||||| | | | || || || |||| || || |||||||| || ||||| ||| Sbjct 15733 TTATTATCTGTGTAGTTTTGGACTCCAGTCCAACCACGACCATACATCGCTACACCAACT 15792 Query 6165 ACTAAT-TTAGTCGAATCGACATTTTGATTTAACAATCTGTTAATAGCAAAATGGGTTGT 6223 | |||| || | | | ||| ||| ||| | | |||| |||| | ||||| Sbjct 15793 A-TAATCTTCTTAGGGTTGACTCCTTGGGCTAAGAGGTTTTTAACTCCAAAGTCAGTTGT 15851 Query 6224 GTAATTTTCGTTAACGTCCCACGAAGGAGCGTAAAGCGGTGTTTGAAAACCCAAATTTTC 6283 ||| |||| || | ||| | ||| ||||| | |||||||||| || | | | || Sbjct 15852 GTAGGTTTCCTTTGGATTCCATGCAGGTGCGTACAACGGTGTTTGATGTCCAAGAGTGTC 15911 Query 6284 CATGGACCAAGCGCCTTTAAAATCGTAGGTCATTACAAATATATAATCGAGATAGCGTTG 6343 | ||||| || |||||||| ||||| |||||| || |||| ||| | ||| | || Sbjct 15912 ATTTGACCACGCTCCTTTAAAGTCGTAACTCATTAAGAAGATATGATCCATATATTGCTG 15971 Query 6344 CGCGTCTGTATAATCGACAACGTCGATTTTGTCGTAACCGGCACCGATAGCGCTAGTTAG 6403 || | | || || || || | |||||| || |||| |||| |||||| || || Sbjct 15972 AGCTTTCCTGTAGTCAACTACTTGGATTTTATCCCAACCAGCACTAATAGCGGATGTCAG 16031 Query 6404 TTGCAATCGTTTACCTCTCtttttttCCAATTTGTTGAGCATTTCGCGTAACTCCTTTAA 6463 || || ||||| ||| | || | ||| |||||||| |||||||| || | Sbjct 16032 TTCATATTTCTTACCAGTCTCTGCGGATAACTCGTTCAGCATTTCACGTAACTCTTTCAT 16091 Query 6464 AAGTATTGTA--TATGTTTTGCGATCCACTGAAGCGTTGCCCAGCGACG----GGTTGGC 6517 ||| || | || || | || || | ||| ||| | | || || Sbjct 16092 AAGC--TGGACGTAAACTTCACCGTCATTTG-------GTCCACCGAGGTTAGGATTAGC 16142 Query 6518 ACCTTTACCGCCCGGAAACTCCCAATCTATGTCGACGCCGTCGAAAAATTTCCACGTTTC 6577 |||||| || || || ||||||||||| ||||| || || ||||| |||||||| |||| Sbjct 16143 ACCTTTTCCACCAGGGAACTCCCAATCAATGTCAACACCATCGAAGAATTTCCAAGTTTG 16202 Query 6578 CAAAAATTCGCGCACACTATCAACAAACGTATTTCGTTTTTCGACGTCGTTTAACTGGTA 6637 | || || ||| | ||||| || || |||| | || | || ||| Sbjct 16203 GAGGAAGTCTTTCACTGATGCCACAAAACGATCTCTTTTTACCTTATCATCAAAAAAGTA 16262 Query 6638 AAACGGATCGCTAAGCGTCCATCCGCCTATCGATGGCAATATTGTTAAATCTGGATTGTG 6697 || ||||| || ||||| || || || ||||| | | | ||||| || | | Sbjct 16263 GAATGGATCTGCCAGTGTCCAGCCTCCGATTGATGGAAGAACCTTCAAATCAGG--TCTA 16320 Query 6698 GC--GCTTGATCGCCATTAACTGTCCAAAGTTTCCTTTGTACGGTTCGTTGTAGGCCTCG 6755 || | || | | ||| | ||||||||||| |||||||| |||||||| ||| Sbjct 16321 GCTTGTTTCAAAGACATCAGTTGTCCAAAGTTGCCTTTGTAAGGTTCGTTCCAGGAGGAC 16380 Query 6756 ACACCTTTTTGTGGTTTTTGAAGCGCTCCCCATATATCATGAATGGTTACTTTGAAATCT 6815 | ||| || ||||||||||| | ||| |||| ||||| || | |||||||| || Sbjct 16381 AAACCCTTCTGTGGTTTTTGTAAAGCTGCCCAAGGGTCATGGATAGAAACTTTGAAGTCC 16440 Query 6816 TTTCGGCCGGCGCACGATTTTTGCAACGCCTC-AAACGAACTGGGTATTTGTTGTTTAAG 6874 | ||| ||| ||| ||| ||||||| || | |||| || | |||| || |||| Sbjct 16441 TCTCGCCCGCTGCAAGATCTTTGCAAAGCTTGGAAACTTCCTTCG-ATTTCTT--TTAAA 16497 Query 6875 CGCATCGTTTACACCATCGCCGCCACAAATTGGTATAAACCCGTACAACAAATGTGTAAG 6934 | ||||| | || || |||||||| || || ||||| ||||| | | ||||||||| Sbjct 16498 CTG-TCGTTAATTCCGTCACCGCCACAGATGGGGATAAATCCGTAAAGAAGATGTGTAAG 16556 Query 6935 ATTAGGAATGGGAATTTTGTCGGCGGGATATTGTCTATCGTAAACACCCCATTCCACAAA 6994 ||| |||||||| | || || | || ||| |||| |||||||||||| |||||||| Sbjct 16557 ATTTGGAATGGGTACCTTATCTACTGGGAATTTTCTAGGGTAAACACCCCACTCCACAAA 16616 Query 6995 GTAAGCGCCCACAACATT 7012 ||||| || || || || Sbjct 16617 ATAAGCTCCGACGACTTT 16634 >seq3626 Length=201135 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || ||||||| ||||||||| | || | |||| |||||||| || || || || | | Sbjct 59747 CCACCTCGCAGACGCAGTACAAGGTGAAGAGTGGACTCTTTTTGAATGTTGTAGTCAGAC 59688 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | || |||| ||||||||||| || |||| || | ||||| || || | || Sbjct 59687 AGGGTTCGCCCATCTTCCAATTGTTTTCCAGCAAAGATGAGTCGCTGTTGGTCTGGAGGG 59628 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | |||||| ||||| ||||| ||| | || | | |||||||| ||| || Sbjct 59627 ATGCCTTCCTTGTCCTGGATTTTGGCTTTGACATTCTCAATTGTGTCTGAAGGTTCAACT 59568 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||||||||| || || || || | ||| || || ||||||||||| Sbjct 59567 TCCAAAGTAATGGTCTTTCCAGTAAGAGTCTTAACAAAGATCTGCAT 59521 Score = 95.1 bits (104), Expect = 8e-15 Identities = 162/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 39489 ATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATC 39548 || ||| ||||| | ||| | |||||| ||||||||| ||| ||||| || ||||| || Sbjct 60207 ATTGCCACCTCGGAGACGTAATACCAAGTGCAAAGTGGATTCCTTTTGAATGTTATAGTC 60148 Query 39549 GGCCAAAACG--CGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCC 39606 | ||| | || |||| |||| ||| || || |||| || | ||||| || || Sbjct 60147 AG--AAAGGGTTCGCCCATCTTCCAGTTGCTTTCCAGCAAAGATAAGTCGCTGTTGGTCT 60090 Query 39607 GAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTT 39666 | || | |||||| ||||| ||||| ||| | || | | |||||||| | Sbjct 60089 GGAGGGATGCCTTCCTTGTCCTGGATTTTGGCTTTGACATTCTCAATTGTGTCTGAAGGT 60030 Query 39667 TCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || || || ||||| || || || || | ||| || || ||||||||||| Sbjct 60029 TCAACTTCTAATGTAATGGTCTTTCCAGTAAGAGTCTTGACAAAGATCTGCAT 59977 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || ||||||| ||| || || | || | |||| |||||||| || || || || | | Sbjct 59975 CCACCTCGCAGACGGAGAACAAGGTGAAGAGTGGACTCTTTTTGAATGTTGTAGTCAGAC 59916 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | || |||| |||| |||||| || |||| || | ||||| || || | || Sbjct 59915 AGGGTTCGCCCATCTTCCAGTTGTTTTCCAGCAAAGATGAGTCGCTGTTGGTCTGGAGGG 59856 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | |||||| ||||| ||||| ||| | || | | |||||||| ||| || Sbjct 59855 ATGCCTTCCTTGTCCTGGATTTTAGCTTTGACATTCTCAATTGTGTCTGAAGGTTCAACT 59796 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||||||||| || || || || | ||| || || ||||||||||| Sbjct 59795 TCCAAAGTAATAGTCTTTCCAGTAAGAGTCTTGACAAAGATCTGCAT 59749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347198737469447