Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20nemesis_20[genbank_20GCA_5F002245505.1_202017-08-10] 40,359 sequences; 808,524,533 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq2492 136 4e-27 seq409 123 2e-23 seq4182 120 3e-22 seq3626 113 5e-20 >seq2492 Length=83244 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || ||||| || || | || |||||||||||||| | || || ||| | | Sbjct 41685 AATGCAGATTTTCGTCAAGACCTTAACTGGCAAAACCATCACACTTGAAGTTGAGCCATC 41626 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | ||| |||||| ||||| | ||||||||||| || || | ||||| Sbjct 41625 AGACACCATTGAAAATGTTAAAGCCAAAATTCAAGACAAAGAGGGTATCCCACCAGACCA 41566 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| ||||||| | || ||||| ||||| || || | ||||| ||| |||||||| Sbjct 41565 GCAGAGGCTCATCTTTGCCGGCAAGCAGCTTGAAGATGGCCGCACACTCTCGGACTACAA 41506 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| || ||| | || || |||||||| ||| | |||||||| || Sbjct 41505 TATCCAGAAAGAATCCACACTCCATTTGGTACTGAGATTGAGAGGTGG 41458 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || |||||||| || | || |||||||||||||| | || || ||| | | Sbjct 40544 ATGCAGATTTTCGTAAAGACCTTGACTGGCAAAACCATCACTCTTGAAGTTGAGCCATCA 40485 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | ||| |||| | ||||||| ||||||||||| || || | ||||| Sbjct 40484 GACACTATTGAAAATGTTAAGGCCAAAATCCAAGACAAAGAGGGTATCCCACCAGACCAG 40425 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| ||||||| | || ||||| ||||| || || | ||||| ||| |||||||| Sbjct 40424 CAGAGGCTCATCTTTGCCGGCAAGCAGCTTGAAGATGGTCGCACACTCTCGGACTACAAT 40365 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| || ||| | || || |||||||| ||| | |||||||| || Sbjct 40364 ATCCAGAAAGAATCCACACTCCATTTGGTACTGAGATTGAGAGGTGG 40318 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || |||||||||||||| | || || ||| | | Sbjct 40772 ATGCAGATTTTCGTCAAGACCTTGACTGGCAAAACCATCACTCTTGAAGTTGAGCCTTCA 40713 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | ||| |||| | ||||||| ||||||||||| || || | ||||| Sbjct 40712 GACACTATTGAAAATGTTAAGGCCAAAATCCAAGACAAAGAGGGTATCCCACCAGACCAG 40653 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| ||||||| | || ||||| ||||| || || | ||||| ||| |||||||| Sbjct 40652 CAGAGGCTCATCTTTGCCGGCAAGCAGCTTGAAGATGGCCGCACACTCTCGGACTACAAT 40593 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||| ||| | || || |||||||| ||| | |||||||| || Sbjct 40592 ATCCAAAAAGAATCCACACTCCATTTGGTACTGAGATTGAGAGGTGG 40546 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || |||||||| || | || |||||||||||||| | || || ||| | | Sbjct 41000 ATGCAGATTTTCGTAAAGACCTTAACTGGCAAAACCATCACACTTGAAGTTGAGCCATCG 40941 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | ||| |||| | ||||||| ||||||||||| || || | ||||| Sbjct 40940 GACACTATTGAAAATGTTAAGGCCAAAATCCAAGACAAAGAGGGTATCCCACCAGACCAG 40881 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| ||||||| | || || || ||||| || || | ||||| ||| |||||||| Sbjct 40880 CAGAGGCTCATCTTTGCCGGAAAGCAGCTTGAAGATGGTCGCACACTCTCGGACTACAAT 40821 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||| ||| | || || |||||||| ||| | |||||||| || Sbjct 40820 ATCCAAAAAGAATCCACACTCCATTTGGTACTGAGATTGAGAGGTGG 40774 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || |||||||||||||| | || || ||| | | Sbjct 41228 ATGCAGATTTTCGTCAAGACCTTGACTGGCAAAACCATCACTCTTGAAGTTGAGCCATCA 41169 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | ||| |||| | ||||||| ||||||||||| || || | ||||| Sbjct 41168 GACACTATTGAAAATGTTAAGGCCAAAATCCAAGACAAAGAGGGTATCCCACCAGACCAG 41109 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| ||||||| | || ||||| ||||| || || | ||||| ||| |||||||| Sbjct 41108 CAGAGGCTCATCTTTGCCGGCAAGCAGCTTGAAGATGGTCGCACACTCTCAGACTACAAT 41049 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||| ||| | || || |||||||| ||| | |||||||| || Sbjct 41048 ATCCAAAAAGAATCCACACTCCATTTGGTACTGAGATTGAGAGGTGG 41002 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || | || |||||||||||||| | || || ||| | | Sbjct 40316 ATGCAAATTTTCGTCAAGACCTTAACTGGCAAAACCATCACACTTGAAGTTGAGCCATCA 40257 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | ||| |||| | ||||||| ||||||||||| || || | ||||| Sbjct 40256 GACACCATAGAAAATGTTAAGGCTAAAATCCAAGACAAAGAGGGTATCCCACCAGACCAG 40197 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| ||||||| | || ||||| ||||| || || | ||||| || |||||||| Sbjct 40196 CAGAGGCTCATCTTTGCCGGCAAGCAGCTTGAAGATGGCCGCACACTATCGGACTACAAT 40137 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||| ||| | || || ||||| || ||| | ||||| || ||| Sbjct 40136 ATCCAAAAAGAATCCACTCTCCATTTAGTACTGAGATTGAGGGGTGGC 40089 Score = 125 bits (138), Expect = 7e-24 Identities = 168/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || || ||||| || ||||| |||||||| || ||| | || || || | Sbjct 41915 AACATGCAGATTTTTGTAAAGACCCTCACCGGCAAAACTATTACCCTAGAGGTAGAACCT 41856 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GA 38359 | |||| | ||| | || | ||||||| ||||||||||| | ||||||| || Sbjct 41855 TCAGACACTATTGAAAATGTAAAGGCTAAAATCCAAGACAAAGAGGGTA-TCCCGCCAGA 41797 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||| |||| || | || || || ||||| || || | ||||| ||| ||||| Sbjct 41796 CCAGCAGAGGCTTATCTTTGCTGGTAAGCAGCTTGAAGATGGTCGCACACTCTCTGACTA 41737 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||| |||||||| ||| | || || |||||||| ||| | |||||||| || Sbjct 41736 CAATATCCAAAAAGAATCCACACTCCATTTGGTACTGAGATTGAGAGGTGG 41686 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || | || ||||||||||| || | || || ||| | | Sbjct 41456 ATGCAGATTTTTGTCAAGACCTTGACTGGCAAAACCATTACTCTTGAAGTTGAGCCATCG 41397 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | ||| |||| | ||||| | ||||||||||| || || | ||||| Sbjct 41396 GACACTATTGAAAATGTTAAGGCCAAAATTCAAGACAAAGAGGGTATCCCACCAGACCAG 41337 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| ||||||| | || ||||| ||||| || || | || || ||| |||||||| Sbjct 41336 CAGAGGCTCATCTTTGCCGGCAAGCAGCTTGAAGATGGTCGTACACTCTCTGACTACAAT 41277 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||| ||| | || || |||||||| ||| | |||||||| || Sbjct 41276 ATCCAAAAAGAATCCACACTCCATTTGGTACTGAGATTGAGAGGTGG 41230 >seq409 Length=488447 Score = 123 bits (136), Expect = 2e-23 Identities = 161/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 |||| || || || || || || || |||||||||||||| |||||||| || || || | Sbjct 75177 CCTCATCTCTTGATATAAGCTCATTACTGAAAGTCAAGCCAGGCATGAGTCCACGCTTCT 75236 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 | | |||||| || | || |||||||| || || || | ||||| || || || || | Sbjct 75237 TTAACCAAAAGATAGAAGCAAAACTGCCTGAGAAAAAAATACCCTCTACAGCTGCAAATG 75296 Query 133037 CCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGG 133096 | | | || || || |||||||| |||||| || ||||| | || ||||| || | Sbjct 75297 CTATAATACGTTCTCCAAACGTGGCAGTTTTGCTTGCAATCCATTGTAGTGCCCAGTCCG 75356 Query 133097 CCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAA 133139 |||| | ||| || || |||| ||||| || || || || || Sbjct 75357 CCTTCTTTTTAACACAAGGCAAAGTTTCTATAGCATTAAATAA 75399 >seq4182 Length=188933 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 || |||||| |||||||||||||| || ||||| |||||||||||| |||| || ||||| Sbjct 74502 AACAATGCAGATATTCGTAAAAACCCTTACGGGGAAAACCATCACCCTCGAGGTGGAGGC 74443 Query 38300 CACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 |||| | | ||| | |||| ||||| | || ||||| || ||||| | || Sbjct 74442 TTCCGATACTATTGAAAATGTAAAAGCCAAAATTCAAGATAAAGAAGGTATTCCACCGGA 74383 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 || || || | || | || || ||||||||||| || | ||||| | |||||| Sbjct 74382 TCAGCAACGTTTGATCTTTGCTGGTAAACAGCTGGAAGATGGCCGCACATTATCCGACTA 74323 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||| || || ||||| | ||| | ||| | ||| || | || ||||| || Sbjct 74322 CAATATTCAGAAGGAGTCTACGTTACATCTTGTGTTGAGGTTAAGAGGAGG 74272 >seq3626 Length=201135 Score = 113 bits (124), Expect = 5e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| || || ||||| ||||| || || || || ||| | || || ||| | | Sbjct 59292 AATGCAAATTTTTGTTAAAACTCTCACAGGTAAGACGATTACCTTAGAAGTAGAGCCATC 59351 Query 38303 CGACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 || | | | ||||| | || | ||||||| |||||||| || || || | |||| Sbjct 59352 AGATACTATCGAAAACG-TAAAGGCGAAAATCCAAGACAAAGAAGGCATCCCTCCGGACC 59410 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | || |||||||||| || || ||||||||||| |||| || ||||| ||||||| Sbjct 59411 AGCAACGGCTCATTTTTGCTGGAAAACAGCTGGAAGACGGACGTACCCTTTCTGACTACA 59470 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||| ||||| || | || || || | || || ||| || |||| || Sbjct 59471 ACATTCAAAAAGAGTCCACTCTTCACCTTGTTCTCCGTCTGCGAGGTGG 59519 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || || || ||||| || | || || || | | Sbjct 59521 ATGCAGATCTTTGTTAAGACTCTTACTGGAAAGACCATTACTTTGGAAGTTGAACCTTCA 59580 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | |||| ||||||| ||||| || || || || | |||||| Sbjct 59581 GACACAATTGAGAATGTCAAAGCCAAAATCCAGGACAAGGAAGGCATCCCTCCAGACCAA 59640 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| ||||| | || || ||||| |||| || | ||| ||||| ||||||||| Sbjct 59641 CAGCGACTCATCTTTGCTGGAAAACAATTGGAAGATGGGCGAACCCTGTCTGACTACAAC 59700 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || ||||| || | || || || | || |||||| || |||| || Sbjct 59701 ATTCAAAAAGAGTCCACTCTTCACCTTGTACTGCGTCTGCGAGGTGG 59747 Score = 84.2 bits (92), Expect = 2e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 38322 AAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCG 38381 |||| ||||||| ||||| || || || || | ||||||||||| ||||| | || Sbjct 59827 AAAGCTAAAATCCAGGACAAGGAAGGCATCCCTCCAGACCAACAGCGACTCATCTTTGCT 59886 Query 38382 GGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACG 38441 || ||||| ||||| || | ||| ||||| ||||||||||| ||||| || | || Sbjct 59887 GGAAAACAACTGGAAGATGGGCGAACCCTGTCTGACTACAACATTCAAAAAGAGTCCACT 59946 Query 38442 CTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || || | || || ||| || |||| || Sbjct 59947 CTTCACCTTGTTCTCCGTCTGCGAGGTGG 59975 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || || || ||||| || | || || || | | Sbjct 59977 ATGCAGATCTTTGTCAAGACTCTTACTGGAAAGACCATTACATTAGAAGTTGAACCTTCA 60036 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | |||| ||||||| ||||| || || || || | |||||| Sbjct 60037 GACACAATTGAGAATGTCAAAGCCAAAATCCAGGACAAGGAAGGCATCCCTCCAGACCAA 60096 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | || || || || ||||| || | ||| ||||| ||||| ||| Sbjct 60097 CAGCGACTTATCTTTGCTGGAAAGCAACTGGAAGATGGGCGAACCCTTTCTGACTATAAC 60156 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 || ||||||||| | || |||| ||||| | ||| | |||| ||| Sbjct 60157 ATTCAAAAGGAATCCACTTTGCACTTGGTATTACGTCTCCGAGGTGGC 60204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499920469074560