Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20nemesis_20[genbank_20GCA_5F002245505.1_202017-08-10] 40,359 sequences; 808,524,533 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq4146 176 3e-39 seq3626 125 5e-24 seq2492 95.1 8e-15 seq4182 86.0 4e-12 >seq4146 Length=100757 Score = 176 bits (194), Expect = 3e-39 Identities = 582/896 (65%), Gaps = 27/896 (3%) Strand=Plus/Plus Query 5657 TGCACTCCGGACCACCCACGACCGTACATGGCTACACCCACAATTAGCTTCTTCGATTCG 5716 || ||||| | ||| |||||||| ||||| |||||||| || || | |||||| | | | Sbjct 15751 TGGACTCCAGTCCAACCACGACCATACATCGCTACACCAACTATAATCTTCTTAGGGTTG 15810 Query 5717 ACGCTCTGATTTAACAGACGCTTGATTGAAAAATCTGTCGTGTATGTCTCGCCTGGGTTC 5776 || | || ||| || || | | ||| || || ||||| || || ||| ||| Sbjct 15811 ACTCCTTGGGCTAAGAGGTTTTTAACTCCAAAGTCAGTTGTGTAGGTTTCCTTTGGATTC 15870 Query 5777 CACGATGGAGCGTACAGAGGTGTCTGGTGTCCCAGA---TCCGTTAACGACCAGGCACCC 5833 || | || ||||||| ||||| || ||||| ||| || || ||||| || || Sbjct 15871 CATGCAGGTGCGTACAACGGTGTTTGATGTCCAAGAGTGTCATTT---GACCACGCTCCT 15927 Query 5834 TTGTAGTCGTACGTCATAACAAAGATGTGATCAAGATACCTTTGTGCGCTGGC--GTAGT 5891 || ||||||| |||| | ||||| ||||| | ||| || || ||| | ||||| Sbjct 15928 TTAAAGTCGTAACTCATTAAGAAGATATGATCCATATA--TTGCTGAGCTTTCCTGTAGT 15985 Query 5892 CGACAACGTCGATCTTGTCATGTCCCGCGCCGATAGCACTTGTCAATTGTAACCGTTTAC 5951 | || || | ||| || || || || | ||||| ||||| || | |||| Sbjct 15986 CAACTACTTGGATTTTATCCCAACCAGCACTAATAGCGGATGTCAGTTCATATTTCTTAC 16045 Query 5952 CCCGCTTCTCGCCCAACTCGTCAAGCATCACGCGAAGTTCCCGCAACAAAAGAGTGTACG 6011 | || || ||||||| ||||| | || | || || ||| || ||| Sbjct 16046 CAGTCTCTGCGGATAACTCGTTCAGCATTTCACGTAACTCTTTCAT---AAGC-TGGACG 16101 Query 6012 TATTGCGGTCCACCTCGGCATT------ACCCAACACAGGATTAGCACCCTTTCCACCCG 6065 || | |||| | |||| ||| | |||||||||||| |||||||| | Sbjct 16102 TAAAC---TTCACC--GTCATTTGGTCCACCGAGGTTAGGATTAGCACCTTTTCCACCAG 16156 Query 6066 GAAACTCCCAGTCAATGTCCACTCCGTCAAAGAACTTCCATGTCTCCAGAAACTCGCGGA 6125 | |||||||| |||||||| || || || ||||| ||||| || | || || || | Sbjct 16157 GGAACTCCCAATCAATGTCAACACCATCGAAGAATTTCCAAGTTTGGAGGAAGTCTTTCA 16216 Query 6126 CACTTGTGACGAACACCTTACGTTTGGAGTCATCGTTCATAAAATAAAACGGATCGCTCA 6185 | || || || | | ||| | ||| | | ||| || || ||||| || Sbjct 16217 CTGATGCCACAAAACGATCTCTTTTTACCTTATCATCAAAAAAGTAGAATGGATCTGCCA 16276 Query 6186 ACGTCCACCCCCCTATGGATGGTAGGACTGTCAACGAAGGGTTGTGACGTTTGATGGCCA 6245 ||||| || || || ||||| || || |||| ||| | |||| | | || Sbjct 16277 GTGTCCAGCCTCCGATTGATGGAAGAACCTTCAAATCAGGTCTAGCTTGTTTCAAAGACA 16336 Query 6246 TCAGCTGGCCAAAGTTACCCTTGTACGCTTCGTTGTACGCCTCAACGCCTTTCTGTGGTT 6305 |||| || |||||||| || ||||| | |||||| | | | || |||||||||| Sbjct 16337 TCAGTTGTCCAAAGTTGCCTTTGTAAGGTTCGTTCCAGGAGGACAAACCCTTCTGTGGTT 16396 Query 6306 TTTGCAACGCGGCCCAGATGTCGTGAATACTCACCTTGAAGTCATCGCGACCAGCGCAGG 6365 |||| || || ||||| ||| || ||| || |||||||| || || || ||| | Sbjct 16397 TTTGTAAAGCTGCCCAAGGGTCATGGATAGAAACTTTGAAGTCCTCTCGCCCGCTGCAAG 16456 Query 6366 ATTTCTGTAGCGCCTC-AAAGGAATTGGGAATCTGCTTGAGGGCGTCGTTTATGCCGTTA 6424 || | || | || | ||| | || | | || | |||||| || |||| | Sbjct 16457 ATCTTTGCAAAGCTTGGAAACTTCCTTCGATT-TCTTTTAAACTGTCGTTAATTCCGTCA 16515 Query 6425 CCACCACAAATTGGAATGAACCCGTACAGCAGGTGCGTCAGATTAGGTATTGGTACCTTG 6484 || ||||| || || || || ||||| || || || || ||||| || || |||||||| Sbjct 16516 CCGCCACAGATGGGGATAAATCCGTAAAGAAGATGTGTAAGATTTGGAATGGGTACCTTA 16575 Query 6485 TCAATGGGAAACTGTCTGCCATACACTCCCCACTCCACGAAATACGCACCGACGAC 6540 || | || || | ||| || || ||||||||||| ||||| || |||||||| Sbjct 16576 TCTACTGGGAATTTTCTAGGGTAAACACCCCACTCCACAAAATAAGCTCCGACGAC 16631 >seq3626 Length=201135 Score = 125 bits (138), Expect = 5e-24 Identities = 158/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 34770 AAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCA 34829 || |||||||| | ||| ||| || |||||||||||||| |||||| |||| |||| Sbjct 60188 AATACCAAGTGCAAAGTGGATTCCTTTTGAATGTTATAGTCAGAAAGGGTTCGCCCATCT 60129 Query 34830 TCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34889 ||||| || ||||| ||||| || ||||| || |||||| | || | || |||||||| Sbjct 60128 TCCAGTTGCTTTCCAGCAAAGATAAGTCGCTGTTGGTCTGGAGGGATGCCTTCCTTGTCC 60069 Query 34890 CTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGG 34947 || || |||||| || || || | || | ||||| || | || |||| Sbjct 60068 TGGATTTTGGCTTTGAC--ATTCTCAATTGTGTCTGAAGGTTCAACTTCTAATGTAATGG 60011 Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 | ||||| || |||||||| ||||||||||||||| Sbjct 60010 TCTTTCCAGTAAGAGTCTTGACAAAGATCTGCATA 59976 Score = 113 bits (124), Expect = 3e-20 Identities = 154/213 (72%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||| | ||||| ||| ||||| |||||||| ||||| || ||| |||| |||| || Sbjct 59958 AACAAGGTGAAGAGTGGACTCTTTTTGAATGTTGTAGTCAGACAGGGTTCGCCCATCTTC 59899 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 ||| |||||||| ||||| || ||||| || |||||| | || | || |||||||| Sbjct 59898 CAGTTGTTTTCCAGCAAAGATGAGTCGCTGTTGGTCTGGAGGGATGCCTTCCTTGTCCTG 59839 Query 34892 AATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTT 34949 || || |||||| || || || | || | ||||| || | || || || Sbjct 59838 GATTTTAGCTTTGAC--ATTCTCAATTGTGTCTGAAGGTTCAACTTCCAAAGTAATAGTC 59781 Query 34950 TTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||||| || |||||||| ||||||||||||||| Sbjct 59780 TTTCCAGTAAGAGTCTTGACAAAGATCTGCATA 59748 Score = 111 bits (122), Expect = 1e-19 Identities = 150/207 (72%), Gaps = 4/207 (2%) Strand=Plus/Minus Query 34778 GTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTG 34837 ||||| ||| ||||| |||||||| ||||| || ||| |||| |||| |||| || Sbjct 59724 GTGAAGAGTGGACTCTTTTTGAATGTTGTAGTCAGACAGGGTTCGCCCATCTTCCAATTG 59665 Query 34838 TTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTT 34897 |||||| ||||| || ||||| || |||||| | || | || |||||||| || || Sbjct 59664 TTTTCCAGCAAAGATGAGTCGCTGTTGGTCTGGAGGGATGCCTTCCTTGTCCTGGATTTT 59605 Query 34898 CTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCC 34955 |||||| || || || | || | ||||| || | || ||||| ||||| Sbjct 59604 GGCTTTGAC--ATTCTCAATTGTGTCTGAAGGTTCAACTTCCAAAGTAATGGTCTTTCCA 59547 Query 34956 GTGAGAGTCTTCACAAAGATCTGCATA 34982 || |||||||| ||||||||||||||| Sbjct 59546 GTAAGAGTCTTAACAAAGATCTGCATA 59520 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 34770 AAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCA 34829 || |||||||||| || ||| || |||||||| || || || || | || |||| Sbjct 59276 AATACCAAGTGAAGCGTAGATTCCTTTTGAATGTTGTAATCAGAGAGTGTGCGCCCATCT 59217 Query 34830 TCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34889 || |||||||| || || || || ||||| ||||| || | || | || || ||||| Sbjct 59216 TCAAGCTGTTTCCCTGCGAAGATAAGTCGCTGCTGATCGGGAGGGATACCTTCTTTGTCC 59157 Query 34890 CTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTT 34949 ||| || ||| || | | || | || | |||||| || | |||||||||| Sbjct 59156 TGAATTTTAGCTTTTACATTTTCAATTGTATCCGATGGCTCAACCTCCAAGGTTATGGTT 59097 Query 34950 TTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 ||||| ||||| |||||||| || |||||||| || Sbjct 59096 TTTCCAGTGAGTGTCTTCACGAATATCTGCATTTT 59062 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||| | ||||| ||| ||||| |||||||| ||||| |||||| | ||| | || || Sbjct 59502 AACAAGGTGAAGAGTGGACTCTTTTTGAATGTTGTAGTCAGAAAGGGTACGTCCGTCTTC 59443 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 |||||||||||| ||||| || || ||||||||||| | || | || || ||||| Sbjct 59442 CAGCTGTTTTCCAGCAAAAATGAGCCGTTGCTGGTCCGGAGGGATGCCTTCTTTGTCTTG 59383 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 || ||| || ||| | | || | || | ||| || || | ||| || || || Sbjct 59382 GATTTTCGCCTTTACGTTTTCGATAGTATCTGATGGCTCTACTTCTAAGGTAATCGTCTT 59323 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || |||||||| || ||||| || ||||| Sbjct 59322 ACCTGTGAGAGTTTTAACAAAAATTTGCAT 59293 >seq2492 Length=83244 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || || ||||| |||| ||||| || | |||| |||||| || || || |||||||| Sbjct 40774 CCACCTCTCAATCTCAGTACCAAATGGAGTGTGGATTCTTTTTGGATATTGTAGTCCGAG 40833 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | || |||| || ||||| ||||||||||| || || | ||||||||| | || Sbjct 40834 AGTGTGCGACCATCTTCAAGCTGCTTTCCGGCAAAGATGAGCCTCTGCTGGTCTGGTGGG 40893 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | ||||| ||||| || || || || | | || | || | |||||| Sbjct 40894 ATACCCTCTTTGTCTTGGATTTTGGCCTTAACATTTTCAATAGTGTCCGATGGCTCAACT 40953 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || | || |||||||| || || | ||||| || || |||||||| Sbjct 40954 TCAAGTGTGATGGTTTTGCCAGTTAAGGTCTTTACGAAAATCTGCAT 41000 >seq4182 Length=188933 Score = 86.0 bits (94), Expect = 4e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 34752 TTTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCC 34811 || ||||| || |||||||| || | || | || || |||||||| || ||||| Sbjct 74269 TTACCTCCTCTTAACCTCAACACAAGATGTAACGTAGACTCCTTCTGAATATTGTAGTCG 74328 Query 34812 GAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGC 34871 || | | || |||| ||||||||||| || ||||| || | |||||||| || | Sbjct 74329 GATAATGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAGATCAAACGTTGCTGATCCGGT 74388 Query 34872 GGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCA 34931 || | || || || || ||| || ||| || | | || | || ||||| Sbjct 74389 GGAATACCTTCTTTATCTTGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGCCTCC 74448 Query 34932 ACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || |||| ||| |||||||| ||||| || || || || || |||||||| Sbjct 74449 ACCTCGAGGGTGATGGTTTTCCCCGTAAGGGTTTTTACGAATATCTGCAT 74498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324473920746552