Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20nemesis_20[genbank_20GCA_5F002245505.1_202017-08-10] 40,359 sequences; 808,524,533 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq4459 623 1e-173 seq409 134 2e-26 >seq4459 Length=154925 Score = 623 bits (690), Expect = 1e-173 Identities = 1210/1791 (68%), Gaps = 26/1791 (1%) Strand=Plus/Minus Query 46967 TTTGTCTTTTTCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATA 47026 |||| ||| || || ||||| | |||| ||| || | |||||| ||||||||||| Sbjct 144016 TTTGGATTTATCTACTGTAAATTGGATTGCATTTGCTGCAGGTTTTGTACGTAAATAATA 143957 Query 47027 CATACCAGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATA 47086 ||| || || |||||||| | |||| |||| ||||| || || | |||| ||| Sbjct 143956 CATGCCTGTTTTTAAACCCATTTTCCAAGCATAAAAATGTATGGACGTCAGTTTACCATA 143897 Query 47087 ACTAGGTTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATC 47146 | | ||||| | | ||||||||||| ||| ||||| || || ||||||||||||||||| Sbjct 143896 ATTTGGTTCAGCTACATGAATATTAAAAGACTGACTTTGGTCTATAAATGCACCTCTATC 143837 Query 47147 AGCTGCCATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTT 47206 ||| ||||| | | | || | | || ||||||||||| ||||| | | | | Sbjct 143836 AGCAGCCATCTGAATAGTAGTTTTCACAGAAATTTCCCATACTGTCTTATACAAATCTCT 143777 Query 47207 AATGTCTTCTGGGA---GATT-AGTATTTTGAATAGATCCTCCgttttctataattttgt 47262 || |||| ||||| | || | |||| |||| || || || | | ||| | Sbjct 143776 GATATCTT-TGGGAATAGTTTCAATATTCTGAACTGAACCATTATTATGAAGAATAAGAT 143718 Query 47263 tttttaattcatttgaccaaagttttcgttcagttaatgtttttaaAAGATGAGGATTAA 47322 |||| | |||| ||| | | | || ||| || | ||||||||||| |||||| Sbjct 143717 TTTTCATGTCATCGTCCCATAAATCTGCTTGAGTCAAATCTCTTAAAAGATGATGATTAA 143658 Query 47323 CAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTA 47382 | | ||||||||| || |||| ||||| | |||||||| || ||||||| | Sbjct 143657 CGACTTGAAATTCGCCTGATAATACTCGTCTTTGGTATATATTTGAAGTGAATGGTTCAA 143598 Query 47383 TAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATA 47442 ||||||||||| |||| || ||||| || ||||| || ||||| | || | || | Sbjct 143597 AGGATTCATTATTGCCAAGTATCTGAGCCGTAGATGCCGTTGGCATAGGCGCCAGTAGCA 143538 Query 47443 AGCTATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAAGAT 47502 ||| | | ||||| ||| ||| | ||||||||| |||| Sbjct 143537 GAGAATTACGAATTCCATGTTTAGCTATTTTTTCTTTAAGAGCAACCCAATCCCAGAGAT 143478 Query 47503 CTGATGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAACCAT 47562 | | ||| |||||| | |||| |||| | ||| |||| || | ||| ||| | Sbjct 143477 CAGTGGGAGTCTTATTCCACATATCAAATTGCAAAATCCCTTGGCTAACAGGACTACCTT 143418 Query 47563 TATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAATGCACTAT 47622 ||||| ||||| || | | | || | |||||| || |||||||| || | | Sbjct 143417 CATATGAACTATAAACTCCCTCTTTCTCTGCTAATTCACAGCTAGCTTCCAAAGCTCCGT 143358 Query 47623 AATATATTGTTTCAAATATTTTTATGTTTAGATTCCTTGCTTCTGATGATTCAAAAGGAT 47682 |||| || || |||||||| | | ||||| | ||||| | |||| |||| | Sbjct 143357 AATAGATAGTCTCAAATATCTGTTGGTTTAACAACAATGCTTTTTCACTTTCATAAGGGT 143298 Query 47683 ANNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCTATGAG 47742 | || | ||| || || ||||| || |||||||| ||||||||||| Sbjct 143297 AGCGCATCAGCACAAAGGCATCAGCTAAACCTTGGACTCCAATACCTATTGGTCTATGTC 143238 Query 47743 TTTTATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTTTATTTA 47802 |||| || | ||||||||| | |||||| | || | ||||||||||||||| | Sbjct 143237 GCATATTGGAGTTTTTAGCTTCTGGAACTGGATAATAATTGACATCTATAATTTTATTAA 143178 Query 47803 GANNNNNNNNNNNNNNNNNNACAATTTCTCTTAATTTATTAAAATCAAACTTGTTAT--T 47860 | || |||| |||| || ||||| | | ||| | Sbjct 143177 GGTTTTGTGTTATGATTTTTGTAACTTCTTTTAACTTTCCAAAATTGTATGTTCTATCAT 143118 Query 47861 TATA-ACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTG--G 47917 || |||||| |||| | || ||||| |||| ||||||||| ||||| |||| | | Sbjct 143117 CATTTACAAACATATTCAAAGCAATAGAAGCTAAATTACATACTGCTACTTCATCTACTG 143058 Query 47918 ATTAGTATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTG 47977 || ||||||| || |||||| | ||||||||||| |||||| || || || | ||||| Sbjct 143057 AT--GTATATTCTACTATTTCTGTACATAGATTACTACATTTAATTGTTCCTAGATTTTT 143000 Query 47978 ATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTAT 48037 |||||| | ||||||||| || ||||| | ||| || || || || ||||| | Sbjct 142999 CTGATTACTCTTTCTGTTACATGAATCTTTGTATAACATGAATGGAGTGCCTGTTTCAAC 142940 Query 48038 CTGAGATTCAATGATAGATTTCCAAACA------GTCCTAGCCTTTATAACAGCTCTAGC 48091 || | ||| | |||| ||||| | | | ||| | | | | ||| ||| Sbjct 142939 TTGTGCTTCTACAATAGCCTTCCATAAAACTTGTGCCCTTACTTGTTTGACAAATCTTTT 142880 Query 48092 TTTATTATCATGTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTAT- 48150 || ||| |||| | ||| || | | |||| ||| || || || | ||| | | Sbjct 142879 TTCATTCTCATACT----TTTCATACAGAGCTTC--AAACTCTTCTCCCCA-ACAATCTG 142827 Query 48151 CTAACCCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAG 48210 | || |||||||| |||| ||||||||||| ||||| |||| |||| ||||| Sbjct 142826 CCAAACCAGGACAGTCATGGGGACACATCAAACTCCAATTTTCATTTTTTTCAACTCTTT 142767 Query 48211 TCATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCAT 48270 ||||||| | |||||||||||| | ||| ||| || ||||||| || | |||||| | Sbjct 142766 TCATAAACAAATCTGGTATCCATAAAGCATAAAACAATTCCCTAGCTCGAACTTCTTCTT 142707 Query 48271 TGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAAT 48330 ||||| ||||| |||| || || | ||| || | | ||| | ||||||||||||||||| Sbjct 142706 TGCCAGTATTCTTTTTCAGATCTAAAAACTCAAACACATCTGAATGCCATGGTTCTAAAT 142647 Query 48331 ATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGT 48390 ||| || | | | ||||| || || ||||| |||||||||| ||||||||| || ||| Sbjct 142646 ATACAGCAAATGCCCCTGGACGCTTGTTACCACCTTGATCTACATATCTGGCTGTGCTGT 142587 Query 48391 TATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAAC 48450 |||| ||||||||||||||||||| |||||||||| |||||| || || | ||| | Sbjct 142586 TATATACTCTTAACATTGGGACAAGTCCATTTGATACACCATTTGTGCCAGCTATACATG 142527 Query 48451 TTCCACTAGCTCTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTA 48510 | || ||||||| ||| || || || || |||||||| ||||||||| | Sbjct 142526 TACCTTTAGCTCTGATACAGTGAACATGAAGCCCAATGCCACCTGCAGATTTAGATATCA 142467 Query 48511 GAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATA 48570 ||||| |||| || || ||||| ||||| || ||||| |||||| |||| |||| Sbjct 142466 AGGCACATTGTTTCAGAGTGTCATATATTCCCTCAATACTGTCATCTTTCATGGCCAATA 142407 Query 48571 GAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCAT 48630 |||||| |||| ||| || ||| | | | |||||| || ||| || | Sbjct 142406 AGAAACAAGATGACAATTGAGGTCTTGGAGTAGCAGCAGAAAATAAAGTAGGACTGGCGT 142347 Query 48631 GAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATT 48690 || | || | ||||| || || || ||||| || | |||| | ||||| || || | Sbjct 142346 GAGTGAAATACTTCTCAGACAATAAGTTATAGGTGTTAATAGCTGAATCAATGTCTTCTC 142287 Query 48691 GATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAA 48741 |||||| || |||| ||||||||||| ||||| ||| ||||| ||| ||| Sbjct 142286 CATGTATTCCAATAGCTACACGCATTAGCATATGTTGTGGTCTCTCAGCAA 142236 >seq409 Length=488447 Score = 134 bits (148), Expect = 2e-26 Identities = 163/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| ||||| ||| | |||||| || || || |||||||| ||||| | || | Sbjct 75177 CCTCATCTCTTGATATAAGCTCATTACTGAAAGTCAAGCCAGGCATGAGTCCACGCTTCT 75236 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 ||||||| || ||||||||||| || || || || ||||| ||||| |||||||| | Sbjct 75237 TTAACCAAAAGATAGAAGCAAAACTGCCTGAGAAAAAAATACCCTCTACAGCTGCAAATG 75296 Query 19103 CAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAG 19162 | | | | ||||||| | | ||| || | |||||||| |||||||| || | Sbjct 75297 CTATAATACGTTCTCCAAACGTGGCAGTTTTGCTTGCAATCCATTGTAGTGCCCAGTCCG 75356 Query 19163 CCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATA 19204 |||||||||| ||||| |||| || ||||||| |||||||| Sbjct 75357 CCTTCTTTTTAACACAAGGCAAAGTTTCTATAGCATTAAATA 75398 Score = 113 bits (124), Expect = 5e-20 Identities = 88/104 (85%), Gaps = 1/104 (1%) Strand=Plus/Plus Query 19445 TATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACA 19504 || |||| |||||||| ||||||||||| |||||||| ||||| || |||||||| |||| Sbjct 76501 TACCTTT-GATAAATCCACTTCTTCAACAGTCCAAAAGGAAGCTTCGGCTTTTTTGTACA 76559 Query 19505 TGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCTA 19548 | | ||| ||||| |||| || ||||| ||||||||||||||| Sbjct 76560 TTTCCCAAATATCTGGATACTGGATAGGGAATATAACAAATCTA 76603 Score = 100 bits (110), Expect = 3e-16 Identities = 132/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 19234 TATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAAT 19293 |||| || || |||| | ||||||||| || |||| |||||| ||||| || || || Sbjct 76213 TATGTGTCAATTAATAGAGAGTACATTTCAGAGTGAACATTTTCCATAGCTATTTGGAAC 76272 Query 19294 CCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTT 19353 || || || |||| || || || | || || || |||| | || || | |||| Sbjct 76273 CCATAGAAGAATCTGGCCTCAGTAACTTGAACCTCTTGTGAAAACCGCTCCACTAGATTT 76332 Query 19354 TCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTT 19413 ||||| || ||||||||| || ||||||||||||| || ||||| || |||||| | Sbjct 76333 TCATTGACAATTCCATCAGATGCGGCAAAAAATGCTAGAACGTGTTTTATGAAATGTCTC 76392 Query 19414 TCA 19416 ||| Sbjct 76393 TCA 76395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561825223136760