Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20nemesis_20[genbank_20GCA_5F002245505.1_202017-08-10] 40,359 sequences; 808,524,533 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq4182 131 2e-25 seq409 120 4e-22 seq2492 104 3e-17 seq3626 102 1e-16 >seq4182 Length=188933 Score = 131 bits (144), Expect = 2e-25 Identities = 172/237 (73%), Gaps = 1/237 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| ||||| | ||||| | || || ||||| || || | || || || | ||| Sbjct 74499 AATGCAGATATTCGTAAAAACCCTTACGGGGAAAACCATCACCCTCGAGGTGGAGGCTTC 74440 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 |||| |||| ||| || ||| ||||| |||||||||||||| || || || || || Sbjct 74439 CGATACTATTGAAAATGTAAAAGCCAAAATTCAAGATAAAGAAGGTATTCCACCGGATCA 74380 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||| | ||||| | ||| ||||| ||||| |||||| | | || ||||| || || || Sbjct 74379 GCAACGTTTGATCTTTGCTGGTAAACAGCTGGAAGATGGCCGCACATTATCCGACTACAA 74320 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTGTAAAATT 156058 ||| || ||| | ||| | ||| | ||||| || |||||||| ||| |||||| Sbjct 74319 TATTCAGAAGGAGTCTACGTTACATCTTGTGTTGAGGTTAAGAGGAGGT-AAAAATT 74264 >seq409 Length=488447 Score = 120 bits (132), Expect = 4e-22 Identities = 153/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 18411 TTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGTATGC 18470 ||||||||||||| || || ||||| ||||| | ||| ||||||||||| || | Sbjct 76193 TTTCTTTGGAATCACGAATGTATGTGTCAATTAATAGAGAGTACATTTCAGAGTGAACAT 76252 Query 18471 TTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATATTGAATCTCGCTAT 18530 ||||||||||||| || || | ||| || |||| ||||| | | ||||| ||| Sbjct 76253 TTTCCATAGCTATTTGGAACCCATAGAAGAATCTGGCCTCAGTAACTTGAACCTCTTGTG 76312 Query 18531 AAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAATGCCAAAA 18590 |||| | || || | ||| ||||| || || || |||| | || |||||||| | || Sbjct 76313 AAAACCGCTCCACTAGATTTTCATTGACAATTCCATCAGATGCGGCAAAAAATGCTAGAA 76372 Query 18591 CATATTTAATGAAATGTTTTTCATTATCCTT 18621 | | ||| ||||||||| | ||| |||||| Sbjct 76373 CGTGTTTTATGAAATGTCTCTCACAATCCTT 76403 >seq2492 Length=83244 Score = 104 bits (114), Expect = 3e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 || ||||| || ||| | || || | || || ||||||||||| |||| || ||| | Sbjct 41915 AACATGCAGATTTTTGTAAAGACCCTCACCGGCAAAACTATTACCCTAGAGGTAGAACCT 41856 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 || || | |||| ||| || || |||||| ||||| ||||| || || || ||||| Sbjct 41855 TCAGACACTATTGAAAATGTAAAGGCTAAAATCCAAGACAAAGAGGGTATCCCGCCAGAC 41796 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 || || || | || | ||| ||||||||||| |||||| | || | || || || Sbjct 41795 CAGCAGAGGCTTATCTTTGCTGGTAAGCAGCTTGAAGATGGTCGCACACTCTCTGACTAC 41736 Query 156000 AATATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 ||||| ||||| | || || ||||| || | ||||| ||||| || Sbjct 41735 AATATCCAAAAAGAATCCACACTCCATTTGGTACTGAGATTGAGAGGTGG 41686 >seq3626 Length=201135 Score = 102 bits (112), Expect = 1e-16 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| ||||||| | || || || || ||||| |||||||| || || Sbjct 59292 AATGCAAATTTTTGTTAAAACTCTCACAGGTAAGACGATTACCTTAGAAGTAGAGCCATC 59351 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 |||| ||| |||||| || ||||| ||||| ||||||||||| ||||| || || Sbjct 59352 AGATACTATCGAAAACGTAAAGGCGAAAATCCAAGACAAAGAAGGCATCCCTCCGGACCA 59411 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGA 155977 ||| | | |||| ||| || || ||||| ||||| Sbjct 59412 GCAACGGCTCATTTTTGCTGGAAAACAGCTGGAAGA 59447 Score = 100 bits (110), Expect = 4e-16 Identities = 137/190 (72%), Gaps = 1/190 (1%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || | |||||||| || |||||||||||||| ||| ||| Sbjct 59977 ATGCAGATCTTTGTCAAGACTCTTACTGGAAAGACCATTACATTAGAAGTTGAACCTTCA 60036 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || ||| ||||| || || || |||||||| |||||||| ||| Sbjct 60037 GACACAATTGAGAATGTCAAAGCCAAAATCCAGGACAAGGAAGGCATCCCTCCAGACCAA 60096 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | || | ||| || ||||| || |||||| |||| | || || ||||| Sbjct 60097 CAGCGACTTATCTTTGCTGGAAAGCAACTGGAAGATGGGCGAACCCTTTCTGACTATAAC 60156 Query 156003 ATATCCAAAG 156012 || || |||| Sbjct 60157 AT-TCAAAAG 60165 Score = 98.7 bits (108), Expect = 1e-15 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 |||||||| ||||| | || ||| | ||||||||||| || || || || || || Sbjct 59062 AAAATGCAGATATTCGTGAAGACACTCACTGGAAAAACCATAACCTTGGAGGTTGAGCCA 59121 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 || |||| ||| ||| || ||| |||||| || || |||||||| || ||||| || Sbjct 59122 TCGGATACAATTGAAAATGTAAAAGCTAAAATTCAGGACAAAGAAGGTATCCCTCCCGAT 59181 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 || || || | || | || || || ||||| |||||| | || | || ||||| Sbjct 59182 CAGCAGCGACTTATCTTCGCAGGGAAACAGCTTGAAGATGGGCGCACACTCTCTGATTAC 59241 Query 156000 AATATATCCAAA-GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 || || || ||| || | |||||||| || || ||| | ||| |||| || Sbjct 59242 AACAT-TCAAAAGGAATCTACGCTTCACTTGGTATTACGCTTACGAGGTGG 59291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731502779724400