Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20nemesis_20[genbank_20GCA_5F002245505.1_202017-08-10] 40,359 sequences; 808,524,533 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq4182 149 1e-30 seq3626 140 6e-28 seq409 131 3e-25 seq2492 127 4e-24 seq688 93.3 8e-14 >seq4182 Length=188933 Score = 149 bits (164), Expect = 1e-30 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192308 TACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAG 192367 |||| ||||| | | || || | |||||| |||| ||| || ||||| || || | Sbjct 74270 TACCTCCTCTTAACCTCAACACAAGATGTAACGTAGACTCCTTCTGAATATTGTAGTCGG 74329 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 ||||||| || |||| |||| ||||||||||||||||| || | || ||||| |||| Sbjct 74330 ATAATGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAGATCAAACGTTGCTGATCCGGTG 74389 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | || |||||||||||||| ||||| ||||||||| |||| ||| || | || | Sbjct 74390 GAATACCTTCTTTATCTTGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGCCTCCA 74449 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 | || || || |||||||| || || | ||||| | |||||||||||| Sbjct 74450 CCTCGAGGGTGATGGTTTTCCCCGTAAGGGTTTTTACGAATATCTGCATT 74499 >seq3626 Length=201135 Score = 140 bits (154), Expect = 6e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||||| ||||| | ||| | || | ||| | |||||| || || || ||| Sbjct 59750 ATACCACCTCGCAGACGCAGTACAAGGTGAAGAGTGGACTCTTTTTGAATGTTGTAGTCA 59691 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | ||||| |||| ||||||||||| ||||||||||| | || |||||| || || Sbjct 59690 GACAGGGTTCGCCCATCTTCCAATTGTTTTCCAGCAAAGATGAGTCGCTGTTGGTCTGGA 59631 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || || || ||||| ||| ||||| || | ||||| | ||| Sbjct 59630 GGGATGCCTTCCTTGTCCTGGATTTTGGCTTTGACATTCTCAATTGTGTCTGAAGGTTCA 59571 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | ||||||||| || ||||| | || |||| ||| |||||||| Sbjct 59570 ACTTCCAAAGTAATGGTCTTTCCAGTAAGAGTCTTAACAAAGATCTGCAT 59521 Score = 138 bits (152), Expect = 2e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAGA 192368 ||||||| ||||||||||| || || ||||| | || ||| || || ||||| ||||| Sbjct 60203 CCACCTCGGAGACGTAATACCAAGTGCAAAGTGGATTCCTTTTGA-ATGTTATAGTCAGA 60145 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 | ||||| |||| |||| ||| || ||||||||||| | || |||||| || || || Sbjct 60144 AAGGGTTCGCCCATCTTCCAGTTGCTTTCCAGCAAAGATAAGTCGCTGTTGGTCTGGAGG 60085 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || ||||| || || || ||||| ||| ||||| || | ||||| | ||| || Sbjct 60084 GATGCCTTCCTTGTCCTGGATTTTGGCTTTGACATTCTCAATTGTGTCTGAAGGTTCAAC 60025 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| |||||||| || ||||| | || || | ||| |||||||| Sbjct 60024 TTCTAATGTAATGGTCTTTCCAGTAAGAGTCTTGACAAAGATCTGCAT 59977 Score = 127 bits (140), Expect = 4e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||||| ||||| | || | || | ||| | |||||| || || || ||| Sbjct 59978 ATACCACCTCGCAGACGGAGAACAAGGTGAAGAGTGGACTCTTTTTGAATGTTGTAGTCA 59919 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | ||||| |||| |||| |||||| ||||||||||| | || |||||| || || Sbjct 59918 GACAGGGTTCGCCCATCTTCCAGTTGTTTTCCAGCAAAGATGAGTCGCTGTTGGTCTGGA 59859 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || || || |||||| ||| ||||| || | ||||| | ||| Sbjct 59858 GGGATGCCTTCCTTGTCCTGGATTTTAGCTTTGACATTCTCAATTGTGTCTGAAGGTTCA 59799 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | |||||| || || ||||| | || || | ||| |||||||| Sbjct 59798 ACTTCCAAAGTAATAGTCTTTCCAGTAAGAGTCTTGACAAAGATCTGCAT 59749 Score = 125 bits (138), Expect = 1e-23 Identities = 172/235 (73%), Gaps = 4/235 (2%) Strand=Plus/Minus Query 192307 ATACCACCTC-TAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAAT 192364 || ||||||| |||| |||||||| || || | |||| || ||| || || || |||| Sbjct 59294 ATTCCACCTCGTAAG-CGTAATACCAAGTGAAGCGTAGATTCCTTTTGA-ATGTTGTAAT 59237 Query 192365 CAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAG 192424 |||| | ||| || |||| || | ||||| || || ||||| | || ||| ||||| | Sbjct 59236 CAGAGAGTGTGCGCCCATCTTCAAGCTGTTTCCCTGCGAAGATAAGTCGCTGCTGATCGG 59177 Query 192425 GTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATT 192484 | || || |||||||| || || |||||| ||||||||| || | ||| || | | Sbjct 59176 GAGGGATACCTTCTTTGTCCTGAATTTTAGCTTTTACATTTTCAATTGTATCCGATGGCT 59117 Query 192485 CTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 | || || | || |||||||| ||||| | ||| || | |||||||||||||| Sbjct 59116 CAACCTCCAAGGTTATGGTTTTTCCAGTGAGTGTCTTCACGAATATCTGCATTTT 59062 >seq409 Length=488447 Score = 131 bits (144), Expect = 3e-25 Identities = 165/225 (73%), Gaps = 4/225 (2%) Strand=Plus/Plus Query 49846 CCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCATTAATCCTCTCTTTT 49905 |||| || || ||||||| |||||||| ||||| || || ||||| | ||| | ||| | Sbjct 75177 CCTCATCTCTTGATATAAGCTCATTACTGAAAGTCAAGCCAGGCATGAGTCCACGCTTCT 75236 Query 49906 TAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCCTCGACACACGCAAATG 49965 | | |||||| || || |||||||| | || || || |||||||| ||| ||||||| Sbjct 75237 TTAACCAAAAGATAGAAGCAAAACTGCCTGAGAAAAAAATACCCTCTACAGCTGCAAATG 75296 Query 49966 CTATTATTCTTGCTCCAAACAT--TAATTTATCATCTAATATCCAATTTATAGCCCAATC 50023 |||| || | | |||||||| | | ||| | | | ||||| | || ||||| || Sbjct 75297 CTATAATACGTTCTCCAAACGTGGCAGTTTTGCTTGCA--ATCCATTGTAGTGCCCAGTC 75354 Query 50024 TGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAATAA 50068 || || ||||| | | |||| | | |||||||||| |||||||| Sbjct 75355 CGCCTTCTTTTTAACACAAGGCAAAGTTTCTATAGCATTAAATAA 75399 Score = 127 bits (140), Expect = 4e-24 Identities = 145/195 (74%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 50106 ATTAATAAAGAATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAAT 50165 ||||||| ||| ||||||||||| || ||| ||||||||||||||| || ||| || Sbjct 76222 ATTAATAGAGAGTACATTTCAGAGTGAACATTTTCCATAGCTATTTGGAACCCATAGAAG 76281 Query 50166 TGTCTTGCTTCTGAATACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACA 50225 ||| || || | | ||||| || | || || || |||| ||| ||| ||| Sbjct 76282 AATCTGGCCTCAGTAACTTGAACCTCTTGTGAAAACCGCTCCACTAGATTTTCATTGACA 76341 Query 50226 ATACCATCAGATGCTGCGAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCT 50285 || ||||||||||| || || ||||||| ||||| ||| || |||||| | ||| ||| Sbjct 76342 ATTCCATCAGATGCGGCAAAAAATGCTAGAACGTGTTTTATGAAATGTCTCTCACAATCC 76401 Query 50286 TTTAAATTTTCCCAA 50300 |||||| |||||||| Sbjct 76402 TTTAAACTTTCCCAA 76416 >seq2492 Length=83244 Score = 127 bits (140), Expect = 4e-24 Identities = 168/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || |||||||| | | | ||| ||||| | || | ||||| |||||| || ||| Sbjct 41683 ATTCCACCTCTCAATCTCAGTACCAAATGGAGTGTGGATTCTTTTTGGATATTGTAGTCA 41742 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | ||| || |||| || | || |||||||||||||| | ||||| || || || Sbjct 41743 GAGAGTGTGCGACCATCTTCAAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGGTCTGGC 41802 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || ||||| ||||| |||||| |||||||| |||| ||||| | |||| Sbjct 41803 GGGATACCCTCTTTGTCTTGGATTTTAGCCTTTACATTTTCAATAGTGTCTGAAGGTTCT 41862 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || ||||| ||||| ||||| || || | || || | ||| |||||||| || Sbjct 41863 ACCTCTAGGGTAATAGTTTTGCCGGTGAGGGTCTTTACAAAAATCTGCATGTT 41915 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || |||||||| | | | ||| ||||| | || | ||||| |||||| || ||| Sbjct 41227 ATCCCACCTCTCAATCTCAGTACCAAATGGAGTGTGGATTCTTTTTGGATATTGTAGTCA 41286 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | ||| || |||| || | || || || |||||||| | ||||| || || ||| Sbjct 41287 GAGAGTGTACGACCATCTTCAAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCTGGT 41346 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || ||||| ||||| ||||| || ||||| |||| || || | || Sbjct 41347 GGGATACCCTCTTTGTCTTGAATTTTGGCCTTAACATTTTCAATAGTGTCCGATGGCTCA 41406 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| |||||||||||||| ||||| || || || | ||| |||||||| Sbjct 41407 ACTTCAAGAGTAATGGTTTTGCCAGTCAAGGTCTTGACAAAAATCTGCAT 41456 >seq688 Length=109112 Score = 93.3 bits (102), Expect = 8e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 125551 AGAAAAGGACAATCTGATGCCCATTTTTTATGATCTTCGCCTGGATCGTCGCCTTCTTTC 125610 || || ||||| | | |||||| ||| ||||||| | | |||||||| ||||| | Sbjct 9747 AGGAATGGACATTGGGGTGCCCACCTTTGATGATCTACAGCAGGATCGTCCCCTTCCACC 9806 Query 125611 CATTGCATTATTTCTACTTTGCAGAAAGCGCATCTTACTTCGTCACCTCTTTGAAGATAA 125670 ||| ||| ||||| |||||||||||||| || | ||||| || || | ||||| Sbjct 9807 CATCTCATGATTTCGACTTTGCAGAAAGCACAGCGCACTTCATCGCCCCGGCCTAGATAG 9866 Query 125671 TAGAAACCATTTTTAGCCAACGTTTCAGGCGAAAGAAACGTTAATGGCCAATTAGTAAAT 125730 ||||| || |||||||| || |||||| | | ||| | | ||||| ||| || Sbjct 9867 TAGAATCCGTTTTTAGCTAAGCGTTCAGGAGTGATAAATGAAACAGGCCACTTATCGAAA 9926 Query 125731 GTTTTTATTCGTTC 125744 ||||| | ||| || Sbjct 9927 GTTTTGAGTCGCTC 9940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 983970925699650