Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20nemesis_20[genbank_20GCA_5F002245505.1_202017-08-10] 40,359 sequences; 808,524,533 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq4182 140 6e-28 seq3626 127 4e-24 seq409 127 4e-24 seq2492 109 1e-18 seq688 93.3 8e-14 >seq4182 Length=188933 Score = 140 bits (154), Expect = 6e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171841 TACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTG 171900 |||| ||||| | | || || | |||||| |||| ||| || |||||| || || | Sbjct 74270 TACCTCCTCTTAACCTCAACACAAGATGTAACGTAGACTCCTTCTGAATATTGTAGTCGG 74329 Query 171901 ATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTG 171960 |||| | || | || |||| |||||||||||||| || || | || || || |||| Sbjct 74330 ATAATGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAGATCAAACGTTGCTGATCCGGTG 74389 Query 171961 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTA 172020 | || |||||||||||||| ||||| ||||||||| |||||||| || | || | Sbjct 74390 GAATACCTTCTTTATCTTGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGCCTCCA 74449 Query 172021 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 | || || || |||||||| || || | ||||| | ||||||||||||| Sbjct 74450 CCTCGAGGGTGATGGTTTTCCCCGTAAGGGTTTTTACGAATATCTGCATT 74499 >seq3626 Length=201135 Score = 127 bits (140), Expect = 4e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||||| || || | ||| | || | ||| | |||||| ||| || || || Sbjct 59750 ATACCACCTCGCAGACGCAGTACAAGGTGAAGAGTGGACTCTTTTTGAATGTTGTAGTCA 59691 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | ||| | || ||||||||||| |||||||| || | || ||||||||| || Sbjct 59690 GACAGGGTTCGCCCATCTTCCAATTGTTTTCCAGCAAAGATGAGTCGCTGTTGGTCTGGA 59631 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || || || ||||| ||| ||||| || || ||||| | ||| Sbjct 59630 GGGATGCCTTCCTTGTCCTGGATTTTGGCTTTGACATTCTCAATTGTGTCTGAAGGTTCA 59571 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | ||||||||| || ||||| | || |||| || |||||||| Sbjct 59570 ACTTCCAAAGTAATGGTCTTTCCAGTAAGAGTCTTAACAAAGATCTGCAT 59521 Score = 120 bits (132), Expect = 5e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||||| || || | || | || | ||| | |||||| ||| || || || Sbjct 59522 ATACCACCTCGCAGACGGAGAACAAGGTGAAGAGTGGACTCTTTTTGAATGTTGTAGTCA 59463 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | ||| |||| |||| ||||| ||||||||||| | | || ||||| || Sbjct 59462 GAAAGGGTACGTCCGTCTTCCAGCTGTTTTCCAGCAAAAATGAGCCGTTGCTGGTCCGGA 59403 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||| ||||| ||||| ||||| || ||||||||||| | ||| Sbjct 59402 GGGATGCCTTCTTTGTCTTGGATTTTCGCCTTTACGTTTTCGATAGTATCTGATGGCTCT 59343 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||||||| ||||| || ||||| || | ||||||| || || |||||| Sbjct 59342 ACTTCTAAGGTAATCGTCTTACCTGTGAGAGTTTTAACAAAAATTTGCATT 59292 Score = 109 bits (120), Expect = 1e-18 Identities = 166/234 (71%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 171840 ATACCACCTC-TAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATC 171898 || ||||||| |||| |||||||| || || | |||| || || ||| || ||||| Sbjct 59294 ATTCCACCTCGTAAG-CGTAATACCAAGTGAAGCGTAGATTCCTTTTGAATGTTGTAATC 59236 Query 171899 TGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGG 171958 || | | || | || || | ||||| || || || || | || ||| || || || Sbjct 59235 AGAGAGTGTGCGCCCATCTTCAAGCTGTTTCCCTGCGAAGATAAGTCGCTGCTGATCGGG 59176 Query 171959 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTC 172018 || || |||||||| || || |||||| ||||||||| || ||||| || | || Sbjct 59175 AGGGATACCTTCTTTGTCCTGAATTTTAGCTTTTACATTTTCAATTGTATCCGATGGCTC 59116 Query 172019 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || || | || |||||||| ||||| | ||| || | ||||||||||||||| Sbjct 59115 AACCTCCAAGGTTATGGTTTTTCCAGTGAGTGTCTTCACGAATATCTGCATTTT 59062 >seq409 Length=488447 Score = 127 bits (140), Expect = 4e-24 Identities = 163/222 (73%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 39150 TCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCATTAATCCTCTCTTTTTA 39209 || || || ||||||| |||||||| ||||| || || ||||| | ||| | ||| || Sbjct 75179 TCATCTCTTGATATAAGCTCATTACTGAAAGTCAAGCCAGGCATGAGTCCACGCTTCTTT 75238 Query 39210 AGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCCTCCACACACGCAAATGCT 39269 | |||||| || || |||||||| | || || || |||||||| ||| ||||||||| Sbjct 75239 AACCAAAAGATAGAAGCAAAACTGCCTGAGAAAAAAATACCCTCTACAGCTGCAAATGCT 75298 Query 39270 ATTATTCTTGCTCCAAACAT-TAATTTATCATCTAAAATCCAATTTATGGCCCAATCTGC 39328 || || | | |||||||| | | || | | | |||||| | || ||||| || || Sbjct 75299 ATAATACGTTCTCCAAACGTGGCAGTTTTGCT-TGCAATCCATTGTAGTGCCCAGTCCGC 75357 Query 39329 tttttttttGATAGAAGGTATATTTTCTATAGCTTTAAATAA 39370 || ||||| | | |||| | | |||||||||| |||||||| Sbjct 75358 CTTCTTTTTAACACAAGGCAAAGTTTCTATAGCATTAAATAA 75399 Score = 107 bits (118), Expect = 3e-18 Identities = 136/187 (73%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 39416 AGAATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGC 39475 ||| ||||||||||| || ||| ||||||||||||||| || ||| || || || Sbjct 76230 AGAGTACATTTCAGAGTGAACATTTTCCATAGCTATTTGGAACCCATAGAAGAATCTGGC 76289 Query 39476 TTCTGAATACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATC 39535 || | | ||||| || | || || || |||| ||| ||| ||||| ||||| Sbjct 76290 CTCAGTAACTTGAACCTCTTGTGAAAACCGCTCCACTAGATTTTCATTGACAATTCCATC 76349 Query 39536 AGATGCTGCGAAGAATGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAAATT 39595 |||||| || || ||||||| ||| | ||| || |||||| | ||| ||| |||||| | Sbjct 76350 AGATGCGGCAAAAAATGCTAGAACGTGTTTTATGAAATGTCTCTCACAATCCTTTAAACT 76409 Query 39596 TTCCCAA 39602 ||||||| Sbjct 76410 TTCCCAA 76416 Score = 89.7 bits (98), Expect = 9e-13 Identities = 117/158 (74%), Gaps = 12/158 (8%) Strand=Plus/Plus Query 38776 ATTAAAAACT-AGCATCTAAGGTAAAAATTGCATTATCACTATTCATCA--CATTGT--- 38829 ||| |||||| |||||| || ||||| | ||||||| || |||| |||| Sbjct 74160 ATTTAAAACTCAGCATCCAATGTAAACA---CATTATC-CTCAGGATCAGCCATTACTCC 74215 Query 38830 --ATTTTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATAT 38887 |||| ||||||||| ||||| || || |||||||| || ||||||||||| || || Sbjct 74216 CCATTTCTGGTATTCACCTACTTTCTTCTCAAAAAAGTTGGTCTTTCCTTCTAAAGAGAT 74275 Query 38888 TAAATTCATAAAATCAAATGGATTTTTGGTATTATAAT 38925 | |||||||| ||||||||||| || || || |||| Sbjct 74276 GAGGTTCATAAAGTCAAATGGATTCTTCGTGTTGTAAT 74313 >seq2492 Length=83244 Score = 109 bits (120), Expect = 1e-18 Identities = 164/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || |||||||| | || | ||| ||||| | || | ||||| ||||| || || Sbjct 41683 ATTCCACCTCTCAATCTCAGTACCAAATGGAGTGTGGATTCTTTTTGGATATTGTAGTCA 41742 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | || | || || | || ||||||||||| || | ||||| ||||| || Sbjct 41743 GAGAGTGTGCGACCATCTTCAAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGGTCTGGC 41802 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || ||||| ||||| |||||| |||||||| ||||| ||||| | |||| Sbjct 41803 GGGATACCCTCTTTGTCTTGGATTTTAGCCTTTACATTTTCAATAGTGTCTGAAGGTTCT 41862 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || ||||| ||||| ||||| || || | || || | || |||||||| || Sbjct 41863 ACCTCTAGGGTAATAGTTTTGCCGGTGAGGGTCTTTACAAAAATCTGCATGTT 41915 Score = 100 bits (110), Expect = 5e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || |||||||| | || | ||| ||||| | || | ||||| ||||| || || Sbjct 41227 ATCCCACCTCTCAATCTCAGTACCAAATGGAGTGTGGATTCTTTTTGGATATTGTAGTCA 41286 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | || | || || | || || || ||||| || | ||||| ||||| ||| Sbjct 41287 GAGAGTGTACGACCATCTTCAAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCTGGT 41346 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || ||||| ||||| ||||| || ||||| ||||| || || | || Sbjct 41347 GGGATACCCTCTTTGTCTTGAATTTTGGCCTTAACATTTTCAATAGTGTCCGATGGCTCA 41406 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| |||||||||||||| ||||| || || || | || |||||||| Sbjct 41407 ACTTCAAGAGTAATGGTTTTGCCAGTCAAGGTCTTGACAAAAATCTGCAT 41456 >seq688 Length=109112 Score = 93.3 bits (102), Expect = 8e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 104974 AGAAAAGGACATTTTGATGCCCATTTTTTATGATCTTCGCCTGGATCGTCGCCTTCTTTC 105033 || || ||||||| | |||||| ||| ||||||| | | |||||||| ||||| | Sbjct 9747 AGGAATGGACATTGGGGTGCCCACCTTTGATGATCTACAGCAGGATCGTCCCCTTCCACC 9806 Query 105034 CATTGCATTATTTCTACTTTGCAGAAAGCGCATCTTACTTCGTCACCTCTTTGAAGATAA 105093 ||| ||| ||||| |||||||||||||| || | ||||| || || | ||||| Sbjct 9807 CATCTCATGATTTCGACTTTGCAGAAAGCACAGCGCACTTCATCGCCCCGGCCTAGATAG 9866 Query 105094 TAGAAACCATTTTTTGCCAACGTTTCAGGTGAAAGAAACGTCAATGGCCAATTAGTAAAT 105153 ||||| || ||||| || || |||||| | | ||| | | ||||| ||| || Sbjct 9867 TAGAATCCGTTTTTAGCTAAGCGTTCAGGAGTGATAAATGAAACAGGCCACTTATCGAAA 9926 Query 105154 GTTTTTATTCGTTC 105167 ||||| | ||| || Sbjct 9927 GTTTTGAGTCGCTC 9940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904679370202200