Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20nemesis_20[genbank_20GCA_5F002245505.1_202017-08-10] 40,359 sequences; 808,524,533 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq688 197 1e-45 seq4182 131 1e-25 seq3626 100 2e-16 SEQ23448 91.5 1e-13 >seq688 Length=109112 Score = 197 bits (218), Expect = 1e-45 Identities = 367/531 (69%), Gaps = 12/531 (2%) Strand=Plus/Minus Query 103568 AACGGGTTCTTCTACTTGGGCCGCGGCGACGAAGTGCGCTGCGCGTTTTGCAAAGTGGAG 103627 ||||| |||| ||| | ||||| ||||| ||||||||||| || || |||||||| || Sbjct 9877 AACGGATTCTACTATCTAGGCCGGGGCGATGAAGTGCGCTGTGCTTTCTGCAAAGTCGAA 9818 Query 103628 ATTATGCGCTGGGAGGAGGGCGACGACCCGGCTCGCGATCATCAGAGGTGGGCGCCGCAG 103687 || ||| | |||| ||| || ||||| || ||| |||||||| |||||||| || || Sbjct 9817 ATCATGAGATGGGTGGAAGGGGACGATCCTGCTGTAGATCATCAAAGGTGGGCACCCCAA 9758 Query 103688 TGTCCGTTCCTGaaaaaaaCGGCTGCTGGCGCGCTGCCCGCCGGCCTTGCG---ATG-GA 103743 ||||| ||||| || | | | |||||| |||| | || | || || || Sbjct 9757 TGTCCATTCCT-AAGACATCAA--GCTGGCAATGTGCC-GATGGATTCGCCTACATCTGA 9702 Query 103744 CGGGCAGGACGAGTGCGGCGTGAGCGCGCTGCCG--TCCACCAACGCCTGCGTGCGCATG 103801 ||| | ||||| || || || |||| | | || | | ||||| | | || Sbjct 9701 CGGCCGTGACGAATGTGGAACAAGAGCGCCGACAACTCAAGCTGCGCCTA--TCCATATT 9644 Query 103802 CCCGGCCCCGCGCACCCTCGGTTCGCCTCCGAGGCCTCAAGGTTACAAACTTTTAAGGAT 103861 || | ||||| ||||| || | || ||||| || | | | | || ||| ||| Sbjct 9643 CCACGACCCGCTCACCCCCGATATGCATCCGAAGCTGCCCGTCTCCGTACATTTGTCGAT 9584 Query 103862 TGGCCCCGGAGTCTGAAACAGAAACCGGAGAAGATGGCCGAAGCCGGATTCTACTACACC 103921 ||||| || ||| || ||| || || ||| || | |||||||| || |||| |||||| Sbjct 9583 TGGCCTCGCAGTATGCGACAAAAGCCTGAGGAGCTAGCCGAAGCTGGTTTCTTCTACACT 9524 Query 103922 GGCCACAGCGACAACACGAAATGCTTCTACTGCGACGGTGGTCTAAAGGATTGGGAGCAC 103981 || || | ||||| ||||||||||| | ||| ||||||||| | ||||| ||||| | Sbjct 9523 GGTCAAGGAGACAAAACGAAATGCTTTTTCTGTGACGGTGGTTTGAAGGACTGGGAAAAT 9464 Query 103982 GATGATGAGCCGTGGCAACAACACGCGCTTTTCTTTCGCCGTTGCGCATACGTGCTACTT 104041 || ||| || ||| | ||||| || | || || || || || ||||| | |||| Sbjct 9463 GACGATATTCCCTGGGAGCAACATGCACGTTGGTTCGATCGATGTGCCTACGTCCAACTT 9404 Query 104042 GTCAAGGGCCACGATTATGTACAAAAGGTCGTGACCCAATCGTGTGTTGTT 104092 ||||| || | || |||||||||||||| | | || |||||| |||| Sbjct 9403 GTCAAAGGACGAGAGTATGTACAAAAGGTTATATCGGAAGCGTGTGCTGTT 9353 >seq4182 Length=188933 Score = 131 bits (144), Expect = 1e-25 Identities = 170/235 (72%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||| || || || ||||| | || || |||||||| ||| |||| ||||||| Sbjct 74499 AATGCAGATATTCGTAAAAACCCTTACGGGGAAAACCATCACCCTCGAGGTGGAGGCTTC 74440 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||||| | | | |||||| || ||| ||||||||||| | || |||||| Sbjct 74439 CGATACTATTGAAAATGTAAAAGCCAAAATTCAAGATAAAGAAGGTATTCCACCGGATCA 74380 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||| | | || | ||| |||||||||||||| || | | ||| | | |||||||| Sbjct 74379 GCAACGTTTGATCTTTGCTGGTAAACAGCTGGAAGATGGCCGCACATTATCCGACTACAA 74320 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAAATAAT 107789 ||||| |||||||||||||| || | |||||||| || |||| || || ||| Sbjct 74319 TATTCAGAAGGAGTCTACGTTACATCTTGTGTTGAGGTTAAGAGGAGGTAAAAAT 74265 >seq3626 Length=201135 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 ||||||||||||||| |||||| | ||||| || || |||||| | ||| ||| | Sbjct 59292 AATGCAAATTTTTGTTAAAACTCTCACAGGTAAGACGATTACCTTAGAAGTAGAGCCATC 59351 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 |||||| ||| | ||||| || || || ||||||||| | || ||| || Sbjct 59352 AGATACTATCGAAAACGTAAAGGCGAAAATCCAAGACAAAGAAGGCATCCCTCCGGACCA 59411 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||| | || |||| ||| || ||||||||||| |||| || | | |||||||| Sbjct 59412 GCAACGGCTCATTTTTGCTGGAAAACAGCTGGAAGACGGACGTACCCTTTCTGACTACAA 59471 Query 107735 CATTCAAAAGGAGTCTAC 107752 ||||||||| ||||| || Sbjct 59472 CATTCAAAAAGAGTCCAC 59489 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 |||||||| || || || || || | || || |||||||| ||| | || ||| | Sbjct 59062 AAAATGCAGATATTCGTGAAGACACTCACTGGAAAAACCATAACCTTGGAGGTTGAGCCA 59121 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 ||||| | | | |||||| || ||| || |||||||| | || ||| Sbjct 59122 TCGGATACAATTGAAAATGTAAAAGCTAAAATTCAGGACAAAGAAGGTATCCCTCCCGAT 59181 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 |||||| ||||||| | || || |||||||| || || | ||| | | || ||| Sbjct 59182 CAGCAGCGACTTATCTTCGCAGGGAAACAGCTTGAAGATGGGCGCACACTCTCTGATTAC 59241 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784 |||||||||||||| |||||| | ||| |||| || | || ||||| |||| Sbjct 59242 AACATTCAAAAGGAATCTACGCTTCACTTGGTATTACGCTTACGAGGTGGAA 59293 >SEQ23448 Length=38375 Score = 91.5 bits (100), Expect = 1e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 94241 TGGCCCATGCGATGAATACGGTCTTGCGCCTGCAGCTCGATCTGCGGGTTCCAGTGGGGC 94300 ||||||| ||| | || ||||| ||||||||| |||||| |||||||||||||||||| Sbjct 9799 TGGCCCACGCGGTAGATGCGGTCCTGCGCCTGCTGCTCGAGCTGCGGGTTCCAGTGGGGG 9740 Query 94301 TCCAGCATAATAATGTGATTGCCGCCGGTTAGGTTTAACCCCACGCCGCC 94350 ||||||| | | ||| ||| | ||| ||||| | |||||||| || Sbjct 9739 TCCAGCACCAGCAGGTGGTTGGCCCCGCACAGGTTCAGTCCCACGCCACC 9690 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398680602349351