Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20nemesis_20[genbank_20GCA_5F002245505.1_202017-08-10] 40,359 sequences; 808,524,533 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq4459 246 7e-60 seq4144 120 7e-22 >seq4459 Length=154925 Score = 246 bits (272), Expect = 7e-60 Identities = 529/785 (67%), Gaps = 7/785 (1%) Strand=Plus/Plus Query 110370 CCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAAGCTGTT 110429 || ||||| ||| | | ||||| || ||||| || |||||| | || ||| | | | | Sbjct 142247 CCACAACATATGCTAATGCGTGTAGCTATTGGAATACATGGAGAAGACATTGATTCAGCT 142306 Query 110430 ATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCTATTCATGCTACTCCTACCCTATTT 110489 ||| | ||| | |||| | | ||| | | ||| || | |||||| ||||| Sbjct 142307 ATTAACACCTATAACTTATTGTCTGAGAAGTATTTCACTCACGCCAGTCCTACTTTATTT 142366 Query 110490 AACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGA-ATTAACGATGA 110548 || | ||| || |||||| | ||||| |||||| | || || || ||||| Sbjct 142367 TCTGCTGCTACTCCAAGACCTCAATTGTCATCTTG-TTTCTTATTGGCCATGAAAGATGA 142425 Query 110549 TTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAAAACTCTGG 110608 |||||| || || ||||| |||| ||| || ||| | || |||||| | || Sbjct 142426 CAGTATTGAGGGAATATATGACACTCTGAAACAATGTGCCTTGATATCTAAATCTGCAGG 142485 Query 110609 AGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCAACAGCGAA 110668 || ||||| |||| ||||| ||| | | ||||| || ||| || | || Sbjct 142486 TGGCATTGGGCTTCATGTTCACTGTATCAGAGCTAAAGGTACATGTATAGCTGGCACAAA 142545 Query 110669 GGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGT 110728 |||| |||| ||||||||| |||||||||||||| | ||| ||| || | |||||| Sbjct 142546 TGGTGTATCAAATGGACTTGTCCCAATGTTAAGAGTATATAACAGCACAGCCAGATATGT 142605 Query 110729 GAATCAAGGTGGTAAGAGAAAT---GGCTCATTTGCTATCTATCTCGAACCTTGGCATTC 110785 ||||||||||||| | | || |||||||| | ||| | ||||| |||||||| Sbjct 142606 AGATCAAGGTGGTAACAAGCGTCCAGGGGCATTTGCTGTATATTTAGAACCATGGCATTC 142665 Query 110786 AGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACG 110845 |||| | ||||| || ||||| || || ||| || |||||| |||| | Sbjct 142666 AGATGTGTTTGAGTTTTTAGATCTGAAAAAGAATACTGGCAAAGAAGAAGTTCGAGCTAG 142725 Query 110846 TGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGG 110905 || || |||||||| | ||||| ||||||| || |||||| | ||| || |||||| Sbjct 142726 GGAATTGTTTTATGCTTTATGGATACCAGATTTGTTTATGAAAAGAGTTGAAAAAAATGA 142785 Query 110906 CATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGA 110965 | ||| | | |||||||| ||| | ||||||| | | ||| | ||| |||| Sbjct 142786 AAATTGGAGTTTGATGTGTCCCCATGACTGTCCTGGTTTGGCAGATTGTTGGGGAGAAGA 142845 Query 110966 GTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAAACAAATTCCAGC 111025 |||||||| || || ||||| ||||| || ||| | ||| ||||||| | || Sbjct 142846 GTTTGAAGCTCTGTATGAAAAGTATGAGAATGAAAAAAGATTTGTCAAACAAGTAAGGGC 142905 Query 111026 TCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTCCTTATATTTT 111085 |||| | ||| || | ||| ||||||||||||| || ||||| | || || Sbjct 142906 ACAAGTTTTATGGAAGGCTATTGTAGAAGCACAAGTTGAAACAGGCACTCCATTCATGTT 142965 Query 111086 GTATAAAGA-TCATATTAATCGCAAATCTAATCAAATGAATTTAGGAACAATTAAGTCTA 111144 || ||||| |||| ||| | || |||||| | ||| ||||||||||||| | || Sbjct 142966 ATACAAAGATTCAT-GTAACAGAAAGAGTAATCAGAAAAATCTAGGAACAATTAAATGTA 143024 Query 111145 GTAAT 111149 ||||| Sbjct 143025 GTAAT 143029 Score = 96.9 bits (106), Expect = 8e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 112576 AAGTGACAAAAGTTATTACACGTAACCTAAATAAAATTATTGACAAAACGACCTATCCAA 112635 |||| |||||| | || |||| ||||| ||||||||||| || | |||||| Sbjct 143151 AAGTTACAAAAATCATAACACAAAACCTTAATAAAATTATAGATGTCAATTATTATCCAG 143210 Query 112636 TTCAAAAAGCAAAACATTCTAATAACAAGCATAGACCAATTGGCATTGGCGTACAAGGAT 112695 ||| | |||| ||| | || |||| ||||||||||| || ||||| || ||||| | Sbjct 143211 TTCCAGAAGCTAAAAACTCCAATATGCGACATAGACCAATAGGTATTGGAGTCCAAGGTT 143270 Query 112696 TAGCTGATGTATTTATGATGATGCGAATTCCTTTTGATTCTGACCGTGCTAAATTCTTAA 112755 ||||||||| ||| || ||||||| |||| ||| ||| || || |||| Sbjct 143271 TAGCTGATGCCTTTGTGCTGATGCGCTACCCTTATGAAAGTGAAAAAGCATTGTTGTTAA 143330 Query 112756 ATGAAAAGATTTTCGAAACAATCTATTTCGCTGCTATG 112793 | || |||| || || || ||||||| || ||| || Sbjct 143331 ACCAACAGATATTTGAGACTATCTATTACGGAGCTTTG 143368 >seq4144 Length=328530 Score = 120 bits (132), Expect = 7e-22 Identities = 138/186 (74%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 305307 GACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGT 305366 |||| |||| || |||||| ||| | ||||| || || || || |||| |||||| Sbjct 147344 GACACTTGAGAGATGATGATTTAGTTATATTCAACAGACAGCCTACATTGCACAAAATGA 147403 Query 305367 CTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGTG 305426 |||||||| ||| | ||| || || | || | | || |||||| | ||| ||||| Sbjct 147404 GTATGATGGGTCACAGAGTAAAGGTTCTTCCTTGGTCAACGTTTCGAATGAATTTAAGTT 147463 Query 305427 CTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAAT 305486 | | |||| ||||| || || ||||||||||||||||||||| ||||||| || |||| Sbjct 147464 GTACTTCGCCATATAACGCTGACTTTGATGGAGATGAAATGAATTTGCATGTCCCACAAT 147523 Query 305487 CAAAGG 305492 ||| || Sbjct 147524 CAATGG 147529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186199099471999