Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20nemesis_20[genbank_20GCA_5F002245505.1_202017-08-10] 40,359 sequences; 808,524,533 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq688 105 5e-18 seq2492 87.8 1e-12 seq3626 84.2 2e-11 >seq688 Length=109112 Score = 105 bits (116), Expect = 5e-18 Identities = 321/484 (66%), Gaps = 23/484 (5%) Strand=Plus/Minus Query 99638 AACGGGTTTTATTATTTGGGGCGCGCGGACGAAGTGCGCTGCGCGTTTTGCAAAGTTGAA 99697 ||||| || || ||| | || || | || ||||||||||| || || |||||||| ||| Sbjct 9877 AACGGATTCTACTATCTAGGCCGGGGCGATGAAGTGCGCTGTGCTTTCTGCAAAGTCGAA 9818 Query 99698 ATAATGCGCTGGTTGGAGGGCGACGACCCGGCTGCAGATCATAAACGATGGGCGCCGCAA 99757 || ||| | ||| |||| || ||||| || |||| ||||||| || | ||||| || ||| Sbjct 9817 ATCATGAGATGGGTGGAAGGGGACGATCCTGCTGTAGATCATCAAAGGTGGGCACCCCAA 9758 Query 99758 TGCCCGTT--TATG-CAGCAGAATCGAACGGTTGCTACGGTCATTC-----AATC--AC- 99806 || || || || | || || | | | || | | || |||| ||| || Sbjct 9757 TGTCCATTCCTAAGACATCAAGCTGGCAATGTGCCGATGG--ATTCGCCTACATCTGACG 9700 Query 99807 -CAGTG-CAAAT-TGTTAGTAAA--GATGA-ATGTAAATTGTCGCGTA---AAATGTCCG 99857 | ||| | ||| || | | | | || | | || ||| || | || | Sbjct 9699 GCCGTGACGAATGTGGAACAAGAGCGCCGACAACTCAAGCTGCGCCTATCCATATTCCAC 9640 Query 99858 GCCCCGTGCACCCTAAATACGGCACTAAATCTGCACGTTTAGAAACTTTTGTGGATTGGC 99917 | |||| ||||| ||| | | || |||| ||| | || ||||| ||||||| Sbjct 9639 GACCCGCTCACCCCCGATATGCATCCGAAGCTGCCCGTCTCCGTACATTTGTCGATTGGC 9580 Query 99918 CGCTCAGTTTGAAACAAAAACCAGAGCAATTGGCCGAAGCCGGTTTTTATTACACCGGCA 99977 | | |||| || |||||| || ||| | | |||||||| ||||| | ||||| || Sbjct 9579 CTCGCAGTATGCGACAAAAGCCTGAGGAGCTAGCCGAAGCTGGTTTCTTCTACACTGGTC 9520 Query 99978 AAGGTGACAAAGTTAAATGTTTTCATTGCGACGGCGGCCTCAAAGACTGGGAAAGCACCG 100037 |||| |||||| ||||| ||| || ||||| || | || |||||||||| || Sbjct 9519 AAGGAGACAAAACGAAATGCTTTTTCTGTGACGGTGGTTTGAAGGACTGGGAAAATGACG 9460 Query 100038 ACGAGCCGTGGCATGAACACGCACGTTGGTTTGATCGCTGCACATACGTGCGGCTTGT-A 100096 | || ||| | |||| ||||||||||| ||||| || | ||||| | ||||| | Sbjct 9459 ATATTCCCTGGGAGCAACATGCACGTTGGTTCGATCGATGTGCCTACGTCCAACTTGTCA 9400 Query 100097 AAGG 100100 |||| Sbjct 9399 AAGG 9396 >seq2492 Length=83244 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 106260 aTGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| |||||||| || || ||||||||||| |||||||| | ||| || || Sbjct 41456 ATGCAGATTTTTGTCAAGACCTTGACTGGCAAAACCATTACTCTTGAAGTTGAGCCATCG 41397 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || || ||| | || || |||||| |||||||| || | || || || Sbjct 41396 GACACTATTGAAAATGTTAAGGCCAAAATTCAAGACAAAGAGGGTATCCCACCAGACCAG 41337 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGAT--TCTAAAACTATGGGCGATTACA 106437 || ||||| || | ||| ||||| || | |||||| || | ||| | | | |||| Sbjct 41336 CAGAGGCTCATCTTTGCCGGCAAGCAGCTTGAAGATGGTCGTACACTCTCTG--ACTACA 41279 Query 106438 ACATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 | || ||||||||||| ||||| ||||| ||| |||| || |||| || Sbjct 41278 ATATCCAAAAAGAATCCACACTCCATTTGGTACTGAGATTGAGAGGTGG 41230 >seq3626 Length=201135 Score = 84.2 bits (92), Expect = 2e-11 Identities = 160/234 (68%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 106256 aaaaaTGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACC 106315 ||||||||| || || || || ||| | ||||| || ||||| ||| |||| || || Sbjct 59061 AAAAATGCAGATATTCGTGAAGACACTCACTGGAAAAACCATAACCTTGGAGGTTGAGCC 59120 Query 106316 CGGCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGA 106375 ||| | ||| | || ||| |||||| ||||||||||| | || || Sbjct 59121 ATCGGATACAATTGAAAATGTAAAAGCTAAAATTCAGGACAAAGAAGGTATCCCTCCCGA 59180 Query 106376 TCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATT--CTAAAACTATGGGCGAT 106433 ||| || | ||||| | || || ||||| | |||||| | | ||| | | || Sbjct 59181 TCAGCAGCGACTTATCTTCGCAGGGAAACAGCTTGAAGATGGGCGCACACTCTCTG--AT 59238 Query 106434 TACAACATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGGA 106487 |||||||| ||||| |||||||| || || || ||||| | |||||||| ||| Sbjct 59239 TACAACATTCAAAAGGAATCTACGCTTCACTTGGTATTACGCTTACGAGGTGGA 59292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 402131704002272