Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20nemesis_20[genbank_20GCA_5F002245505.1_202017-08-10] 40,359 sequences; 808,524,533 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq4459 699 0.0 seq409 109 8e-19 >seq4459 Length=154925 Score = 699 bits (774), Expect = 0.0 Identities = 1224/1771 (69%), Gaps = 18/1771 (1%) Strand=Plus/Minus Query 68365 TTATCCAATGTAAACTGAATGGGTGAGGATGCGGGTTTTGTACGTAGATAGTACATACCG 68424 ||||| | |||||| || || | | ||| ||||||||||||| ||| ||||| || Sbjct 144009 TTATCTACTGTAAATTGGATTGCATTTGCTGCAGGTTTTGTACGTAAATAATACATGCCT 143950 Query 68425 GTTTTCAGACCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGA 68484 ||||| | ||| | |||| | || ||||| || || ||||| |||| |||| Sbjct 143949 GTTTTTAAACCCATTTTCCAAGCATAAAAATGTATGGACGTCAGTTTACCATAATTTGGT 143890 Query 68485 TCGGCTATATGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCC 68544 || |||| ||||||||| | || |||||||| || || || || |||||||| || ||| Sbjct 143889 TCAGCTACATGAATATTAAAAGACTGACTTTGGTCTATAAATGCACCTCTATCAGCAGCC 143830 Query 68545 ATTTTTATAATACTCTTTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCA 68604 || | ||| || | || || ||||||||| | |||||| | | | | ||||||| Sbjct 143829 ATCTGAATAGTAGTTTTCACAGAAATTTCCCATACTGTCTTATACAAATCTCTGATATCT 143770 Query 68605 TCTGGAA--GGCTCG-TATTTTGAATGGATCCACCATCGGATATAATTATATTCTTGATC 68661 | |||| | || |||| |||| || ||| || | ||| | ||| || || Sbjct 143769 TTGGGAATAGTTTCAATATTCTGAACTGAACCATTATTATGAAGAATAAGATTTTTCATG 143710 Query 68662 TCATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTAACTATTTGA 68721 ||||| | ||| || | | | || ||| |||| | ||||| ||||||| | |||| Sbjct 143709 TCATCGTCCCATAAATCTGCTTGAGTCAAATCTCTTAAAAGATGATGATTAACGACTTGA 143650 Query 68722 AATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCA 68781 ||||| || ||||| |||| | ||| ||||| || ||||||| | |||||| Sbjct 143649 AATTCGCCTGATAATACTCGTCTTTGGTATATATTTGAAGTGAATGGTTCAAAGGATTCA 143590 Query 68782 TTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTT 68841 ||||| || || || ||||| || ||||| ||||||||||| |||| | | | ||| Sbjct 143589 TTATTGCCAAGTATCTGAGCCGTAGATGCCGTTGGCATAGGCGCCAGTAGCAGAGAATTA 143530 Query 68842 CTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGATGGT 68901 | || |||||| | ||||| ||||| ||| ||||||||| ||||||| || Sbjct 143529 CGAATTCCATGTTTAGCTATTTTTTCTTTAAGAGCAACCCAATCCCAGAGATCAGTGGGA 143470 Query 68902 ACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCATTATATGTT 68961 |||||| | ||| |||| | ||| || | || || || | ||||| Sbjct 143469 GTCTTATTCCACATATCAAATTGCAAAATCCCTTGGCTAACAGGACTACCTTCATATGAA 143410 Query 68962 TCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTAATAAATT 69021 |||| ||| || | || |||| |||||| || || || || || |||||||| || Sbjct 143409 CTATAAACTCCCTCTTTCTCTGCTAATTCACAGCTAGCTTCCAAAGCTCCGTAATAGATA 143350 Query 69022 GTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGATAATGTAAA 69081 || || || |||| | || | ||||| | ||| || | || || | | Sbjct 143349 GTCTCAAATATCTGTTGGTTTAACAACAATGCTTTTTCACTTTCATAAGGGTAGCGCATC 143290 Query 69082 AGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTT 69141 || | ||| ||||| || || || || || |||||||| || |||||||||| | |||| Sbjct 143289 AGCACAAAGGCATCAGCTAAACCTTGGACTCCAATACCTATTGGTCTATGTCGCATATTG 143230 Query 69142 GAACTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATTTCGG 69201 || ||| ||||||||||| ||||||||||| | |||||||||||||||||| ||| | Sbjct 143229 GAGTTTTTAGCTTCTGGAACTGGATAATAATTGACATCTATAATTTTATTAAGGTTTTGT 143170 Query 69202 ACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATCGTC---CATCTATAACA 69258 || | ||| || || |||| || ||||| || || |||| | ||| Sbjct 143169 GTTATGATTTTTGTAACTTCTTTTAACTTTCCAAAATTGTATGTTCTATCATCATTTACA 143110 Query 69259 AACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCAT-TA--GAATTTGCA 69315 |||||||||| || | ||| |||| |||||| |||||||| |||| || || || | Sbjct 143109 AACATATTCAAAGCAATAGAAGCTAAATTACATACTGCTACTTCATCTACTGA---TGTA 143053 Query 69316 TATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTA 69375 |||| || ||| ||||||||||||||||||||||| || || || ||||||| ||||||| Sbjct 143052 TATTCTACTATTTCTGTACATAGATTACTACATTTAATTGTTCCTAGATTTTTCTGATTA 142993 Query 69376 CTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGAT 69435 |||||| ||||||| | || ||||| | || || ||||| || ||||||| || | | Sbjct 142992 CTCTTTCTGTTACATGAATCTTTGTATAACATGAATGGAGTGCCTGTTTCAACTTGTGCT 142933 Query 69436 TCGATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTAA--CGCTTCTCTT 69493 || | ||||| ||||| | || || ||| | || | || | || || | Sbjct 142932 TCTACAATAGCCTTCCATAAAACTTGTGCCCTTACT--TGTTTGACAAATCTTTTTTCAT 142875 Query 69494 TTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGAC 69553 | ||||| | | ||| || ||| || || ||||||||| ||| |||| ||||||| Sbjct 142874 TCTCATACTTTTCATACAGAGCTTCAAACTCTTCTCCCCAACAATCTGCCAAACCAGGAC 142815 Query 69554 ATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGAT 69613 | |||| ||||||||||| ||| |||| | | ||||| ||||||||| | || Sbjct 142814 AGTCATGGGGACACATCAAACTCCAATTTTCATTTTTTTCAACTCTTTTCATAAACAAAT 142755 Query 69614 CGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAtttt 69673 | || ||||| | ||| ||| | || || | || | |||||| || || ||||| | Sbjct 142754 CTGGTATCCATAAAGCATAAAACAATTCCCTAGCTCGAACTTCTTCTTTGCCAGTATTCT 142695 Query 69674 ttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGA 69733 |||| ||||| | |||||| | | ||| |||||||||||||||| ||||| || | Sbjct 142694 TTTTCAGATCTAAAAACTCAAACACATCTGAATGCCATGGTTCTAAATATACAGCAAATG 142635 Query 69734 CTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCA 69793 | || || || || || || || ||||||| |||||||| ||| | ||||| ||||| | Sbjct 142634 CCCCTGGACGCTTGTTACCACCTTGATCTACATATCTGGCTGTGCTGTTATATACTCTTA 142575 Query 69794 GCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGC 69853 ||| || | || ||||| ||| ||||||||| |||| ||| | | ||| | || | Sbjct 142574 ACATTGGGACAAGTCCATTTGATACACCATTTGTGCCAGCTATACATGTACCTTTAGCTC 142515 Query 69854 GAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTT 69913 ||| || | || || || || ||||| |||||| || | ||||| ||| Sbjct 142514 TGATACAGTGAACATGAAGCCCAATGCCACCTGCAGATTTAGATATCAAGGCACATTGTT 142455 Query 69914 TCAATGTGTCATATATACCCTCTATGCTATCATCTATCAT-GTTAAGAAGAAAACAGCTA 69972 ||| ||||||||||| ||||| || || |||||| |||| | || |||||| || | Sbjct 142454 TCAGAGTGTCATATATTCCCTCAATACTGTCATCTTTCATGGCCAATAAGAAACAAGAT- 142396 Query 69973 GACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCAT 70032 |||| |||| | | ||| | ||| |||||| |||||| ||||||||||| | Sbjct 142395 GACAATTGAGGTCTTGGAGTAGCAGCAGAAAATAAAGTAGGACTGGCGTGAGTGAAATAC 142336 Query 70033 TTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCT 70092 || ||||| | | || || || | ||||||||| || || || ||| ||||| Sbjct 142335 TTCTCAGACAATAAGTTATAGGTGTTAATAGCTGAATCAATGTCTTCTCCATGTATTCCA 142276 Query 70093 ATCGCGACACGCATCAACATATGCTGAGGTC 70123 || || |||||||| | |||||| || |||| Sbjct 142275 ATAGCTACACGCATTAGCATATGTTGTGGTC 142245 Score = 120 bits (132), Expect = 4e-22 Identities = 124/161 (77%), Gaps = 1/161 (1%) Strand=Plus/Minus Query 70338 AAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAATAGC 70397 |||| ||||||| ||||||||||||||||| || ||||||||||| ||||| || | ||| Sbjct 137567 AAAT-GTTTTTTGGTTTCCTTGTGTAAATTAGAAATGGCTATTCTAGCTGCAAGTACAGC 137509 Query 70398 ATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTATCTAATTC 70457 |||||||||||| | |||| || || ||| | || ||||| || |||| | || Sbjct 137508 ATAGTCAGGATGGTCAATAGTCATTGTGGCAGCTGTCTCAGCAGCCAAGTTATCAAGCTC 137449 Query 70458 TATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCA 70498 | |||||| ||||| ||| || ||| ||||||||||| Sbjct 137448 AACAGTTGTCACTCCTGAATACAGACCTCCAATAACTTTCA 137408 >seq409 Length=488447 Score = 109 bits (120), Expect = 8e-19 Identities = 134/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 39887 TATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAAT 39946 ||||| || ||||| ||| |||||||| || || | ||||| || || || || || Sbjct 76213 TATGTGTCAATTAATAGAGAGTACATTTCAGAGTGAACATTTTCCATAGCTATTTGGAAC 76272 Query 39947 CCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTT 40006 || || || |||| || ||||||| ||| |||||| |||| | ||| | | |||| Sbjct 76273 CCATAGAAGAATCTGGCCTCAGTAACTTGAACCTCTTGTGAAAACCGCTCCACTAGATTT 76332 Query 40007 TCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTT 40066 ||||| || ||||||||| |||||||||||||| | || ||||| || |||| | | Sbjct 76333 TCATTGACAATTCCATCAGATGCGGCAAAAAATGCTAGAACGTGTTTTATGAAATGTCTC 76392 Query 40067 TCA 40069 ||| Sbjct 76393 TCA 76395 Score = 104 bits (114), Expect = 3e-17 Identities = 159/223 (71%), Gaps = 9/223 (4%) Strand=Plus/Plus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||| || | || ||| || || | |||||||| || |||||||| | Sbjct 75177 CCTCATCTCTTGATATAAGCTCATTACTGAAAGTCAAGCCAGGCATGAGTCCACGCTTCT 75236 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | | |||||| || | ||||||| || || || || || || ||||| |||||||||| Sbjct 75237 TTAACCAAAAGATAGAAGCAAAACTGCCTGAGAAAAAAATACCCTCTACAGCTGCAAATG 75296 Query 39759 CAACAAGTCTCTCTCCGTAACTTGTATCA-TTATG-----TATCCACTTCTGTGCCCAAT 39812 | | || | ||||| ||| || || || || ||||| | ||||||| | Sbjct 75297 CTATAATACGTTCTCC-AAAC--GTGGCAGTTTTGCTTGCAATCCATTGTAGTGCCCAGT 75353 Query 39813 CAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAA 39855 | || ||||| || |||||||||| ||||||||||||||||| Sbjct 75354 CCGCCTTCTTTTTAACACAAGGCAAAGTTTCTATAGCATTAAA 75396 Score = 96.9 bits (106), Expect = 5e-15 Identities = 90/113 (80%), Gaps = 1/113 (1%) Strand=Plus/Plus Query 40089 AGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCT 40148 ||||| || || |||| |||| ||| ||||||||| | |||||||| || || || || | Sbjct 76492 AGTCAATGTTACCTTT-GATAAATCCACTTCTTCAACAGTCCAAAAGGAAGCTTCGGCTT 76550 Query 40149 TTTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAATCTA 40201 |||||||||| | ||| ||||| |||| || || || || |||||||||||| Sbjct 76551 TTTTGTACATTTCCCAAATATCTGGATACTGGATAGGGAATATAACAAATCTA 76603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686562263096760