Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20nemesis_20[genbank_20GCA_5F002245505.1_202017-08-10] 40,359 sequences; 808,524,533 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq3626 98.7 7e-16 >seq3626 Length=201135 Score = 98.7 bits (108), Expect = 7e-16 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAA--AGC 27846 ||||||||||||||| |||||||| || || || ||||| | || || || | | Sbjct 59292 AATGCAAATTTTTGTTAAAACTCTCACAGGTAAGACGATTACCTTAGAAGTAGAGCCATC 59351 Query 27847 ACCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 | || || | || || || ||||| ||||||||||| | || ||| Sbjct 59352 AGATACTATCGAAAAC--GTAAAGGCGAAAATCCAAGACAAAGAAGGCATCCCTCCGGAC 59409 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 ||||||||| | |||||||| |||||||| |||| |||| ||| | | | || || ||| Sbjct 59410 CAGCAACGGCTCATTTTTGCTGGAAAACAGCTGGAAGACGGACGTACCCTTTCTGACTAC 59469 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||| ||||||||| |||| | || | ||| | ||| |||| || || Sbjct 59470 AACATTCAAAAAGAGTCCACTCTTCACCTTGTTCTCCGTCTGCGAGGTGG 59519 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||| || ||||||||||| || ||||| | || || ||| | Sbjct 59521 ATGCAGATCTTTGTTAAGACTCTTACTGGAAAGACCATTACTTTGGAAGTTGAACCTTCA 59580 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || | ||| |||||| ||||| ||||| ||||| | || || | Sbjct 59581 GACACAATTGAGAAT--GTCAAAGCCAAAATCCAGGACAAGGAAGGCATCCCTCCAGACC 59638 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | || || | || ||||| |||||||||||||| || | || | | |||| || |||| Sbjct 59639 AACAGCGACTCATCTTTGCTGGAAAACAATTGGAAGATGGGCGAACCCTGTCTGACTACA 59698 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| ||||||||| |||| | || | || ||||| |||| || || Sbjct 59699 ACATTCAAAAAGAGTCCACTCTTCACCTTGTACTGCGTCTGCGAGGTGG 59747 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAA--AGCA 27847 ||||| || ||||| || ||||||||||| || |||||| | || || ||| || Sbjct 59749 ATGCAGATCTTTGTCAAGACTCTTACTGGAAAGACTATTACTTTGGAAGTTGAACCTTCA 59808 Query 27848 CCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || || | ||| |||||| ||||| ||||| ||||| | || || | Sbjct 59809 GACACAATTGAGAAT--GTCAAAGCTAAAATCCAGGACAAGGAAGGCATCCCTCCAGACC 59866 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | || || | || ||||| ||||||||| |||| || | || | | |||| || |||| Sbjct 59867 AACAGCGACTCATCTTTGCTGGAAAACAACTGGAAGATGGGCGAACCCTGTCTGACTACA 59926 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| ||||||||| |||| | || | ||| | ||| |||| || || Sbjct 59927 ACATTCAAAAAGAGTCCACTCTTCACCTTGTTCTCCGTCTGCGAGGTGG 59975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355687360070793