Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20nemesis_20[genbank_20GCA_5F002245505.1_202017-08-10] 40,359 sequences; 808,524,533 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq3626 107 2e-18 seq4182 86.0 5e-12 >seq3626 Length=201135 Score = 107 bits (118), Expect = 2e-18 Identities = 176/253 (70%), Gaps = 2/253 (1%) Strand=Plus/Minus Query 39039 TAACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTT 39098 |||| ||||||| || || |||| ||||||||| ||||| || ||||| || || Sbjct 59308 TAACAAAAATTTG--CATTCCACCTCGTAAGCGTAATACCAAGTGAAGCGTAGATTCCTT 59251 Query 39099 TTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAG 39158 ||| || || ||||| | ||||| || | || ||||||||||| || || || ||||| Sbjct 59250 TTGAATGTTGTAATCAGAGAGTGTGCGCCCATCTTCAAGCTGTTTCCCTGCGAAGATAAG 59191 Query 39159 ACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCAC 39218 |||||||| |||| || | | ||||||||| ||||| ||| | | | | Sbjct 59190 TCGCTGCTGATCGGGAGGGATACCTTCTTTGTCCTGAATTTTAGCTTTTACATTTTCAAT 59131 Query 39219 CGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGAT 39278 ||||| | ||| || |||| || || ||||||| || || || || || || || Sbjct 59130 TGTATCCGATGGCTCAACCTCCAAGGTTATGGTTTTTCCAGTGAGTGTCTTCACGAATAT 59071 Query 39279 TTGCATCTTTACG 39291 ||||| ||| || Sbjct 59070 CTGCATTTTTCCG 59058 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || || ||| ||||||||| || || || || | ||| || ||| |||| || |||||| Sbjct 59495 TGAAGAGTGGACTCTTTTTGAATGTTGTAGTCAGAAAGGGTACGTCCGTCTTCCAGCTGT 59436 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 || || ||||| || || || |||||||| | || | || |||||||| ||||||| Sbjct 59435 TTTCCAGCAAAAATGAGCCGTTGCTGGTCCGGAGGGATGCCTTCTTTGTCTTGGATTTTC 59376 Query 39202 TGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTC 39261 || | | | | ||||| | ||| || || | || || | || || || Sbjct 59375 GCCTTTACGTTTTCGATAGTATCTGATGGCTCTACTTCTAAGGTAATCGTCTTACCTGTG 59316 Query 39262 AGCGTTTTAACAAAGATTTGCAT 39284 || ||||||||||| |||||||| Sbjct 59315 AGAGTTTTAACAAAAATTTGCAT 59293 >seq4182 Length=188933 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||||||||| | ||||| | ||||| ||| ||| || || ||||| || |||| Sbjct 74272 CCTCCTCTTAACCTCAACACAAGATGTAACGTAGACTCCTTCTGAATATTGTAGTCGGAT 74331 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 | ||| || | || || |||||||| || ||||| || | ||| ||||| || | || Sbjct 74332 AATGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAGATCAAACGTTGCTGATCCGGTGGA 74391 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | | ||||| || ||||| ||| | | | | |||||| | |||||| Sbjct 74392 ATACCTTCTTTATCTTGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGCCTCCACC 74451 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || | ||||| |||| ||||| || ||||| || || || ||||| Sbjct 74452 TCGAGGGTGATGGTTTTCCCCGTAAGGGTTTTTACGAATATCTGCAT 74498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429334317123767