Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20nemesis_20[genbank_20GCA_5F002245505.1_202017-08-10] 40,359 sequences; 808,524,533 total letters Query= NC_030240.1 Length=128058 Score E Sequences producing significant alignments: (Bits) Value seq4146 297 2e-75 seq2867 93.3 3e-14 >seq4146 Length=100757 Score = 297 bits (328), Expect = 2e-75 Identities = 596/878 (68%), Gaps = 13/878 (1%) Strand=Plus/Minus Query 109141 GCGTACTTTGTCGAATGGGGTGTGTACGGCCGCAATTTTCCCGTGGACAAAGTGCCGTTG 109200 || || ||||| || |||||||| ||| | || || || || || || || || | Sbjct 16622 GCTTATTTTGTGGAGTGGGGTGTTTACCCTAGAAAATTCCCAGTAGATAAGGTACCCATT 16563 Query 109201 CCCAATTTATCGCATTTGCTGTACGGTTTTATTCCAATATGTGGCGGCGACGGCATCAAC 109260 || ||| | | ||| | || ||||| ||||| || || |||||||| ||||| || ||| Sbjct 16562 CCAAATCTTACACATCTTCTTTACGGATTTATCCCCATCTGTGGCGGTGACGGAATTAAC 16503 Query 109261 GACGCCCTCAAAACCATTCCCGGCAGTTTTGACGCTTTGCAACGATCGTGCCGCGGTCGC 109320 ||| | ||| || || ||||| | ||||||||| |||| ||| |||| || Sbjct 16502 GACAGTTTAAAAGAAATCGAAGGAAGTTTCCAAGCTTTGCAAAGATCTTGCAGCGGGCGA 16443 Query 109321 GACGATTTCAAAGTGTCCATACACGACATTTGGGCCGCGGTGCAAAAACCGCAAAAAGGC 109380 || || |||||||| || || || ||| |||||| || | |||||||| || || || Sbjct 16442 GAGGACTTCAAAGTTTCTATCCATGACCCTTGGGCAGCTTTACAAAAACCACAGAAGGGT 16383 Query 109381 GTGACCGCGTGGAACGAGCCGTACAAAGGCAACTTTGGACAATTGATGGCGGCCAAATTG 109440 || || | |||||||| || ||||||||||||||||||||| ||||| | ||| Sbjct 16382 TTGTCCTCCTGGAACGAACCTTACAAAGGCAACTTTGGACAACTGATGTCTTTGAAACAA 16323 Query 109441 GCAAATCCTCACGTTAAAATTCTACCGTCCATAGGCGGGTGGACGTTGTCGGACCCGTTT 109500 || | ||| | | || |||| || || || || || ||||| || | || || || Sbjct 16322 GCTAGACCTGATTTGAAGGTTCTTCCATCAATCGGAGGCTGGACACTGGCAGATCCATTC 16263 Query 109501 TATTTTATGCACGATTCGGCGAAAAGAGCCACATTCGTTGAATCGGTGCGCGAATTTTTA 109560 || ||| | | ||| || ||||||| || || | ||| ||| || || | Sbjct 16262 TACTTTTTTGATGATAAGGTAAAAAGAGATCGTTTTGTGGCATCAGTGAAAGACTTCCTC 16203 Query 109561 CAAGTGTGGAAATTCTTTGACGGCGTCGACATTGATTGGGAGTTTCCGGGCGGCAAGGGT 109620 ||| ||||||||||| || || || ||||||||||||||||| || || || || ||| Sbjct 16202 CAAACTTGGAAATTCTTCGATGGTGTTGACATTGATTGGGAGTTCCCTGGTGGAAAAGGT 16143 Query 109621 GCCAATCCGAGTCTCGGCGACGCAACGCGCGACAGCAAAACGTACATTGCGTTGTTAAAA 109680 || ||||| | ||||| | ||| ||| | || ||| | | | | ||| Sbjct 16142 GCTAATCCTAACCTCGGTGGACCAA---ATGACGGTGAAGTTTACGTCCAGCTTATGAAA 16086 Query 109681 GAGTTGCGCGCCATGTTGGACGACTT----GCAAACGGCCACCAACAAAACGTACGAATT 109736 ||||| || | ||| || |||| || ||| | | | || ||| || ||| | Sbjct 16085 GAGTTACGTGAAATGCTGAACGAGTTATCCGCAGA-GACTGGTAAGAAA---TATGAACT 16030 Query 109737 GACGAGCGCCATTAGCGCCGGTTACGATAAAATTGACGTGGTCGATTACGCGTCGGCGCA 109796 ||| ||| ||||| || |||| |||||||| | || || || ||| | || || Sbjct 16029 GACATCCGCTATTAGTGCTGGTTGGGATAAAATCCAAGTAGTTGACTACAGGAAAGCTCA 15970 Query 109797 ACAATATTTGGACAAAATATTTTTAATGACATACGATTTCAAAGGCGCTTGGTCAAA-CA 109855 |||||| |||| | || || ||||||| ||||| || ||||| || |||||||| | Sbjct 15969 GCAATATATGGATCATATCTTCTTAATGAGTTACGACTTTAAAGGAGCGTGGTCAAATGA 15910 Query 109856 CGGACTTAGGCTATCACACGACTGTGTACGCGCCCACGTGGAATCCAAACGAATTGTACA 109915 | ||| || |||| || | ||||||| || | ||||||||||| ||| |||| Sbjct 15909 CACTCTT-GGACATCAAACACCGTTGTACGCACCTGCATGGAATCCAAAGGAAACCTACA 15851 Query 109916 CGACCGATGTGGCGGTCAAAGAGCTGTTCAAACAAAAAGTGTCGCCTaaaaaaaTTATAA 109975 | || || | | || ||| | || || ||| ||| ||||| || |||||| Sbjct 15850 CAACTGACTTTGGAGTTAAAAACCTCTTAGCCCAAGGAGTCAACCCTAAGAAGATTATAG 15791 Query 109976 TTGGCGTAGCGATGTACGGCCGCGGCTGGACGGGCGTC 110013 |||| ||||||||||| || || || ||||| || ||| Sbjct 15790 TTGGTGTAGCGATGTATGGTCGTGGTTGGACTGGAGTC 15753 >seq2867 Length=333652 Score = 93.3 bits (102), Expect = 3e-14 Identities = 102/134 (76%), Gaps = 4/134 (3%) Strand=Plus/Plus Query 103377 GTTGCCCAAATCGCCAACGTGTCTGACGAGCGCGTCGGGCGCGCCGTGCG--TTTCGCCG 103434 |||||||| ||| || |||||||||||| ||||| || ||||||||| | | |||| Sbjct 230855 GTTGCCCAGATCACCTACGTGTCTGACGGATGCGTCAGGGGCGCCGTGCTCCTGTTGCCG 230914 Query 103435 GTGGGATTAAAATGTTCGCCGGCCGACGTGCAGCCGTTGCTTGTGTCGCCAAACTCGTGC 103494 | ||||| || || | || ||||||||||||||||| | |||| |||||||| || Sbjct 230915 G--GGATTGAAGTGCGCCCCCGCCGACGTGCAGCCGTTTGTGTTGTCTCCAAACTCATGG 230972 Query 103495 ACGTGAAAACCGTG 103508 | ||| || || || Sbjct 230973 ATGTGGAACCCATG 230986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409459297965981