Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20nemesis_20[genbank_20GCA_5F002245505.1_202017-08-10] 40,359 sequences; 808,524,533 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq4459 726 0.0 seq409 102 1e-16 seq1404 91.5 2e-13 >seq4459 Length=154925 Score = 726 bits (804), Expect = 0.0 Identities = 1240/1781 (70%), Gaps = 28/1781 (2%) Strand=Plus/Minus Query 76773 TTATCCAATGTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACATACCA 76832 ||||| | |||||| || |||| | | ||| ||||||||||||| ||| ||||| || Sbjct 144009 TTATCTACTGTAAATTGGATTGCATTTGCTGCAGGTTTTGTACGTAAATAATACATGCCT 143950 Query 76833 GTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGA 76892 ||||||| ||||| |||| | || ||||| ||| |||||||| |||| | || Sbjct 143949 GTTTTTAAACCCATTTTCCAAGCATAAAAATGTATGGACGTCAGTTTACCATAATTTGGT 143890 Query 76893 TCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCC 76952 || |||| ||||||||| | ||||||||||| || || || || ||||||||||| ||| Sbjct 143889 TCAGCTACATGAATATTAAAAGACTGACTTTGGTCTATAAATGCACCTCTATCAGCAGCC 143830 Query 76953 ATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCA 77012 || | ||| | || || || ||||||||| | || || | | | | ||||||| Sbjct 143829 ATCTGAATAGTAGTTTTCACAGAAATTTCCCATACTGTCTTATACAAATCTCTGATATCT 143770 Query 77013 TCTGGAAG-GTTTG--TATTTTGAATGGAACCACCATC-TGATATAATTGTATTCTTTAT 77068 | |||| |||| |||| |||| |||||| || ||| | ||| ||| || || Sbjct 143769 TTGGGAATAGTTTCAATATTCTGAACTGAACCATTATTATGA-AGAATAAGATTTTTCAT 143711 Query 77069 ATCATCATTCCACAATT-TCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTAACTATTT 77127 ||||| | ||| || | | || | || ||| |||| | |||||| ||||||| | || Sbjct 143710 GTCATCGTCCCATAAATCTGCT-TGAGTCAAATCTCTTAAAAGATGATGATTAACGACTT 143652 Query 77128 GAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATT 77187 ||||||| || || ||||||| | ||| ||||| || ||||||| | |||| Sbjct 143651 GAAATTCGCCTGATAATACTCGTCTTTGGTATATATTTGAAGTGAATGGTTCAAAGGATT 143592 Query 77188 CATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTAT 77247 |||| || || | || ||||| ||||| || ||||||||||| |||| | | | || Sbjct 143591 CATTATTGCCAAGTATCTGAGCCGTAGATGCCGTTGGCATAGGCGCCAGTAGCAGAGAAT 143532 Query 77248 TTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAAG 77307 | | | |||||| | ||||| ||||| ||| ||||||||| ||||| | | Sbjct 143531 TACGAATTCCATGTTTAGCTATTTTTTCTTTAAGAGCAACCCAATCCCAGAGATCAGTGG 143472 Query 77308 GTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGATCCATTATATG 77367 | || ||| | ||| |||| | ||| || | ||| || || | ||||| Sbjct 143471 GAGTCTTATTCCACATATCAAATTGCAAAATCCCTTGGCTAACAGGACTACCTTCATATG 143412 Query 77368 TTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCGTAATAAA 77427 |||| ||| ||| | || |||| |||||| || |||||||| ||||||||||| | Sbjct 143411 AACTATAAACTCCCTCTTTCTCTGCTAATTCACAGCTAGCTTCCAAAGCTCCGTAATAGA 143352 Query 77428 TTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAACGGATAATGTA 77487 | || || || |||| | || | ||||| ||| ||| | || || | | Sbjct 143351 TAGTCTCAAATATCTGTTGGTTTAACAACAATGCTTTTTCACTTTCATAAGGGTAGCGCA 143292 Query 77488 AAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTAT 77547 || | ||||||||| ||||| || || ||||||||||| || |||||||||| | ||| Sbjct 143291 TCAGCACAAAGGCATCAGCTAAACCTTGGACTCCAATACCTATTGGTCTATGTCGCATAT 143232 Query 77548 TGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTATTGAGATTTC 77607 |||| ||||||||||||||| ||||||||||| | |||||||||||||| || ||| Sbjct 143231 TGGAGTTTTTAGCTTCTGGAACTGGATAATAATTGACATCTATAATTTTATTAAGGTTTT 143172 Query 77608 TAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAATCTTC---CATCTATAA 77664 | | ||| || || |||| || ||||| || ||| |||| | | Sbjct 143171 GTGTTATGATTTTTGTAACTTCTTTTAACTTTCCAAAATTGTATGTTCTATCATCATTTA 143112 Query 77665 CAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCAT-TAGCGTTGGCA 77723 ||||||| |||||||| ||||| |||| |||||| |||||||| |||| || | || | Sbjct 143111 CAAACATATTCAAAGCAATAGAAGCTAAATTACATACTGCTACTTCATCTACTGATGT-A 143053 Query 77724 TATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTG 77783 |||| || ||| || |||||||||||||||||||| || || || ||||||| || || Sbjct 143052 TATTCTACTATTTCTGTACATAGATTACTACATTTAATTGTTCCTAGATTTTTCTGATTA 142993 Query 77784 CTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGAT 77843 |||||| | || ||||| || || || | || || ||||| || ||||||| |||| | Sbjct 142992 CTCTTTCTGTTACATGAATCTTTGTATAACATGAATGGAGTGCCTGTTTCAACTTGTGCT 142933 Query 77844 TCGATAATAGATTTCCAGACGACTCTAGCTTTTATCATAGATTTG---TATCGCCTCTCT 77900 || | ||||| ||||| | ||| || ||| | | |||| ||| | || Sbjct 142932 TCTACAATAGCCTTCCATAAAACTTGTGCCCTTA-CTT--GTTTGACAAATCTTTTTTCA 142876 Query 77901 CTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGG 77960 | ||||| | ||| || |||||| || ||||||||| ||| |||| ||||| Sbjct 142875 TTCTCATACTTTTCATACAGAGCTTCAAACTCTTCTCCCCAACAATCTGCCAAACCAGGA 142816 Query 77961 CATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGA 78020 || |||| || |||||||| ||| | ||| || | ||||| ||||||||| | | Sbjct 142815 CAGTCATGGGGACACATCAAACTCCAATTTTCATTTTTTTCAACTCTTTTCATAAACAAA 142756 Query 78021 TCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTC 78080 || |||||||||| |||| ||| | || | | || | |||||| || || |||||| Sbjct 142755 TCTGGTATCCATAAAGCATAAAACAATTCCCTAGCTCGAACTTCTTCTTTGCCAGTATTC 142696 Query 78081 TTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATA 78140 ||||| ||||| | |||||| | | ||| |||||||||||||||| ||||| || | Sbjct 142695 TTTTTCAGATCTAAAAACTCAAACACATCTGAATGCCATGGTTCTAAATATACAGCAAAT 142636 Query 78141 ACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTC 78200 | || || || || ||||| || ||||||| ||||||||| ||| | ||||| ||||| Sbjct 142635 GCCCCTGGACGCTTGTTACCACCTTGATCTACATATCTGGCTGTGCTGTTATATACTCTT 142576 Query 78201 AACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCG 78260 |||||||| | || || || ||| |||||||| |||| ||| | | || | || Sbjct 142575 AACATTGGGACAAGTCCATTTGATACACCATTTGTGCCAGCTATACATGTACCTTTAGCT 142516 Query 78261 CGAATATTACTAATGGATAT----CCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCA 78316 | ||| | || | || ||| || || ||||| |||||||| | || || Sbjct 142515 CTGATA----CAGTGAACATGAAGCCCAATGCCACCTGCAGATTTAGATATCAAGGCACA 142460 Query 78317 ACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCAT-GTTAAGAAGAAAAC 78375 |||||| || || || || ||||| ||||||||||| |||| | || |||||| Sbjct 142459 TTGTTTCAGAGTGTCATATATTCCCTCAATACTGTCATCTTTCATGGCCAATAAGAAACA 142400 Query 78376 AGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAA 78435 || | |||| |||| | ||| | ||| |||||| || ||| || || || | Sbjct 142399 AGAT-GACAATTGAGGTCTTGGAGTAGCAGCAGAAAATAAAGTAGGACTGGCGTGAGTGA 142341 Query 78436 ACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAA 78495 | | || ||||| | || || || || | ||||||||| || ||||| | ||| | Sbjct 142340 AATACTTCTCAGACAATAAGTTATAGGTGTTAATAGCTGAATCAATGTCTTCTCCATGTA 142281 Query 78496 TTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCA 78536 |||| | ||||||||||| | |||||| || ||||| ||| Sbjct 142280 TTCCAATAGCTACACGCATTAGCATATGTTGTGGTCTCTCA 142240 Score = 102 bits (112), Expect = 1e-16 Identities = 120/161 (75%), Gaps = 1/161 (1%) Strand=Plus/Minus Query 78746 AAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTAGAATAGC 78805 |||| ||||||| ||||||||||||| |||||| | |||||||| || || || | ||| Sbjct 137567 AAAT-GTTTTTTGGTTTCCTTGTGTAAATTAGAAATGGCTATTCTAGCTGCAAGTACAGC 137509 Query 78806 ATAATCAGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTAAAATATCTAACTC 78865 ||| |||||||| | |||| ||||| ||| | || || || || |||| | ||| Sbjct 137508 ATAGTCAGGATGGTCAATAGTCATTGTGGCAGCTGTCTCAGCAGCCAAGTTATCAAGCTC 137449 Query 78866 TATAGTTGTGACCCCATTATATAGTCCTTGAATAACTTTCA 78906 | |||||| || || ||| || ||| ||||||||||| Sbjct 137448 AACAGTTGTCACTCCTGAATACAGACCTCCAATAACTTTCA 137408 Score = 86.0 bits (94), Expect = 9e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 78542 CTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 78601 ||| || |||||||| | |||||||||||||||||||| || || ||||||||||| || Sbjct 141270 CTTTTTGTTTATTTTTAGTAAGTATGATTTTTCCAAAGTCTTGAATCCAAAATAGTTATA 141211 Query 78602 TGAAAAGTCTCTCTCGTAAATAATAACAGAATTTAGTTTATCTTT 78646 | || ||||| || || | ||| |||||| | | ||||||| Sbjct 141210 TTTGAAATCTCTGTCATATACAATTGCAGAATCCAATCTATCTTT 141166 >seq409 Length=488447 Score = 102 bits (112), Expect = 1e-16 Identities = 132/182 (73%), Gaps = 3/182 (2%) Strand=Plus/Plus Query 48201 CCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAAT 48260 || ||||| |||||||| || || | |||||| || | || ||| || || || || Sbjct 75215 CCAGGCATGAGTCCACGCTTCTTTAACCAAAAGATAGAAGCAAAACTGCCTGAGAAAAAA 75274 Query 48261 ATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGT--- 48317 || || ||||| || |||||||| ||| | ||||| | |||| ||| | Sbjct 75275 ATACCCTCTACAGCTGCAAATGCTATAATACGTTCTCCAAACGTGGCAGTTTTGCTTGCA 75334 Query 48318 ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTA 48377 ||||| || ||||||| || |||||||| || |||||||||| ||||||||||||||| Sbjct 75335 ATCCATTGTAGTGCCCAGTCCGCCTTCTTTTTAACACAAGGCAAAGTTTCTATAGCATTA 75394 Query 48378 AA 48379 || Sbjct 75395 AA 75396 Score = 100 bits (110), Expect = 4e-16 Identities = 139/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 48391 TTTCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATAT 48450 |||| ||| ||| || ||| || || ||||| ||| |||||||| ||||||| || Sbjct 76193 TTTCTTTGGAATCACGAATGTATGTGTCAATTAATAGAGAGTACATTTCAGAGTGAACAT 76252 Query 48451 TTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTAC 48510 |||| || || || || || || || || |||| || || || | || ||||| Sbjct 76253 TTTCCATAGCTATTTGGAACCCATAGAAGAATCTGGCCTCAGTAACTTGAACCTCTTGTG 76312 Query 48511 AAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATA 48570 |||| || || | | ||| ||||| || ||||||||| || ||||||||||||| | Sbjct 76313 AAAACCGCTCCACTAGATTTTCATTGACAATTCCATCAGATGCGGCAAAAAATGCTAGAA 76372 Query 48571 CATGTTTAATAAAAT 48585 | ||||| || |||| Sbjct 76373 CGTGTTTTATGAAAT 76387 Score = 96.9 bits (106), Expect = 5e-15 Identities = 90/113 (80%), Gaps = 1/113 (1%) Strand=Plus/Plus Query 48613 AGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTT 48672 ||||| || || |||| |||| ||| ||||||||| | |||||||| || || || |||| Sbjct 76492 AGTCAATGTTACCTTT-GATAAATCCACTTCTTCAACAGTCCAAAAGGAAGCTTCGGCTT 76550 Query 48673 TTTTATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCTA 48725 |||| ||||| | ||| ||||| || ||||| ||||| |||||||||||| Sbjct 76551 TTTTGTACATTTCCCAAATATCTGGATACTGGATAGGGAATATAACAAATCTA 76603 >seq1404 Length=248339 Score = 91.5 bits (100), Expect = 2e-13 Identities = 139/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 45876 TCCAGTGGATCCAAATCCTTGAGCGTCTCTTTCAGTACCATCT-AGAGATTGC--ACTTC 45932 |||||| || ||||| ||| | | |||||| |||| ||| | |||||| ||||| Sbjct 176004 TCCAGTTGAACCAAACCCTCCATCTGCTCTTTTAGTA---TCTGAAAGATTGGCTACTTC 175948 Query 45933 CTTCAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCCGTATT 45992 | |||| || || || || || || | | ||||||||||| ||||||||||| | || Sbjct 175947 CATCAGCTCGGGGTAGTAAATTTTTTCACATATTAGTTGAGCAATTCTATCACCTTTTTT 175888 Query 45993 TATTTCAAATATATCTTTTCCATTATTGATCAGAATGACTCCAATTGTCCCTCTATAATC 46052 || | |||| ||| | | | ||||| | | ||||||| | ||||||||||| Sbjct 175887 TACTACAAAGTCATCATCTGAGTGATTGAATAATACAACTCCAACATTTCCTCTATAATC 175828 Query 46053 TTCATCTATTACTCC 46067 ||||||||| || || Sbjct 175827 TTCATCTATGACACC 175813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694318348273760