Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20nemesis_20[genbank_20GCA_5F002245505.1_202017-08-10] 40,359 sequences; 808,524,533 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq4459 670 0.0 seq409 105 1e-17 seq1404 95.1 2e-14 >seq4459 Length=154925 Score = 670 bits (742), Expect = 0.0 Identities = 1198/1741 (69%), Gaps = 16/1741 (1%) Strand=Plus/Minus Query 75397 TGCTGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAA 75456 ||| ||||||||||||| ||| ||||| || ||||||| ||||| |||| | || || Sbjct 143980 TGCAGGTTTTGTACGTAAATAATACATGCCTGTTTTTAAACCCATTTTCCAAGCATAAAA 143921 Query 75457 ATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATATTCATCGACTGACT 75516 ||| ||| || ||||| |||| | || || |||| ||||||||| | |||||||| Sbjct 143920 ATGTATGGACGTCAGTTTACCATAATTTGGTTCAGCTACATGAATATTAAAAGACTGACT 143861 Query 75517 TTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTC 75576 ||| || || || || ||||||||||| ||||| | ||| | || || || |||||| Sbjct 143860 TTGGTCTATAAATGCACCTCTATCAGCAGCCATCTGAATAGTAGTTTTCACAGAAATTTC 143801 Query 75577 CCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAGATTTG---TATTTTGAATGGA 75633 ||| | || || | | | | ||||||| | |||| | || |||| |||| || Sbjct 143800 CCATACTGTCTTATACAAATCTCTGATATCTTTGGGAATAGTTTCAATATTCTGAACTGA 143741 Query 75634 TCCGCCATCAGATATAATTGTATTCTTGATCTCATCATTCCACAATTTTCTCTCGGTTAA 75693 || || | | ||| ||| || || ||||| | ||| || | | | || || Sbjct 143740 ACCATTATTATGAAGAATAAGATTTTTCATGTCATCGTCCCATAAATCTGCTTGAGTCAA 143681 Query 75694 AACTCTAAGGAGATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTA 75753 | |||| | |||||| ||||||| | ||||||||| || || ||||||| || ||| Sbjct 143680 ATCTCTTAAAAGATGATGATTAACGACTTGAAATTCGCCTGATAATACTCGTCTTTGGTA 143621 Query 75754 AATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGC 75813 ||||| || ||||||| | |||||||| || || | || ||||| || || || Sbjct 143620 TATATTTGAAGTGAATGGTTCAAAGGATTCATTATTGCCAAGTATCTGAGCCGTAGATGC 143561 Query 75814 AGTCGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTT 75873 || |||||||| |||| | | | ||| | | |||||| | ||||| ||||| Sbjct 143560 CGTTGGCATAGGCGCCAGTAGCAGAGAATTACGAATTCCATGTTTAGCTATTTTTTCTTT 143501 Query 75874 TAGATATTTCCAATCCCAAAGATCTGATGGTACAACATCCCAGAGATCGTATTGTAGAAT 75933 ||| ||||||||| ||||| | || || ||| | ||| |||| | ||| Sbjct 143500 AAGAGCAACCCAATCCCAGAGATCAGTGGGAGTCTTATTCCACATATCAAATTGCAAAAT 143441 Query 75934 TCCGTTGCTAGCATATGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTC 75993 || | |||| || || | ||||| ||| || || || || |||| ||| Sbjct 143440 CCCTTGGCTAACAGGACTACCTTCATATGAACTATAAACTCCCTCTTTCTCTGCTAATTC 143381 Query 75994 GCAACTCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATT-AAGATCTT 76052 || || || || || || |||||||| || || || || |||| | || || | | Sbjct 143380 ACAGCTAGCTTCCAAAGCTCCGTAATAGATAGTCTCAAATATCTGTTGGTTTAACAACAA 143321 Query 76053 GCGCTTCAAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAA 76112 |||| ||| ||| |||| || | | || | ||| ||||| |||| || || | Sbjct 143320 T-GCTTTTTCACTTTCATAAGGGTAGCGCATCAGCACAAAGGCATCAGCTAAACCTTGGA 143262 Query 76113 CTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAAT 76172 |||||||||| || |||||||||| | ||||||| ||| ||||||||||| || |||| Sbjct 143261 CTCCAATACCTATTGGTCTATGTCGCATATTGGAGTTTTTAGCTTCTGGAACTGGATAAT 143202 Query 76173 AATTAATATCTATAATTTTATTGAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTT 76232 |||| | ||||||||||||||| || ||| | | ||| || || |||| | Sbjct 143201 AATTGACATCTATAATTTTATTAAGGTTTTGTGTTATGATTTTTGTAACTTCTTTTAACT 143142 Query 76233 TGAGAAAATCAAATTTTC---CATCTATCACAAACATATTAAGAGCTATAGATGCTAGAT 76289 | ||||| || ||| |||| | ||||||||||| | ||| ||||| |||| || Sbjct 143141 TTCCAAAATTGTATGTTCTATCATCATTTACAAACATATTCAAAGCAATAGAAGCTAAAT 143082 Query 76290 TACAAACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCATAGATTACTAC 76349 |||| || ||||| |||| | | ||||| || ||| || || ||||||||||||| Sbjct 143081 TACATACTGCTACTTCATCTACTGATGTATATTCTACTATTTCTGTACATAGATTACTAC 143022 Query 76350 ACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAA 76409 | || || ||||| ||||||| || || |||||| |||||||||| || || || | | Sbjct 143021 ATTTAATTGTTCCTAGATTTTTCTGATTACTCTTTCTGTTACATGAATCTTTGTATAACA 142962 Query 76410 CAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTT 76469 || ||||| || ||||||| |||| ||| | ||||| ||||| | ||| || Sbjct 142961 TGAATGGAGTGCCTGTTTCAACTTGTGCTTCTACAATAGCCTTCCATAAAACTTGTGCCC 142902 Query 76470 TTATTATAGATTTG---TATCGCTTCTCTCTTTCATATTGTGTATATAACCGTTCAAATT 76526 ||| | |||| ||| || || | ||||| | | ||| | |||||| | Sbjct 142901 TTACT---TGTTTGACAAATCTTTTTTCATTCTCATACTTTTCATACAGAGCTTCAAACT 142845 Query 76527 CATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGACCACTCAC 76586 | ||||||||| ||| ||||||||||||| |||| ||||||||||| ||| | Sbjct 142844 CTTCTCCCCAACAATCTGCCAAACCAGGACAGTCATGGGGACACATCAAACTCCAATTTT 142785 Query 76587 CATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTC 76646 ||| || | ||| | ||||||||| | ||| |||||||||| |||| ||| | || | Sbjct 142784 CATTTTTTTCAACTCTTTTCATAAACAAATCTGGTATCCATAAAGCATAAAACAATTCCC 142725 Query 76647 GGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAG 76706 | || | |||||| || || ||||||||||| ||||||| ||||| | | ||| | Sbjct 142724 TAGCTCGAACTTCTTCTTTGCCAGTATTCTTTTTCAGATCTAAAAACTCAAACACATCTG 142665 Query 76707 AATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTA 76766 ||||||||||||||| ||||| || | | || || || || ||||| || ||||||| Sbjct 142664 AATGCCATGGTTCTAAATATACAGCAAATGCCCCTGGACGCTTGTTACCACCTTGATCTA 142605 Query 76767 TATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCAT 76826 ||||||||| ||| | ||||| ||||| |||||||| | || || || ||| ||||| Sbjct 142604 CATATCTGGCTGTGCTGTTATATACTCTTAACATTGGGACAAGTCCATTTGATACACCAT 142545 Query 76827 TTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTC 76886 |||| |||| ||| | | || || | ||| || | || || || || | Sbjct 142544 TTGTGCCAGCTATACATGTACCTTTAGCTCTGATACAGTGAACATGAAGCCCAATGCCAC 142485 Query 76887 CTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTAT 76946 |||| |||||| || | ||||| |||||| |||||||| || ||||| ||||| | Sbjct 142484 CTGCAGATTTAGATATCAAGGCACATTGTTTCAGAGTGTCATATATTCCCTCAATACTGT 142425 Query 76947 CATCCATCAT-GTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTA 77005 |||| |||| | || |||||| || | |||| |||| | ||| | ||| | Sbjct 142424 CATCTTTCATGGCCAATAAGAAACAAGAT-GACAATTGAGGTCTTGGAGTAGCAGCAGAA 142366 Query 77006 AACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATA 77065 || || |||||| || |||||||| | || ||||| | || || || || | |||| Sbjct 142365 AATAAAGTAGGACTGGCGTGAGTGAAATACTTCTCAGACAATAAGTTATAGGTGTTAATA 142306 Query 77066 ACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGT 77125 ||| || || || | ||| ||||| | ||| |||||||| | |||||| || ||| Sbjct 142305 GCTGAATCAATGTCTTCTCCATGTATTCCAATAGCTACACGCATTAGCATATGTTGTGGT 142246 Query 77126 C 77126 | Sbjct 142245 C 142245 Score = 102 bits (112), Expect = 1e-16 Identities = 120/161 (75%), Gaps = 1/161 (1%) Strand=Plus/Minus Query 77341 AAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATTGC 77400 |||| ||||||| ||||||||||||| ||| || | |||||||||||| || || | || Sbjct 137567 AAAT-GTTTTTTGGTTTCCTTGTGTAAATTAGAAATGGCTATTCTAGCTGCAAGTACAGC 137509 Query 77401 ATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAATTC 77460 |||||||||||| | |||| ||||| ||| | || || || || |||| | || Sbjct 137508 ATAGTCAGGATGGTCAATAGTCATTGTGGCAGCTGTCTCAGCAGCCAAGTTATCAAGCTC 137449 Query 77461 TATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCA 77501 | ||| || ||||| ||| || ||| ||||||||||| Sbjct 137448 AACAGTTGTCACTCCTGAATACAGACCTCCAATAACTTTCA 137408 >seq409 Length=488447 Score = 105 bits (116), Expect = 1e-17 Identities = 134/182 (74%), Gaps = 3/182 (2%) Strand=Plus/Plus Query 46690 CCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAAT 46749 |||||||| ||||||||||| || | |||||| |||| || ||| || || || || Sbjct 75215 CCAGGCATGAGTCCACGCTTCTTTAACCAAAAGATAGAAGCAAAACTGCCTGAGAAAAAA 75274 Query 46750 ATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATT--ATG-A 46806 || || |||||||| || ||||| | || | ||||| | ||||| || || | Sbjct 75275 ATACCCTCTACAGCTGCAAATGCTATAATACGTTCTCCAAACGTGGCAGTTTTGCTTGCA 75334 Query 46807 ATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTA 46866 ||||| | | ||||| || ||||| || || |||||||||| ||||||||||||||| Sbjct 75335 ATCCATTGTAGTGCCCAGTCCGCCTTCTTTTTAACACAAGGCAAAGTTTCTATAGCATTA 75394 Query 46867 AA 46868 || Sbjct 75395 AA 75396 Score = 100 bits (110), Expect = 4e-16 Identities = 132/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 46900 TATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAAT 46959 ||||| || ||||| ||| |||||||| || |||| ||||| ||||| || || || Sbjct 76213 TATGTGTCAATTAATAGAGAGTACATTTCAGAGTGAACATTTTCCATAGCTATTTGGAAC 76272 Query 46960 CCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTC 47019 || || || |||| || ||||||| || |||||| |||| || || | ||| Sbjct 76273 CCATAGAAGAATCTGGCCTCAGTAACTTGAACCTCTTGTGAAAACCGCTCCACTAGATTT 76332 Query 47020 TCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTT 47079 ||||| || ||||||||| || ||||||||||| | || ||||| || |||| | | Sbjct 76333 TCATTGACAATTCCATCAGATGCGGCAAAAAATGCTAGAACGTGTTTTATGAAATGTCTC 76392 Query 47080 TCA 47082 ||| Sbjct 76393 TCA 76395 Score = 96.9 bits (106), Expect = 5e-15 Identities = 90/113 (80%), Gaps = 1/113 (1%) Strand=Plus/Plus Query 47102 AGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTT 47161 ||||| || || |||| |||| ||| ||||||||| | ||||| || || || || |||| Sbjct 76492 AGTCAATGTTACCTTT-GATAAATCCACTTCTTCAACAGTCCAAAAGGAAGCTTCGGCTT 76550 Query 47162 TTTTATACATATTCCATATATCACGATATTGGATCGGAAAAATAACAAATCTA 47214 |||| ||||| | ||| ||||| |||| ||||| || || |||||||||||| Sbjct 76551 TTTTGTACATTTCCCAAATATCTGGATACTGGATAGGGAATATAACAAATCTA 76603 >seq1404 Length=248339 Score = 95.1 bits (104), Expect = 2e-14 Identities = 142/199 (71%), Gaps = 6/199 (3%) Strand=Plus/Minus Query 44363 TCCCGTTGATCCAAATCCTTGAGCGTCTCTATTGGTACTATCT-AGAGATTG--TACTTC 44419 ||| ||||| ||||| ||| | | |||| || ||| ||| | |||||| |||||| Sbjct 176004 TCCAGTTGAACCAAACCCTCCATCTGCTCTTTTAGTA---TCTGAAAGATTGGCTACTTC 175948 Query 44420 CTCTAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCTGTATT 44479 | || || || || || || || | | ||||||||||| |||||||||||| | || Sbjct 175947 CATCAGCTCGGGGTAGTAAATTTTTTCACATATTAGTTGAGCAATTCTATCACCTTTTTT 175888 Query 44480 TATTTTAAAGGTATCTTTTCCATTATTGATCAAAATTACTCCAATGTTCCCCCTATAATC 44539 || | |||| ||| | | | ||||| || | ||||||| || || |||||||| Sbjct 175887 TACTACAAAGTCATCATCTGAGTGATTGAATAATACAACTCCAACATTTCCTCTATAATC 175828 Query 44540 TTCATCTATTACTCCACCT 44558 ||||||||| || ||| || Sbjct 175827 TTCATCTATGACACCAGCT 175809 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712574733506880