Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20nemesis_20[genbank_20GCA_5F002245505.1_202017-08-10] 40,359 sequences; 808,524,533 total letters Query= NC_031761.1 Length=131855 Score E Sequences producing significant alignments: (Bits) Value seq688 129 5e-25 seq2492 87.8 2e-12 >seq688 Length=109112 Score = 129 bits (142), Expect = 5e-25 Identities = 170/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 105005 TCCGAGTCTGCACGTTTAAAAACTTTTGAGGATTGGCCACTTAGTTTAAAACAAAGGCCA 105064 ||||| |||| ||| | || |||| |||||||| | ||| | ||||| ||| Sbjct 9616 TCCGAAGCTGCCCGTCTCCGTACATTTGTCGATTGGCCTCGCAGTATGCGACAAAAGCCT 9557 Query 105065 GAGCAATTGGCCGAAGCCGGTTTTTACTACACCGGCAAAGGTGATAAAGTCAAATGTTTT 105124 ||| | | |||||||| ||||| | |||||| || |||| || ||| ||||| ||| Sbjct 9556 GAGGAGCTAGCCGAAGCTGGTTTCTTCTACACTGGTCAAGGAGACAAAACGAAATGCTTT 9497 Query 105125 TATTGCGACGGCGGCCTTAAGGATTGGGCAAACGCCGACGAACCGTGGGAGGAACATGCA 105184 | || ||||| || | ||||| |||| ||| | ||| || |||||| |||||||| Sbjct 9496 TTCTGTGACGGTGGTTTGAAGGACTGGGAAAATGACGATATTCCCTGGGAGCAACATGCA 9437 Query 105185 CGTTGGTTTGATCGCTGTTCGTTCGTAAAACTGGTCAAAGGACACGACTACGTGCA 105240 |||||||| ||||| ||| | | ||| |||| |||||||||| || || || || Sbjct 9436 CGTTGGTTCGATCGATGTGCCTACGTCCAACTTGTCAAAGGACGAGAGTATGTACA 9381 Score = 105 bits (116), Expect = 6e-18 Identities = 100/128 (78%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 104735 AACGGGTTCTACTATTTGGGGCGCGCGGACGAAGTGCGCTGCGCGTTCTGCAAAGTGGAA 104794 ||||| ||||||||| | || || | || ||||||||||| || ||||||||||| ||| Sbjct 9877 AACGGATTCTACTATCTAGGCCGGGGCGATGAAGTGCGCTGTGCTTTCTGCAAAGTCGAA 9818 Query 104795 ATAATGCGCTGGTTGGAGGGCGACGACCCGGCCGTAGATCATAAACGATGGGCGCCACAG 104854 || ||| | ||| |||| || ||||| || || ||||||||| || | ||||| || || Sbjct 9817 ATCATGAGATGGGTGGAAGGGGACGATCCTGCTGTAGATCATCAAAGGTGGGCACCCCAA 9758 Query 104855 TGCCCGTT 104862 || || || Sbjct 9757 TGTCCATT 9750 >seq2492 Length=83244 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| ||||||||||| || ||||| |||||||||||||| | ||| || || Sbjct 41456 ATGCAGATTTTTGTCAAGACCTTGACTGGCAAAACCATTACTCTTGAAGTTGAGCCATCG 41397 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || || ||| | || || |||||| |||||||| || | || || || Sbjct 41396 GACACTATTGAAAATGTTAAGGCCAAAATTCAAGACAAAGAGGGTATCCCACCAGACCAG 41337 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTATA 111277 || ||||| || | ||| ||||| || | |||||| || | ||| | | || || | Sbjct 41336 CAGAGGCTCATCTTTGCCGGCAAGCAGCTTGAAGATGGTCGTACACTCT--CTGACTACA 41279 Query 111278 ATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 |||| ||||||||||| ||||| ||||| || || | || | ||||| Sbjct 41278 ATATCCAAAAAGAATCCACACTCCATTTGGTACTGAGATTGAGAGGTGG 41230 Score = 84.2 bits (92), Expect = 2e-11 Identities = 161/233 (69%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 111097 AAAATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCC 111156 || ||||| |||||||| || || | ||||||||||| |||||| | || ||||| Sbjct 41915 AACATGCAGATTTTTGTAAAGACCCTCACCGGCAAAACTATTACCCTAGAGGTAGAACCT 41856 Query 111157 AGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTC-GA 111215 || || ||| | ||||| ||||| |||||||| || | |||| | || Sbjct 41855 TCAGACACTATTGAAAATGTAAAGGCTAAAATCCAAGACAAAGAGGGTAT-CCCGCCAGA 41797 Query 111216 TCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGAT 111273 || || |||||||| | ||| || || || | |||||| || | ||| | | || Sbjct 41796 CCAGCAGAGGCTTATCTTTGCTGGTAAGCAGCTTGAAGATGGTCGCACACTCT--CTGAC 41739 Query 111274 TATAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || ||||| ||||||||||| ||||| ||||| || || | || | ||||| Sbjct 41738 TACAATATCCAAAAAGAATCCACACTCCATTTGGTACTGAGATTGAGAGGTGG 41686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421603721484184