Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20nemesis_20[genbank_20GCA_5F002245505.1_202017-08-10] 40,359 sequences; 808,524,533 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq3626 102 8e-17 seq4182 98.7 9e-16 seq2492 96.9 3e-15 >seq3626 Length=201135 Score = 102 bits (112), Expect = 8e-17 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || |||||||| |||| |||| ||| ||||| |||||||||||||| || Sbjct 60204 GCCACCTCGGAGACGTAATACCAAGTGCAAAGTGGATTCCTTTTGAATGTTATAGTCAGA 60145 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||| ||| | || || || ||||| || || || || || ||||||||||| | || Sbjct 60144 AAGGGTTCGCCCATCTTCCAGTTGCTTTCCAGCAAAGATAAGTCGCTGTTGGTCTGGAGG 60085 Query 41755 AACGCTCTCCTTGTCCATGATTTT 41778 | || ||||||||| |||||| Sbjct 60084 GATGCCTTCCTTGTCCTGGATTTT 60061 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || || || || ||| ||| || |||||||| ||||| || Sbjct 59975 CCACCTCGCAGACGGAGAACAAGGTGAAGAGTGGACTCTTTTTGAATGTTGTAGTCAGAC 59916 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| ||| | || || || || || || || || || || ||||||||||| | || Sbjct 59915 AGGGTTCGCCCATCTTCCAGTTGTTTTCCAGCAAAGATGAGTCGCTGTTGGTCTGGAGGG 59856 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAAC-GACGACACAGTGTCGCTCGACTCCAC 41814 | || ||||||||| || |||| |||| || | | ||||| | || || Sbjct 59855 ATGCCTTCCTTGTCC-TGGATTTTAGCTTTGACATTCTCAATTGTGTCTGAAGGTTCAAC 59797 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || || || || || || || ||||| || || |||||||| Sbjct 59796 TTCCAAAGTAATAGTCTTTCCAGTAAGAGTCTTGACAAAGATCTGCAT 59749 >seq4182 Length=188933 Score = 98.7 bits (108), Expect = 9e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 41651 AACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCG 41710 ||||| ||||| | ||| |||||||||||| || |||||||| | ||||| | || Sbjct 74287 AACACAAGATGTAACGTAGACTCCTTCTGAATATTGTAGTCGGATAATGTGCGGCCATCT 74346 Query 41711 TCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCC 41770 || ||||| || || || || |||| || || || |||| |||| | || ||| | Sbjct 74347 TCCAGCTGTTTACCAGCAAAGATCAAACGTTGCTGATCCGGTGGAATAC-CTTCTTTATC 74405 Query 41771 ATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGT 41829 ||| |||| |||| || | | ||| ||| | ||||||||| | || || || Sbjct 74406 TTGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGCCTCCACCTCGAGGGTGATGGT 74465 Query 41830 TTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| ||||| || || |||||||| |||||||| Sbjct 74466 TTTCCCCGTAAGGGTTTTTACGAATATCTGCAT 74498 >seq2492 Length=83244 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 |||| ||| || ||| || ||||| || || ||||| ||||| ||||| | || || Sbjct 40336 ACCAAATGGAGTGTGGATTCTTTCTGGATATTGTAGTCCGAGAGTGTGCGACCATCTTCA 40395 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 |||||||||||||| || || || | ||| ||||| | || | | ||| |||| | || Sbjct 40396 AGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCTGGTGGGATACCCTCTTTGT-CTTG 40454 Query 41774 ATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832 |||| || | ||| | | |||||| | ||| || || | || || ||||| Sbjct 40455 GATTTTGGCCTTAACATTTTCAATAGTGTCTGATGGCTCAACTTCAAGAGTGATGGTTTT 40514 Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || |||| |||||||||||||||||||| Sbjct 40515 GCCAGTCAAGGTCTTTACGAAAATCTGCAT 40544 Score = 93.3 bits (102), Expect = 4e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 |||| ||| || ||| || ||||| || || ||||| ||||| ||||| | || || Sbjct 41476 ACCAAATGGAGTGTGGATTCTTTCTGGATATTGTAGTCCGAGAGTGTGCGGCCATCTTCA 41535 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 |||||||||||||| || || || | ||| ||||| | || | | ||| |||| | || Sbjct 41536 AGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCTGGTGGGATACCCTCTTTGT-CTTG 41594 Query 41774 ATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832 | |||| |||| ||| | | ||||| | ||| || || | || || ||||| Sbjct 41595 AATTTTGGCTTTAACATTTTCAATGGTGTCTGATGGCTCAACTTCAAGTGTGATGGTTTT 41654 Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || | ||||| |||||||||||||| Sbjct 41655 GCCAGTTAAGGTCTTGACGAAAATCTGCAT 41684 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 |||| ||| || ||| || || || || || ||||| ||||| ||||| | || || Sbjct 40564 ACCAAATGGAGTGTGGATTCTTTTTGGATATTGTAGTCCGAGAGTGTGCGGCCATCTTCA 40623 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 |||||||||||||| || || || | ||| ||||| | || | | ||| |||| | || Sbjct 40624 AGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCTGGTGGGATACCCTCTTTGT-CTTG 40682 Query 41774 ATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832 |||| || | ||| | | |||||| | ||| || || | || || ||||| Sbjct 40683 GATTTTGGCCTTAACATTTTCAATAGTGTCTGAAGGCTCAACTTCAAGAGTGATGGTTTT 40742 Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || |||| ||||| |||||||||||||| Sbjct 40743 GCCAGTCAAGGTCTTGACGAAAATCTGCAT 40772 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 |||| ||| || ||| || || || || || ||||| ||||| ||||| | || || Sbjct 41020 ACCAAATGGAGTGTGGATTCTTTTTGGATATTGTAGTCTGAGAGTGTGCGACCATCTTCA 41079 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 |||||||||||||| || || || | ||| ||||| | || | | ||| |||| | || Sbjct 41080 AGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCTGGTGGGATACCCTCTTTGT-CTTG 41138 Query 41774 ATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832 |||| || | ||| | | |||||| | ||| || || | || || ||||| Sbjct 41139 GATTTTGGCCTTAACATTTTCAATAGTGTCTGATGGCTCAACTTCAAGAGTGATGGTTTT 41198 Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || |||| ||||| |||||||||||||| Sbjct 41199 GCCAGTCAAGGTCTTGACGAAAATCTGCAT 41228 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 |||| ||| || ||| || || || || || ||||| ||||| ||||| | || || Sbjct 40792 ACCAAATGGAGTGTGGATTCTTTTTGGATATTGTAGTCCGAGAGTGTGCGACCATCTTCA 40851 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 |||||||| ||||| || || || | ||| ||||| | || | | ||| ||||| | Sbjct 40852 AGCTGCTTTCCGGCAAAGATGAGCCTCTGCTGGTCTGGTGGGATACCCTCTTTGTCTTGG 40911 Query 41774 ATTTTTTGCTTCAACGACGACAC-AGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832 ||||| ||| ||| || |||||| | ||| || || | || || ||||| Sbjct 40912 ATTTTGGCCTT-AACATTTTCAATAGTGTCCGATGGCTCAACTTCAAGTGTGATGGTTTT 40970 Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || | |||||||||||||||||||| Sbjct 40971 GCCAGTTAAGGTCTTTACGAAAATCTGCAT 41000 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 |||| ||| || ||| || || || || || ||||| ||||| || || | || || Sbjct 41248 ACCAAATGGAGTGTGGATTCTTTTTGGATATTGTAGTCAGAGAGTGTACGACCATCTTCA 41307 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 |||||||||||||| || || || | ||| ||||| | || | | ||| |||| | || Sbjct 41308 AGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCTGGTGGGATACCCTCTTTGT-CTTG 41366 Query 41774 ATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832 | |||| || | ||| | | |||||| | ||| || || | || || ||||| Sbjct 41367 AATTTTGGCCTTAACATTTTCAATAGTGTCCGATGGCTCAACTTCAAGAGTAATGGTTTT 41426 Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || |||| ||||| || ||||||||||| Sbjct 41427 GCCAGTCAAGGTCTTGACAAAAATCTGCAT 41456 Score = 84.2 bits (92), Expect = 2e-11 Identities = 149/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 |||| ||| || ||| || || || || || ||||| ||||| ||||| | || || Sbjct 41704 ACCAAATGGAGTGTGGATTCTTTTTGGATATTGTAGTCAGAGAGTGTGCGACCATCTTCA 41763 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCG-CGGGA-ACGCTCTCCTTGTCCA 41771 |||||||| || || || || || | ||| ||||| | ||||| || |||| ||||| Sbjct 41764 AGCTGCTTACCAGCAAAGATAAGCCTCTGCTGGTCTGGCGGGATACCCTCT--TTGTCTT 41821 Query 41772 TGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTT 41831 |||||| ||| | | |||||| | || ||||| | || || |||| Sbjct 41822 GGATTTTAGCCTTTACATTTTCAATAGTGTCTGAAGGTTCTACCTCTAGGGTAATAGTTT 41881 Query 41832 TACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 | || || || |||||||| |||||||||||||| Sbjct 41882 TGCCGGTGAGGGTCTTTACAAAAATCTGCATGTT 41915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462070773410800