Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value SEQ17521 600 1e-166 SEQ58105 102 1e-16 seq5442 82.4 9e-11 >SEQ17521 Length=26855 Score = 600 bits (664), Expect = 1e-166 Identities = 1205/1777 (68%), Gaps = 20/1777 (1%) Strand=Plus/Minus Query 52799 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 52858 || || | ||| ||||| || | | | ||| ||||| ||||||| ||| ||||| || Sbjct 4001 TTATCTACTGTAAATTGGATTGCATTTGCTGCAGGTTTGGTACGTAAATAATACATGCCT 3942 Query 52859 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGA 52918 ||||||||||| | |||| | |||||||| || || ||||| |||| | || Sbjct 3941 GTTTTTAGACCCATTTTCCACGCATAAAAATGTATGGACGTCAGTTTACCATAATTTGGT 3882 Query 52919 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 52978 || |||| |||||| || | ||| |||||||| || || || || || || || |||||| Sbjct 3881 TCAGCTACATGGATGTTAAAAGACTGACTTTGGTCTATAAATGCACCTCTATCAGCAGCC 3822 Query 52979 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATC 53037 || | || | || || | ||||||||| | || ||||| || || || |||||| Sbjct 3821 ATCTGAATAGTAGTTTTCACAGAAATTTCCCATACTGTCTTATACAAATCTCT-AATATC 3763 Query 53038 TTCTGGAAG-GTTTG--TATTCTGAATAGATCCACCATCTACCATAATCCTATTCTTGAT 53094 || |||| | || ||||||||| || ||| || | ||| ||| || || Sbjct 3762 TTTGGGAATAGATTCAATATTCTGAACTGAACCATTATTATGAAGAATAAGATTTTTCAT 3703 Query 53095 CTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTG 53154 ||||| | ||| || | | | || ||| |||| | ||||| | || || ||||| Sbjct 3702 GTCATCGTCCCACAAATCTGCTTGAGTCAAATCTCTCAAAAGATGATGGTTCACAACTTG 3643 Query 53155 AAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTC 53214 ||||||||| || ||||||| | ||| ||||| ||| | ||||| | || || Sbjct 3642 AAATTCTCCTGATAATACTCGTCTTTGGTATATATTTGAAGTAAATGGTTCAAAGGATTC 3583 Query 53215 ATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATT 53274 |||||| || | || || || || ||||| || |||||||| |||| | | | ||| Sbjct 3582 ATTATTGCCAAGTATCTGTGCCGTAGATGCCGTTGGCATAGGCGCCAGTAGCAGAGAATT 3523 Query 53275 TCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGAC 53332 | || || ||||| | ||||| ||||| |||| |||||| ||| ||||| | Sbjct 3522 ACGAATTCC--ATGTTTAGCTATTTTTTCTTTAAGAGCAACCCAATCCCAGAGATCAGTG 3465 Query 53333 GGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCTACATA 53391 || ||| | ||| || | || | | || | ||| |||| Sbjct 3464 GGCGTCTTATTCCACATATCAAATTGCAAAATCCCTTGGCTAACAGGACTA-CCTTCATA 3406 Query 53392 TGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATA 53451 || | || ||| || ||||| |||| |||||| || || || || || |||||||| Sbjct 3405 TGAACTATAAACTCCCTCTTTCTCCGCTAATTCACAGCTAGCTTCCAAAGCTCCGTAATA 3346 Query 53452 AATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATT 53511 || || || || |||| | |||| ||||| || ||| | || || Sbjct 3345 GATAGTCTCAAATATCTGTTGGTTTAACAACAATGCTTTTTCACTTTCATAAGGGTAGCG 3286 Query 53512 TAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTT 53571 | || | ||| || || ||||| ||||| || |||||||| || |||||||||| | | Sbjct 3285 CATCAGCACAAAGGCATCAGCTAAACCTTGGACTCCAATACCTATTGGTCTATGTCGCAT 3226 Query 53572 ATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTT 53631 ||| ||| ||| ||||||||||| ||||||||||| | ||||||||||||||| ||||| Sbjct 3225 ATTGGAGTTTTTAGCTTCTGGAACTGGATAATAATTGACATCTATAATTTTATTTAGGTT 3166 Query 53632 TCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATTGTC---CATCTAT 53688 | | || | ||| || || || | || ||||| | || |||| | Sbjct 3165 TTGGGTTATAATTTTTGTAACTTCTTTTAACTTTTCAAAATTGTACGTTCTATCATCATT 3106 Query 53689 TACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGC 53748 ||||||||| ||||| |||||||| || | |||||| || ||||| |||| | | Sbjct 3105 TACAAACATATTCAAAGCAATAGAAGCTAAATTACATACTGCTACTTCATCTACTGATGT 3046 Query 53749 ATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATT 53808 |||| || ||| || || || ||||||||||| || || ||||||| ||||| ||||| Sbjct 3045 GTATTCTACTATTTCTGTACATAGATTACTACATTTAATTGTTCCTAGATTTTTCTGATT 2986 Query 53809 ACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGA 53868 ||||||| ||||||| | ||| || || | |||||||| || || ||||||| || | Sbjct 2985 ACTCTTTCTGTTACATGAATCTTTGTATAACATGAATGGAGTGCCTGTTTCAACTTGTGC 2926 Query 53869 TTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATCTCTTTTCTCT 53928 ||||| ||| || ||||| | || | || |||| | | || | |||||| || Sbjct 2925 TTCTACAATAGCCTTCCATAAAACTTGTGCTTTTACTT--GTTTAACAAATCTTTTTTCA 2868 Query 53929 TTCGTATAGTGTATACAATCG--TTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGA 53986 ||| ||| | | | || | ||||||||| ||||||||| || |||| |||||| Sbjct 2867 TTCTCATACTTTTCATAAAGGGCTTCAAACTCTTCTCCCCAACAATCTGCCAAACCAGGA 2808 Query 53987 CATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGA 54046 || |||| ||||||||||| ||| | | | | | | |||| ||||||||| | | Sbjct 2807 CAGTCATGGGGACACATCAAACTCCAATTTTCATTTTTTTCAACTCTTTTCATAAACAAA 2748 Query 54047 TCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTC 54106 || || ||||| | ||| ||| | || || | || | ||| || || || |||||| Sbjct 2747 TCTGGTATCCATAAAGCATAAAACAATTCCCTAGCTCGAACTTCTTCTTTACCAGTATTC 2688 Query 54107 TTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATA 54166 ||||| ||||| | ||| | | | ||| |||||||| ||||| || |||| | | Sbjct 2687 TTTTTCAGATCTAAAAACTCAAACACATCTGAATGCCATGGTTCTAAATATACAGCAAAT 2628 Query 54167 ACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTC 54226 | || || || ||||| || || ||||||| ||||| || ||| | ||||| ||||| Sbjct 2627 GCCCCTGGACGCTTGTTACCACCTTGATCTACATATCTGGCTGTGCTGTTATATACTCTT 2568 Query 54227 AACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCA 54286 |||||||| | || ||||| ||| ||||||| || || | ||| | | || | || Sbjct 2567 AACATTGGGACAAGTCCATTTGATACACCATTTGTGCCAGCTATACATGTACCTTTAGCT 2508 Query 54287 CGAATATTACTAA-TTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCG 54345 || ||| || ||| || || || || ||||| |||||| || || || ||| | Sbjct 2507 CGGATACAGTGAACATGA-AGCCCAATGCCACCTGCAGATTTAGATATCAAGGCACATTG 2449 Query 54346 TTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 54405 ||| | || ||||| || ||||| ||||| ||||| ||||| | || ||||| Sbjct 2448 TTTCAGAGTGTCATATATTCCCTCAATACTGTCATCTTTCATGGCCAATAAGAAACAAGA 2389 Query 54406 AGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCA 54465 |||| ||| | | ||| | ||| |||||| |||||| ||||| || || | Sbjct 2388 TGACAATTGAGGTCTTGGAGTAGCAGCAGAAAATAAAGTAGGACTGGCGTGAGTGAAATA 2329 Query 54466 TTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCC 54525 || ||||| | || |||||| || | || ||||| || || || | ||| || || Sbjct 2328 CTTCTCAGACAATAAATTGTAGGTGTTAATTGCTGAATCAATGTCTTCTCCATGTATACC 2269 Query 54526 TACTGCGACACGCATTAACATGTGCTGAGGTCTTTCA 54562 | || |||||||||| ||| || || ||||| ||| Sbjct 2268 AATAGCTACACGCATTAGCATATGTTGTGGTCTCTCA 2232 >SEQ58105 Length=99015 Score = 102 bits (112), Expect = 1e-16 Identities = 133/182 (73%), Gaps = 3/182 (2%) Strand=Plus/Minus Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 24254 || ||||| || |||||||| || | |||||| || || ||||| || || || ||| Sbjct 17281 CCAGGCATGAGTCCACGCTTCTTTAACCAAAAGATAGAAGCAAAACTGCCTGAGAAAAAA 17222 Query 24255 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGT--CATGTA 24312 || || ||||| || ||||| || | || | ||||||| | || | | | || | Sbjct 17221 ATACCCTCTACCGCTGCAAATGCTACAATACGTTCTCCAAATGTTGCAGTTTTGCTTGCA 17162 Query 24313 -TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTA 24371 |||| | | | ||||| || ||||||||||| |||||||||| || |||||||||||| Sbjct 17161 ATCCATTGTAGGGCCCAGTCTGCCTTCTTTTTAACACAAGGCAAAGTTTCTATAGCATTA 17102 Query 24372 AA 24373 || Sbjct 17101 AA 17100 Score = 93.3 bits (102), Expect = 5e-14 Identities = 88/111 (79%), Gaps = 1/111 (1%) Strand=Plus/Minus Query 24609 TCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 24668 ||| || || |||| |||| |||||||||||| || |||||||| || || || || ||| Sbjct 16179 TCAATGTTACCTTT-GATAAATCCACTTCTTCAACAGTCCAAAAGGAAGCTTCGGCTTTT 16121 Query 24669 TTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTA 24719 || ||||| | ||| || || |||| || || ||||| |||||||||||| Sbjct 16120 TTGTACATTTCCCAAATATCTGGATACTGGATAGGAAATATAACAAATCTA 16070 >seq5442 Length=246257 Score = 82.4 bits (90), Expect = 9e-11 Identities = 139/196 (71%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 21883 TCCGGTTGATCCAAACCCTTGATCTCCTCTATCTGTACTATCT-AGAGATTG--TACTTC 21939 ||| ||||| ||||||||| |||| |||| | || ||||| | |||||| |||||| Sbjct 104773 TCCTGTTGAACCAAACCCTCCATCTGCTCTTT---TAGTATCTGAAAGATTGGCTACTTC 104829 Query 21940 TTTCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCCCCCGTATT 21999 |||| || || || || || || | | ||||| ||||| |||||||| || | || Sbjct 104830 CATCAGCTCGGGGTAGTAAATTTTTTCACATATTAGTTGAGCAATTCTATCACCTTTTTT 104889 Query 22000 TACATTAAATGTATATTTTCCATTATT-AATAAGAATGACTCCTATATTTCCCCTATAAT 22058 || ||| || | | | ||| ||||| | ||||| | |||||| ||||||| Sbjct 104890 AACCACAAAGTCATCATCTGAGTGATTGAATAATACA-ACTCCAACATTTCCTCTATAAT 104948 Query 22059 CTTCGTCTATTACACC 22074 |||| ||||| ||||| Sbjct 104949 CTTCATCTATGACACC 104964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593223178138320