Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value SEQ21942 273 2e-68 seq2773 116 3e-21 SEQ58356 105 6e-18 seq4618 100 2e-16 >SEQ21942 Length=42535 Score = 273 bits (302), Expect = 2e-68 Identities = 501/730 (69%), Gaps = 13/730 (2%) Strand=Plus/Minus Query 105772 TTTGACCAAGCCCCTTTAAAATCGTAACTCATGAGAAATATTTTGCCTAATGACTTTTGC 105831 |||||||| || |||||||| ||||||||||| | ||| || | | | | | || Sbjct 35316 TTTGACCACGCTCCTTTAAAGTCGTAACTCATTAAAAAGATATGATCCATATATTGCTGA 35257 Query 105832 GCTTCGGCGTAGTTTACCACGGCAATCTTGTCGTAACCCGCGCTTATAGCGCTTGTTAAT 105891 |||| ||| | || || ||||| || |||| || || |||||| ||| | | Sbjct 35256 GCTTTCCTGTAATCAACTACTTGGATCTTATCCCAACCAGCACTAATAGCGGATGTCAGT 35197 Query 105892 TCGTAAACCCTGCCGGTTTGCGCTTCGAGGTCGTCTAGCATTGCGCGCAGCTCCTCCAAC 105951 || || | | ||||| | || || |||| |||||| | || | ||| | || | Sbjct 35196 TCATATTTCTTACCGGTCTCCGTGGATAGCTCGTTCAGCATTTCACGTAACTCTTTCATC 35137 Query 105952 AACAAAATGTATGTTTTGGCGTCACCGTCCGCATCGCCCAACGACG----GGTTAGCCCC 106007 | | | || || ||||||| | | ||| ||| | | ||||| || Sbjct 35136 AGCTGGACATAAACTT------CACCGTCATT-TGGTCCACCGAGGTTAGGATTAGCACC 35084 Query 106008 TTTGCCGCCCGGAAACTCCCAATCGATGTCTACACCGTCAAAGAATTTCCACACTTGCAG 106067 ||| || || || ||||||||||| ||||| |||||||| ||||||||||| ||| || Sbjct 35083 TTTTCCACCAGGGAACTCCCAATCAATGTCAACACCGTCGAAGAATTTCCAAGTTTGGAG 35024 Query 106068 AAATTCCTTAACCGAATCTACAAAAACGTTTCTTTTTTCAACATCGTGCATAAAATAAAA 106127 || || || || || | |||||| | ||||||| | ||| | | || || || Sbjct 35023 GAAGTCTTTCACTGATGCCACAAAACGATCTCTTTTTACCTTATCATCAAAGAAGTAGAA 34964 Query 106128 TGGGTCTGATAGAGTCCAGCCTCCTATTGAAGGAAGAATTTTTAAATGGGGGTTTGCTAA 106187 ||| |||| | |||||||| || ||||| ||||||| || | || || | ||| Sbjct 34963 TGGATCTGCCAATGTCCAGCCCCCGATTGATGGAAGAACCTTCAGATCAGGTCTAGCTTG 34904 Query 106188 TTTTGCCGCCATCAACTGTCCAAAATTGCCTTTATACGGCTCGTTCCAAGCGGACACACC 106247 |||| | ||||| |||||||| |||||||| || || |||||||| | ||||| ||| Sbjct 34903 TTTTAAAGACATCAGTTGTCCAAAGTTGCCTTTGTAAGGTTCGTTCCAGGAGGACAAACC 34844 Query 106248 TTTTTGGGGTTTTTGTACGGCGGCCCACGGATCGTGAATGGCAACTTTGAAATCTTCGCG 106307 || || |||||||||| || ||||| || ||||| || | ||||||||| || || || Sbjct 34843 CTTCTGTGGTTTTTGTAAAGCTGCCCAAGGGTCGTGGATAGAAACTTTGAAGTCCTCTCG 34784 Query 106308 TCCCTTGCACGATCTTTGCAAAGATTCAAAGCTTCCGGGTATCGTTTTGAGGGCGTCGTT 106367 || |||| |||| |||||||| || || ||||| || ||| | |||||| Sbjct 34783 CCCGCTGCAAGATCGTTGCAAAGCTTGGAAACTTCCTTCGATTTCTTTCAAACTGTCGTT 34724 Query 106368 TATTCCATCGCCGCCGCAGATGGGTATGAAACCATACAACAAG-TGTGATAAATTTGGCA 106426 ||||| || ||||| |||||||| || || || || || ||| |||| | ||| || | Sbjct 34723 AATTCCGTCACCGCCACAGATGGGGATAAATCCGTA-AAGAAGATGTGTAAGATTCGGAA 34665 Query 106427 AGGGAACTTTGTCTACGGGAAAGTTGCGCCCGTACACACCCCACTCAACAAAGTACGCAG 106486 ||| || || ||||| || || || | ||| ||||||||||| ||||| || || Sbjct 34664 TGGGTACCTTATCTACTGGGAATTTTCTAGGGTAAACACCCCACTCCACAAAATAAGCTC 34605 Query 106487 CGACAATTTT 106496 |||| | ||| Sbjct 34604 CGACGACTTT 34595 >seq2773 Length=85211 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || | |||||| |||| ||||| || ||||| ||| ||||| || Sbjct 66622 ATGCAAATTTTTGTGAAAACACTGACAGGCAAGACTATTACTTTGGAAGTTGAACCTTCA 66681 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || |||| ||||| || || ||||| | || ||| ||| Sbjct 66682 GATACAATTGAGAATGTTAAAGCCAAAATCCAGGACAAGGAAGGCATCCCTCCAGACCAA 66741 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || |||| |||||||| || |||||||| |||||| || || | |||||||| Sbjct 66742 CAGCGACTCATCTTTGCTGGAAAACAACTAGAAGATGGGCGTACACTGTCTGATTACAAC 66801 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||| ||||||||||| |||||| |||| ||||| |||||||| || Sbjct 66802 ATTCAAAAGGAATCTACGCTTCACTTGGTATTACGCTTACGAGGTGG 66848 Score = 102 bits (112), Expect = 7e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 28958 AAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACC 29017 ||||||||| ||||| | || ||| | || || |||||||| ||| || || || Sbjct 66162 AAAAATGCAGATATTTGTGAAGACACTCACTGGAAAAACCATAACCTTGGAGGTTGAGCC 66221 Query 29018 CGCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGA 29077 | || || | | || | || |||||| || ||||||||| | || || Sbjct 66222 ATCGGATACAATTGAAAATGTAAAAGCTAAAATTCAGGACAAAGAAGGTATCCCTCCCGA 66281 Query 29078 TCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTA 29137 ||| || | |||||||| || || ||||| || |||||| || || | ||||| Sbjct 66282 TCAGCAGCGTCTTATCTTCGCAGGGAAACAGCTTGAAGATGGGCGTACACTGTCTGATTA 66341 Query 29138 CAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||| ||||| ||||||||||| |||||| |||| ||||| |||||||| || Sbjct 66342 CAACATTCAAAAGGAATCTACGCTTCACTTGGTATTACGCTTACGAGGTGG 66392 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || | |||||| | |||||||| |||||||| ||| ||||| | Sbjct 67078 ATGCAAATTTTTGTGAAAACACTAACGGGCAAGACCATTACTTTGGAAGTTGAACCTTCG 67137 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | || ||||| ||||| ||||| | || ||| ||| Sbjct 67138 GACACAATTGAGAATGTCAAAGCCAAAATCCAGGATAAGGAAGGCATCCCTCCAGACCAA 67197 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || ||||||||||||| || || |||||||||||| ||| || | || |||||| Sbjct 67198 CAGCGACTTATCTTTGCTGGAAAGCAACTGGAAGATGGGCGAACCCTGTCTGACTACAAT 67257 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||| || || || ||||||||| | || | || | ||||| || Sbjct 67258 ATTCAAAAAGAGTCGACTCTTCACCTTGTACTGCGTCTGCGAGGTGG 67304 >SEQ58356 Length=38410 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 28958 AAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACC 29017 || |||||| |||||| | ||||| | ||||| |||||||| ||| ||| ||| | Sbjct 35270 AACAATGCAGATATTCGTGAAAACCCTTACGGGGAAAACCATCACCCTCGAGGTGGAGGC 35211 Query 29018 CGCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGA 29077 | | || || | | || | || ||||||| |||||||| ||| | || || Sbjct 35210 CTCCGATACTATTGAAAATGTAAAAGCAAAAATTCAAGATAAAGAGGGTATTCCACCGGA 35151 Query 29078 TCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTA 29137 ||| ||| | | |||||||| || ||||| ||||||||| | || | |||| || Sbjct 35150 TCAGCAACGTTTGATCTTTGCTGGTAAACAGCTGGAAGATGGCCGCACATTATCCGACTA 35091 Query 29138 CAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||||||||||||| ||||| | || | ||||| | ||| ||||||| Sbjct 35090 CAATATTCAGAAGGAGTCTACATTGCATCTTGTGTTGAGGTTAAGAGGAGG 35040 >seq4618 Length=10119 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| |||| || ||||| ||||||||||| || ||| || || || Sbjct 202 ATGCAAATTTTCGTCAAGACCTTGACTGGCAAAACCATCACTCTTGAAGTTGAGCCATCA 261 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || ||||| |||||| || ||||| ||| | || ||| || Sbjct 262 GACACCATTGAAAATGTTAAGGCCAAAATTCAAGACAAAGAGGGTATCCCACCAGACCAG 321 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || || ||||||||||||||||| || |||||| | || | | || |||||| Sbjct 322 CAGAGGCTCATCTTTGCGGGCAAACAGCTTGAAGATGGCCGCACACTCTCGGACTACAAT 381 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 29189 || || || |||||||| || || |||| | |||| |||| ||| Sbjct 382 ATCCAAAAAGAATCTACACTCCATTTGGTACTGAGATTGAGAGGTGGG 429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427985406850145