Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value SEQ21942 176 4e-39 seq5513 134 1e-26 seq2773 118 9e-22 seq2130 111 1e-19 >SEQ21942 Length=42535 Score = 176 bits (194), Expect = 4e-39 Identities = 334/489 (68%), Gaps = 2/489 (0%) Strand=Plus/Minus Query 102548 GGGTTGGCGCCCTTGCCGCCCGGAAACTCCCAATCGATGTCCACCCCGTCGAAAAACTTC 102607 || || || || || || || || ||||||||||| ||||| || |||||||| || ||| Sbjct 35094 GGATTAGCACCTTTTCCACCAGGGAACTCCCAATCAATGTCAACACCGTCGAAGAATTTC 35035 Query 102608 CACACCTGCAAAAACTCTTTAACGGATTCGACAAACACGCGCCGCTTGT-CCGCGTCGTG 102666 || || | || ||||| || ||| | ||||| ||| | || | || || | Sbjct 35034 CAAGTTTGGAGGAAGTCTTTCACTGATGCCACAAA-ACGATCTCTTTTTACCTTATCATC 34976 Query 102667 CATGAAATAGAACGGGTCGGACAGCGTCCAGCCGCCAATGGACGGCAGGATTTTCAAATG 102726 | ||| ||||| || || | || |||||||| || || || || || | |||| || Sbjct 34975 AAAGAAGTAGAATGGATCTGCCAATGTCCAGCCCCCGATTGATGGAAGAACCTTCAGATC 34916 Query 102727 CGGGTTTGCCAGCTTGGCCGCCATCAACTGGCCAAAGTTGCCTTTGTAGGGCTCGTTCCA 102786 || | || | || | ||||| || ||||||||||||||||| || |||||||| Sbjct 34915 AGGTCTAGCTTGTTTTAAAGACATCAGTTGTCCAAAGTTGCCTTTGTAAGGTTCGTTCCA 34856 Query 102787 TGCGGATACGCCCTTTTGCGGCTTTTGTATGGCGGCCCACGGGTCGTGGATAGCGACCTT 102846 | ||| | ||||| || || ||||||| || ||||| ||||||||||||| || || Sbjct 34855 GGAGGACAAACCCTTCTGTGGTTTTTGTAAAGCTGCCCAAGGGTCGTGGATAGAAACTTT 34796 Query 102847 AAAGTCTGCGCGGCCTTTGCACGAGCGCTGCAGCGCTTCAAAACTGCCGGGAATGGTCTT 102906 ||||| | || || |||| || || |||| |||| ||||| || || || Sbjct 34795 GAAGTCCTCTCGCCCGCTGCAAGATCGTTGCAAAGCTTGGAAACTTCCTTCGATTTCTTT 34736 Query 102907 GAGCGCGTCGTTTAGCCCGTCGCCGCCGCAAATCGGGATGAAGCCGTACAGCAGATGGGA 102966 | |||||| | ||||| ||||| || || ||||| || ||||| || ||||| | Sbjct 34735 CAAACTGTCGTTAATTCCGTCACCGCCACAGATGGGGATAAATCCGTAAAGAAGATGTGT 34676 Query 102967 CAGGTTGGGCAGCGGCACTTTGTCCACCGGAAAGCCGCGGCCGTACACGCCCCACTCTAC 103026 || || || | || || || || || || || | ||| || |||||||| || Sbjct 34675 AAGATTCGGAATGGGTACCTTATCTACTGGGAATTTTCTAGGGTAAACACCCCACTCCAC 34616 Query 103027 GAAATACGC 103035 ||||| || Sbjct 34615 AAAATAAGC 34607 >seq5513 Length=124375 Score = 134 bits (148), Expect = 1e-26 Identities = 197/279 (71%), Gaps = 0/279 (0%) Strand=Plus/Plus Query 29022 CACACGCCTCAGTCATCACCCGCTGCACAAAGTCGCGGCCCTTGACGAGCAGCACGTACT 29081 ||||||| || | || ||| || ||| | || || || ||||| || | ||||| Sbjct 10599 CACACGCTTCCGATATAACCTTTTGAACATACTCTCGTCCTTTGACAAGTTGGACGTAGG 10658 Query 29082 CGCAGCGGTCGTACCAGCGGGCGTGTTGCTGCCACGGCGCGTCGTCGGGTTCCCAATCCT 29141 | || || ||| |||| || || ||||||| ||| || ||||| ||||||||||| Sbjct 10659 CACATCGATCGAACCAACGTGCATGTTGCTCCCAGGGAATATCGTCATTTTCCCAATCCT 10718 Query 29142 TCAGACCGCCGTCGCAGCAAAAGCACCGCGTCTTGTCGCCCTGGCCAGTGTAAAAGAATC 29201 ||| ||| ||||| ||| | ||||| ||| ||||| || || |||||||| ||||| | Sbjct 10719 TCAAACCACCGTCACAGAAGAAGCATTTCGTTTTGTCTCCTTGACCAGTGTAGAAGAAAC 10778 Query 29202 CGGCCTCGGCCAACTCTTCGGGCCGCTGTTTCAACCCGCGGGGCCACTCCGCAAAGGTGC 29261 | || ||||| | ||| || ||| || || | ||| ||||| || |||| || | Sbjct 10779 CAGCTTCGGCTAGCTCCTCAGGCTTTTGGCGCATACTGCGAGGCCAATCGACAAATGTAC 10838 Query 29262 GCAAACGCGCGGCTTCCGTGGCATACTGCGGGTGCGCGG 29300 | | ||| || ||||| | ||||| | ||||| |||| Sbjct 10839 GGAGACGGGCAGCTTCGGATGCATATCGGGGGTGAGCGG 10877 >seq2773 Length=85211 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||||||| | ||| || | || | ||||||||| ||||||||||| ||||| | Sbjct 67076 CCACCTCGCAGACGGAGAACAAGGTGAAGAGTGGACTCTTTTTGAATGTTGTAGTCAGAG 67017 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 |||||| | | || ||||| || || || ||| | ||||||| ||| ||||| || Sbjct 67016 AGGGTTCGCCCATCTTCCAGTTGCTTTCCAGCAAAGATAAGTCGCTGTTGGTCTGGAGGG 66957 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||||||| ||| || ||| || | | | ||||| || || | Sbjct 66956 ATGCCTTCCTTGTCCTGGATTTTGGCTTTAACATTCTCAATTGTATCTGAAGGTTCAACT 66897 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 |||| ||||||||||| || || | || |||||||| ||||||||| Sbjct 66896 TCCAAAGTAATGGTCTTTCCAGTAAGAGTCTTGACAAAGATTTGCATT 66849 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||||||| | || || | || | ||| ||||| ||||||||||| ||||| | | Sbjct 66620 CCACCTCGCAGACGCAGAACAAGGTGAAGAGTAGACTCTTTTTGAATGTTGTAGTCAGAC 66561 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | | || ||||| || ||||| ||| |||| || | ||||||||| || Sbjct 66560 AGGGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAAATGAGCCGTTGCTGGTCCGGAGGG 66501 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||| ||||| ||| || || || | ||| |||||| ||||| | Sbjct 66500 ATGCCTTCTTTGTCTTGGATTTTCGCCTTTACGTTTTCGATAGTATCTGATGGCTCTACT 66441 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 || | |||||| ||||| || || | ||||| ||||| ||||||||| Sbjct 66440 TCTAAGGTAATCGTCTTACCTGTGAGAGTTTTAACAAAGATTTGCATT 66393 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| |||||||| | || || | || | ||| ||||| |||||||| || ||||| | Sbjct 67306 TTCCACCTCGCAGACGCAGTACAAGGTGAAGAGTCGACTCTTTTTGAATATTGTAGTCAG 67247 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 ||||||| | | || ||||| || || || ||| | ||||||| ||| ||||| | Sbjct 67246 ACAGGGTTCGCCCATCTTCCAGTTGCTTTCCAGCAAAGATAAGTCGCTGTTGGTCTGGAG 67187 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | ||||||||| || ||| || ||| || | | | || || || || Sbjct 67186 GGATGCCTTCCTTATCCTGGATTTTGGCTTTGACATTCTCAATTGTGTCCGAAGGTTCAA 67127 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| |||||||||||||| |||| ||||| ||||| |||||||| Sbjct 67126 CTTCCAAAGTAATGGTCTTGCCCGTTAGTGTTTTCACAAAAATTTGCAT 67078 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 20973 TGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGT 21032 ||||||||||| || ||||||||||| ||||| | |||||| | | || ||||| ||| Sbjct 67508 TGCAAAGTGGATTCTTTTTGAATGTTGTAGTCAGATAGGGTTCGCCCATCTTCCAGTTGT 67449 Query 21033 TTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTT 21092 || || ||| | || |||| ||| ||||| || | |||||||||||| ||| || Sbjct 67448 TTTCCAGCAAAGATGAGTCGCTGTTGGTCTGGAGGGATGCCTTCCTTGTCCTGGATTTTG 67389 Query 21093 TGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTT 21152 ||| || | | | ||||| || || ||||| ||||||||||| || || Sbjct 67388 GCTTTGACATTCTCAATTGTATCTGAAGGTTCTACTTCCAAAGTAATGGTCTTTCCAGTA 67329 Query 21153 AACGTTTTGACAAATATTTGCATT 21176 | || |||||||| || |||||| Sbjct 67328 AGAGTCTTGACAAAGATCTGCATT 67305 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 || || |||||||||||||| || || | ||| || | | || || || ||||| || Sbjct 66818 GTAGATTCCTTTTGAATGTTGTAATCAGACAGTGTACGCCCATCTTCTAGTTGTTTTCCA 66759 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || |||| ||| ||||| || | |||||||||||| ||| || ||| Sbjct 66758 GCAAAGATGAGTCGCTGTTGGTCTGGAGGGATGCCTTCCTTGTCCTGGATTTTGGCTTTA 66699 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | ||||| || || ||||| ||||| |||||||| || | ||| Sbjct 66698 ACATTCTCAATTGTATCTGAAGGTTCAACTTCCAAAGTAATAGTCTTGCCTGTCAGTGTT 66639 Query 21159 TTGACAAATATTTGCAT 21175 || ||||| |||||||| Sbjct 66638 TTCACAAAAATTTGCAT 66622 >seq2130 Length=187805 Score = 111 bits (122), Expect = 1e-19 Identities = 91/111 (82%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 38729 GGCGGCGTGGGGCTGAACCTGACCGGCGGCAACCACATCATCATGCTGGAGCCGCACTGG 38788 ||||||||||||||||||||| ||| | ||||||| | | |||| || || |||||| Sbjct 86219 GGCGGCGTGGGGCTGAACCTGTGCGGGGCCAACCACCTGCTGGTGCTCGACCCCCACTGG 86160 Query 38789 AACCCGCAAATTGAGCTGCAGGCGCAAGACCGCATCCACCGCATGGGCCAG 38839 |||||||| | |||| |||||||| ||||||||| ||||| |||||||| Sbjct 86159 AACCCGCAGCTCGAGCAACAGGCGCAGGACCGCATCTACCGCGTGGGCCAG 86109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421913580712844