Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value SEQ21942 277 1e-69 seq2773 113 4e-20 SEQ58356 96.9 3e-15 seq4618 96.9 3e-15 >SEQ21942 Length=42535 Score = 277 bits (306), Expect = 1e-69 Identities = 499/726 (69%), Gaps = 5/726 (1%) Strand=Plus/Minus Query 97539 TTTGACCAAGCCCCTTTAAAATCGTAAGTCATGAGAAATATTTTGTCTAATGACTTTTGC 97598 |||||||| || |||||||| |||||| |||| | ||| || | || | | | || Sbjct 35316 TTTGACCACGCTCCTTTAAAGTCGTAACTCATTAAAAAGATATGATCCATATATTGCTGA 35257 Query 97599 GCTTCGGCGTAGTTTACCACGGCAATCTTGTCGTAGCCCGCGCTTATAGCGCTTGTTAAT 97658 |||| ||| | || || ||||| || | || || || |||||| ||| | | Sbjct 35256 GCTTTCCTGTAATCAACTACTTGGATCTTATCCCAACCAGCACTAATAGCGGATGTCAGT 35197 Query 97659 TCGTAAACCCTGCCGGTTTGCACTTCGAGGTCGTCTAGCATTTCGCGCAGCTCATCCAAC 97718 || || | | ||||| | | || |||| |||||||| || | ||| | || | Sbjct 35196 TCATATTTCTTACCGGTCTCCGTGGATAGCTCGTTCAGCATTTCACGTAACTCTTTCATC 35137 Query 97719 AACAGAATGTATGTTTTGGCGTCACGCTCCGCATCGCCCAGCGACGGGTTAGCCCCTTTG 97778 | | | | || || ||||| | | | || || || ||||| ||||| Sbjct 35136 AGCTGGACATAAACTTCACCGTCA---TTTGGTCCACCGAGGTTAGGATTAGCACCTTTT 35080 Query 97779 CCGCCCGGAAATTCCCAATCGACGTCGACACCATCAAAAAATTTCCACACTTGCAAAAAT 97838 || || || || |||||||| | ||| ||||| || || |||||||| ||| | || Sbjct 35079 CCACCAGGGAACTCCCAATCAATGTCAACACCGTCGAAGAATTTCCAAGTTTGGAGGAAG 35020 Query 97839 TCCTTAACCGACTCTACAAAAACGTTTCTTTTTTCAACGTCGTGCATGAAATAGAACGGG 97898 || || || || | |||||| | ||||||| | || | | ||| ||||| || Sbjct 35019 TCTTTCACTGATGCCACAAAACGATCTCTTTTTACCTTATCATCAAAGAAGTAGAATGGA 34960 Query 97899 TCCGACAGAGTCCAGCCTCCTATTGAAGGAAGAATTTTTAGATGTGGGTTTGCTAATTTC 97958 || | || |||||||| || ||||| ||||||| || |||| || | ||| ||| Sbjct 34959 TCTGCCAATGTCCAGCCCCCGATTGATGGAAGAACCTTCAGATCAGGTCTAGCTTGTTTT 34900 Query 97959 GCCGCCATCAATTGTCCAAAATTGCCTTTGTACGGTTCGTTCCAAGCGGACACGCCCTTT 98018 | ||||| ||||||||| ||||||||||| ||||||||||| | ||||| ||||| Sbjct 34899 AAAGACATCAGTTGTCCAAAGTTGCCTTTGTAAGGTTCGTTCCAGGAGGACAAACCCTTC 34840 Query 98019 TGGGGTTTTTGTACGGCGGCCCACGGATCGTGGATGGCAACTTTGAAATCTTCGCGTCCC 98078 || |||||||||| || ||||| || |||||||| | ||||||||| || || || || Sbjct 34839 TGTGGTTTTTGTAAAGCTGCCCAAGGGTCGTGGATAGAAACTTTGAAGTCCTCTCGCCCG 34780 Query 98079 CTGCACGATCGTTGCAGAGCTTCAAAACTTCCGGGTATTGTTTTGAGGGCGTCGTTTATT 98138 ||||| |||||||||| ||||| |||||||| ||| ||| | |||||| ||| Sbjct 34779 CTGCAAGATCGTTGCAAAGCTTGGAAACTTCCTTCGATTTCTTTCAAACTGTCGTTAATT 34720 Query 98139 CCATCGCCACCGCAGATGGGTATGAAACCGTACAACAAG-TGCGATAAATTTGGCAAGGG 98197 || || || || |||||||| || || ||||| || ||| || | | ||| || | ||| Sbjct 34719 CCGTCACCGCCACAGATGGGGATAAATCCGTA-AAGAAGATGTGTAAGATTCGGAATGGG 34661 Query 98198 AACTTTGTCTACGGGAAAGCTGCGCCCGTACACACCCCACTCGACAAAGTACGCAGCGAC 98257 || || ||||| || || | | ||| ||||||||||| ||||| || || |||| Sbjct 34660 TACCTTATCTACTGGGAATTTTCTAGGGTAAACACCCCACTCCACAAAATAAGCTCCGAC 34601 Query 98258 AATTTT 98263 | ||| Sbjct 34600 GACTTT 34595 >seq2773 Length=85211 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| || | |||||| |||| ||||| || ||||| ||| ||||| || Sbjct 66622 ATGCAAATTTTTGTGAAAACACTGACAGGCAAGACTATTACTTTGGAAGTTGAACCTTCA 66681 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || | || ||||| || || ||||| | || ||| ||| Sbjct 66682 GATACAATTGAGAATGTTAAAGCCAAAATCCAGGACAAGGAAGGCATCCCTCCAGACCAA 66741 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || |||| |||||||| || |||||| | |||||| || || | |||||||| Sbjct 66742 CAGCGACTCATCTTTGCTGGAAAACAACTAGAAGATGGGCGTACACTGTCTGATTACAAC 66801 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||||||||||||||||| |||||| |||| ||||| |||||||| || Sbjct 66802 ATTCAAAAGGAATCTACGCTTCACTTGGTATTACGCTTACGAGGTGG 66848 Score = 102 bits (112), Expect = 7e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 25031 AAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACC 25090 ||||||||| ||||| | || ||| | || || |||||||| ||| || || || Sbjct 66162 AAAAATGCAGATATTTGTGAAGACACTCACTGGAAAAACCATAACCTTGGAGGTTGAGCC 66221 Query 25091 CGCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGA 25150 | || || | | || | || |||||| || ||||||||| | || || Sbjct 66222 ATCGGATACAATTGAAAATGTAAAAGCTAAAATTCAGGACAAAGAAGGTATCCCTCCCGA 66281 Query 25151 TCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTA 25210 ||| || | |||||||| || || ||||| | |||||| || || | ||||| Sbjct 66282 TCAGCAGCGTCTTATCTTCGCAGGGAAACAGCTTGAAGATGGGCGTACACTGTCTGATTA 66341 Query 25211 CAATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||| ||||||||||||||||| |||||| |||| ||||| |||||||| || Sbjct 66342 CAACATTCAAAAGGAATCTACGCTTCACTTGGTATTACGCTTACGAGGTGG 66392 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| || | |||||| | |||||||| |||||||| ||| ||||| | Sbjct 67078 ATGCAAATTTTTGTGAAAACACTAACGGGCAAGACCATTACTTTGGAAGTTGAACCTTCG 67137 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || |||| ||||| ||||| ||||| | || ||| ||| Sbjct 67138 GACACAATTGAGAATGTCAAAGCCAAAATCCAGGATAAGGAAGGCATCCCTCCAGACCAA 67197 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || ||||||||||||| || || ||| |||||||| ||| || | || |||||| Sbjct 67198 CAGCGACTTATCTTTGCTGGAAAGCAACTGGAAGATGGGCGAACCCTGTCTGACTACAAT 67257 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 |||||||| || || ||||||||| | || | || | ||||| || Sbjct 67258 ATTCAAAAAGAGTCGACTCTTCACCTTGTACTGCGTCTGCGAGGTGG 67304 >SEQ58356 Length=38410 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 25031 AAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACC 25090 || |||||| |||||| | ||||| | ||||| |||||||| ||| ||| ||| | Sbjct 35270 AACAATGCAGATATTCGTGAAAACCCTTACGGGGAAAACCATCACCCTCGAGGTGGAGGC 35211 Query 25091 CGCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGA 25150 | | || || | | || | || ||||||| |||||||| ||| | || || Sbjct 35210 CTCCGATACTATTGAAAATGTAAAAGCAAAAATTCAAGATAAAGAGGGTATTCCACCGGA 35151 Query 25151 TCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTA 25210 ||| ||| | | |||||||| || ||||| |||||||| | || | |||| || Sbjct 35150 TCAGCAACGTTTGATCTTTGCTGGTAAACAGCTGGAAGATGGCCGCACATTATCCGACTA 35091 Query 25211 CAATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||||||||| ||||| ||||| | || | ||||| | ||| ||||||| Sbjct 35090 CAATATTCAGAAGGAGTCTACATTGCATCTTGTGTTGAGGTTAAGAGGAGG 35040 >seq4618 Length=10119 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| |||| || ||||| ||||||||||| || ||| || || || Sbjct 202 ATGCAAATTTTCGTCAAGACCTTGACTGGCAAAACCATCACTCTTGAAGTTGAGCCATCA 261 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || | ||| |||||| || ||||| ||| | || ||| || Sbjct 262 GACACCATTGAAAATGTTAAGGCCAAAATTCAAGACAAAGAGGGTATCCCACCAGACCAG 321 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || || || ||||||||||||||||| | |||||| | || | | || |||||| Sbjct 322 CAGAGGCTCATCTTTGCGGGCAAACAGCTTGAAGATGGCCGCACACTCTCGGACTACAAT 381 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 25262 || ||||| |||||||| || || |||| | |||| |||| ||| Sbjct 382 ATCCAAAAAGAATCTACACTCCATTTGGTACTGAGATTGAGAGGTGGG 429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410460562690826