Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value SEQ58356 152 5e-32 seq4618 129 6e-25 SEQ37497 113 5e-20 seq2773 113 5e-20 seq2744 113 5e-20 >SEQ58356 Length=38410 Score = 152 bits (168), Expect = 5e-32 Identities = 173/232 (75%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 40685 GAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAG 40744 ||| |||||| |||||||| ||||| || ||||| |||||||||||| |||| || || | Sbjct 35271 GAACAATGCAGATATTCGTGAAAACCCTTACGGGGAAAACCATCACCCTCGAGGTGGAGG 35212 Query 40745 CCACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGG 40804 || |||| | | ||| | || | |||||||| || |||||||| || || ||| Sbjct 35211 CCTCCGATACTATTGAAAATGTAAAAGCAAAAATTCAAGATAAAGAGGGTATTCCACCGG 35152 Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 40864 | |||||||| | |||| || || ||||||||||| || | ||||| | ||||| Sbjct 35151 ATCAGCAACGTTTGATCTTTGCTGGTAAACAGCTGGAAGATGGCCGCACATTATCCGACT 35092 Query 40865 ACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||| || ||||||||| | || ||||||| |||||| | || || || || Sbjct 35091 ACAATATTCAGAAGGAGTCTACATTGCATCTTGTGTTGAGGTTAAGAGGAGG 35040 >seq4618 Length=10119 Score = 129 bits (142), Expect = 6e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCA-C 40748 |||||||| ||||| || || | || |||||||||||||| | || || | ||||| | Sbjct 202 ATGCAAATTTTCGTCAAGACCTTGACTGGCAAAACCATCACTCTTGAAGTTG-AGCCATC 260 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | ||| | |||| ||||||| ||||||||||| ||||| | ||||| Sbjct 261 AGACACCATTGAAAATGTTAAGGCCAAAATTCAAGACAAAGAGGGTATCCCACCAGACCA 320 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | ||||||| |||||||||||||| || || | ||||| ||| |||||||| Sbjct 321 GCAGAGGCTCATCTTTGCGGGCAAACAGCTTGAAGATGGCCGCACACTCTCGGACTACAA 380 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||| || || | || || ||| | || || | ||||| || || Sbjct 381 TATCCAAAAAGAATCTACACTCCATTTGGTACTGAGATTGAGAGGTGG 428 Score = 127 bits (140), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || | || |||||||| ||||| | || || || |||| | Sbjct 430 ATGCAAATTTTCGTCAAGACCTTGACTGGCAAAACTATCACTCTTGAAGTTGA-GCCATC 488 Query 40750 -GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | ||| | |||| ||||||| ||||||||||| ||||| | ||||| Sbjct 489 AGACACCATCGAAAATGTTAAGGCCAAAATTCAAGACAAAGAGGGTATCCCACCAGACCA 548 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | ||||||| || ||||| ||||| || || | ||||| ||| |||||||| Sbjct 549 GCAGAGGCTCATCTTTGCCGGCAAGCAGCTTGAAGATGGCCGCACACTCTCGGACTACAA 608 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||| || || |||| || ||| | || || | |||||||| ||| Sbjct 609 TATCCAAAAAGAATCCACACTCCATTTGGTACTGAGATTGAGGGGTGGC 657 Score = 107 bits (118), Expect = 2e-18 Identities = 146/201 (73%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 40717 GGCAAAACCATCACCGTCGACGTCGAAGCCA-CCGACAGCGTGCAAACGCTCAAGGAAAA 40775 |||||||||||||| | || || | ||||| | |||| | | ||| | |||| || Sbjct 1 GGCAAAACCATCACTCTTGAAGTTG-AGCCATCAGACACCATTGAAAATGTTAAGGCTAA 59 Query 40776 AATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACA 40835 ||| | ||||||||||| ||||| | |||||||| | ||||||| || ||||| || Sbjct 60 AATCCAAGACAAAGAGGGTATCCCTCCAGACCAGCAGAGGCTCATCTTTGCCGGCAAGCA 119 Query 40836 GCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCT 40895 ||| || || | ||||| ||| |||||||| |||||||| || |||| || ||| | Sbjct 120 GCTTGAAGATGGCCGCACACTCTCGGACTACAATATCCAGAAAGAATCCACACTCCATTT 179 Query 40896 AGTGTTGCGCTTGAGGGGCGG 40916 || || | ||||| || || Sbjct 180 GGTACTGAGATTGAGAGGTGG 200 >SEQ37497 Length=345 Score = 113 bits (124), Expect = 5e-20 Identities = 140/189 (74%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCA-C 40748 |||||||| ||||| || || | || |||||||||||||| | || || | ||||| | Sbjct 158 ATGCAAATTTTCGTCAAGACCTTGACTGGCAAAACCATCACTCTTGAAGTTG-AGCCATC 216 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | ||| | |||| ||||||| ||||||||||| ||||| | ||||| Sbjct 217 AGACACCATTGAAAATGTTAAGGCCAAAATTCAAGACAAAGAGGGTATCCCACCAGACCA 276 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | ||||| | || ||||||||||| || || | ||||| ||| |||||||| Sbjct 277 GCAGAGGCTCATTTTTGCCGGCAAACAGCTTGAAGATGGCCGCACACTCTCGGACTACAA 336 Query 40869 CATCCAGAA 40877 ||||| || Sbjct 337 TATCCAAAA 345 Score = 84.2 bits (92), Expect = 2e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 40768 AAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCG 40827 |||| ||||| | ||||||||||| ||||| | |||||||| | ||||||| || Sbjct 8 AAGGCCAAAATACAAGACAAAGAGGGTATCCCACCAGACCAGCAGAGGCTCATCTTTGCC 67 Query 40828 GGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACG 40887 ||||| ||||| || || | || || ||| |||||||| ||||| || || |||| Sbjct 68 GGCAAGCAGCTTGAAGATGGTCGTACACTCTCTGACTACAATATCCAAAAAGAATCCACA 127 Query 40888 CTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 || ||| | || || | ||||| || || Sbjct 128 CTCCATTTGGTACTGAGATTGAGAGGTGG 156 >seq2773 Length=85211 Score = 113 bits (124), Expect = 5e-20 Identities = 159/218 (73%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| || || ||||| ||||| || || || || ||| | || || || |||| Sbjct 66393 AATGCAAATCTTTGTTAAAACTCTCACAGGTAAGACGATTACCTTAGAAGTAGA-GCCAT 66451 Query 40749 C-GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | || | | | ||||| | |||| ||||| | |||||||| |||||||| ||||| Sbjct 66452 CAGATACTATCGAAAACG-TAAAGGCGAAAATCCAAGACAAAGAAGGCATCCCTCCGGAC 66510 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 |||||||| ||||| | || ||||| || ||||| || | || ||||| |||||| Sbjct 66511 CAGCAACGGCTCATTTTTGCTGGCAAGCAACTGGAAGATGGACGTACCCTGTCTGACTAC 66570 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||| || || ||| | || || || || || |||| Sbjct 66571 AACATTCAAAAAGAGTCTACTCTTCACCTTGTTCTGCG 66608 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || || || || || || || || || ||||| || | || || ||| | | Sbjct 67305 AATGCAGATCTTTGTCAAGACTCTTACTGGAAAGACCATTACTTTGGAAGTAGAACCTTC 67364 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| | ||||| | ||||| || |||||||| | ||||| Sbjct 67365 AGATACAATTGAGAATGTCAAAGCCAAAATCCAGGACAAGGAAGGCATCCCTCCAGACCA 67424 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || |||||||||| || || ||||| ||||| || | ||| ||||| |||||||| Sbjct 67425 ACAGCGACTCATCTTTGCTGGAAAACAACTGGAAGATGGGCGAACCCTATCTGACTACAA 67484 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||| || || || |||| |||| |||| || || Sbjct 67485 CATTCAAAAAGAATCCACTTTGCACTTAGTATTACG 67520 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| || || || || || || || || ||||| || | || || ||| | | Sbjct 66849 AATGCAAATCTTTGTCAAGACTCTTACTGGAAAGACCATTACTTTGGAAGTTGAACCTTC 66908 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | | || | ||||| | ||||| || |||||||| | ||||| Sbjct 66909 AGATACAATTGAGAATGTTAAAGCCAAAATCCAGGACAAGGAAGGCATCCCTCCAGACCA 66968 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || ||||| |||| || || || || ||||| || | ||| |||||| |||||||| Sbjct 66969 ACAGCGACTTATCTTTGCTGGAAAGCAACTGGAAGATGGGCGAACCCTCTCTGACTACAA 67028 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||| || || ||| |||| || || || || Sbjct 67029 CATTCAAAAAGAGTCCACTCTTCACCTTGT 67058 >seq2744 Length=156805 Score = 113 bits (124), Expect = 5e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || || ||||| || ||||| |||||||| || ||| | || || ||| | Sbjct 156567 AACATGCAGATTTTTGTAAAGACACTCACTGGCAAAACTATTACCCTAGAGGTAGAACCT 156626 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | ||| | |||| ||||||| ||||||||||| ||||| | ||| Sbjct 156627 TCAGACACTATTGAAAATGTAAAGGCTAAAATTCAAGACAAAGAGGGTATCCCGCCAGAC 156686 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| | || |||| || || || ||||| || || | || || ||| |||||| Sbjct 156687 CAGCAGAGGCTTATCTTTGCTGGTAAGCAGCTTGAAGATGGTCGTACACTCTCTGACTAC 156746 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||| || || |||| || ||| | || || | ||||| || || Sbjct 156747 AACATCCAAAAAGAATCCACACTCCATTTGGTACTGAGATTGAGAGGTGG 156796 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514786679921840