Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value SEQ11636 89.7 4e-13 >SEQ11636 Length=47261 Score = 89.7 bits (98), Expect = 4e-13 Identities = 155/223 (70%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 97110 TAAATCAGTGACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGG 97169 ||| | ||| | || || ||||| ||||| || || ||||| || ||||| || || Sbjct 5718 TAAGTTAGTTATGTGTGCAATCATGTGGGTTAAAAGCGAGTAGCTGGCTATGTTGAAGGG 5659 Query 97170 CACCCCTAGTCCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACA 97229 || |||| |||| |||||| ||| || || | | ||| || |||| |||| | Sbjct 5658 TACTCCTAAGCCCAAATCAGCACTTCTCTGGTACATGTTACACGACAGCTCGCCATTAGC 5599 Query 97230 CACATAAAACTGACTCAATACA-TGACAGGGGGGCAACGCCATTTTTGGAACATCTAAGA 97288 ||||| ||||| | | | ||| ||||| || || | ||||||||| | ||| Sbjct 5598 TACATAGAACTG-CACGAGACAGTGACATGGAGGTAGAGCCATTTTTTTTAAATCAGCTG 5540 Query 97289 CATTCCAAGCACACATCAACATTCTTCTATCGGTTGGGTTTGT 97331 |||||| ||||| || | |||||||||||| |||| ||||| Sbjct 5539 GATTCCACGCACAAATTATCATTCTTCTATCATTTGGATTTGT 5497 Score = 87.8 bits (96), Expect = 1e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 96963 TTTAAAATCATCAATAGATGCAATCTTTCTGGCAAACTTTAGTGTTGGGAAAGGCCTGGG 97022 ||||||||||||||| || |||| ||||| ||||| || | ||| ||||| |||||||| Sbjct 6480 TTTAAAATCATCAATTGAATCAATTTTTCTTGCAAATTTCAATGTAGGGAATGGCCTGGG 6421 Query 97023 AGTTCGCGTAAGCTGCTCTGTGAGAGCATCAATGTGATTCACATAAATGTGAGCATCTCC 97082 || | || || || | || | || | ||||| | ||||| ||| | |||||| Sbjct 6420 TTCTCTCCGTAGTTGTTCATTCAGTGGTTCCACATGATTGAGATAAACGTGGGTATCTCC 6361 Query 97083 TAAAGTGTGAATAAATTCTCCAG 97105 | || || ||||||||||||| Sbjct 6360 AATTGTATGTATAAATTCTCCAG 6338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346500157187630