Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq2773 156 6e-33 SEQ58356 129 9e-25 seq2744 127 3e-24 seq4618 109 8e-19 SEQ37497 91.5 2e-13 >seq2773 Length=85211 Score = 156 bits (172), Expect = 6e-33 Identities = 173/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| |||||| | |||||||| || || ||||| ||||| | ||| |||| || Sbjct 66165 AATGCAGATATTTGTGAAGACACTCACTGGAAAAACCATAACCTTGGAGGTTGAGCCATC 66224 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||||||| ||| ||||| |||||||| || ||||||||||| || || ||||| Sbjct 66225 GGATACAATTGAAAATGTAAAAGCTAAAATTCAGGACAAAGAAGGTATCCCTCCCGATCA 66284 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || | ||||| || ||||| ||||| | || ||| | || ||| | ||||| || Sbjct 66285 GCAGCGTCTTATCTTCGCAGGGAAACAGCTTGAAGATGGGCGTACACTGTCTGATTACAA 66344 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||| ||||| || | || ||||| ||||| ||||||||||| || Sbjct 66345 CATTCAAAAGGAATCTACGCTTCACTTGGTATTACGCTTACGAGGTGGAAT 66395 Score = 145 bits (160), Expect = 1e-29 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | || ||||| |||||||| ||||| ||| | || ||||| | Sbjct 66622 ATGCAAATTTTTGTGAAAACACTGACAGGCAAGACTATTACTTTGGAAGTTGAACCTTCA 66681 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||||||| ||| | ||| ||||| || || || ||||| || || || || ||| Sbjct 66682 GATACAATTGAGAATGTTAAAGCCAAAATCCAGGACAAGGAAGGCATCCCTCCAGACCAA 66741 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | || || ||||| ||||||||| |||| ||| | || ||| | ||||| || Sbjct 66742 CAGCGACTCATCTTTGCTGGAAAACAACTAGAAGATGGGCGTACACTGTCTGATTACAAC 66801 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||| ||||| || | || ||||| ||||| ||||||||||| || Sbjct 66802 ATTCAAAAGGAATCTACGCTTCACTTGGTATTACGCTTACGAGGTGGAAT 66851 Score = 125 bits (138), Expect = 1e-23 Identities = 170/236 (72%), Gaps = 1/236 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || ||| | ||||| || || || || || || ||| | || | ||| | Sbjct 67305 AATGCAGATCTTTGTCAAGACTCTTACTGGAAAGACCATTACTTTGGAAGTAGAACCTTC 67364 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||||||| ||| | ||| ||||| || || || ||||| || || || || || Sbjct 67365 AGATACAATTGAGAATGTCAAAGCCAAAATCCAGGACAAGGAAGGCATCCCTCCAGACCA 67424 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| | || || ||||| ||||||||| | || ||| | ||||| || || || || Sbjct 67425 ACAGCGACTCATCTTTGCTGGAAAACAACTGGAAGATGGGCGAACCCTATCTGACTACAA 67484 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG-TATTAAA 124772 |||||||||||||| |||||||| || || |||||| | ||||| || |||||| Sbjct 67485 CATTCAAAAAGAATCCACTTTGCACTTAGTATTACGTCTCCGAGGAGGCAATTAAA 67540 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | || |||||||| ||||| || || ||| | || ||||| | Sbjct 67078 ATGCAAATTTTTGTGAAAACACTAACGGGCAAGACCATTACTTTGGAAGTTGAACCTTCG 67137 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || |||||| ||| | ||| ||||| || ||||| ||||| || || || || ||| Sbjct 67138 GACACAATTGAGAATGTCAAAGCCAAAATCCAGGATAAGGAAGGCATCCCTCCAGACCAA 67197 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | ||||| ||||| ||||| ||| | || ||| | ||||| | || || ||| Sbjct 67198 CAGCGACTTATCTTTGCTGGAAAGCAACTGGAAGATGGGCGAACCCTGTCTGACTACAAT 67257 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||||||||| || ||| | || | || | ||| | |||||||| || Sbjct 67258 ATTCAAAAAGAGTCGACTCTTCACCTTGTACTGCGTCTGCGAGGTGGAAT 67307 Score = 116 bits (128), Expect = 6e-21 Identities = 169/239 (71%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| | ||||| || || || || || || ||| | || ||||| | Sbjct 66849 AATGCAAATCTTTGTCAAGACTCTTACTGGAAAGACCATTACTTTGGAAGTTGAACCTTC 66908 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||||||| ||| | ||| ||||| || || || ||||| || || || || || Sbjct 66909 AGATACAATTGAGAATGTTAAAGCCAAAATCCAGGACAAGGAAGGCATCCCTCCAGACCA 66968 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| | ||||| ||||| ||||| ||| | || ||| | ||||| | || || || Sbjct 66969 ACAGCGACTTATCTTTGCTGGAAAGCAACTGGAAGATGGGCGAACCCTCTCTGACTACAA 67028 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 ||||||||||| || ||| | || | ||| | ||| | ||||||||||| ||| || Sbjct 67029 CATTCAAAAAGAGTCCACTCTTCACCTTGTTCTCCGTCTGCGAGGTGGTATGCAAATTT 67087 Score = 107 bits (118), Expect = 3e-18 Identities = 167/239 (70%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| | || || || ||||| || || || || |||| | || || Sbjct 66393 AATGCAAATCTTTGTTAAAACTCTCACAGGTAAGACGATTACCTTAGAAGTAGAGCCATC 66452 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| || || |||| |||||| ||||| |||||||| || || || || || Sbjct 66453 AGATACTATCGAAAACGTAAAGGCGAAAATCCAAGACAAAGAAGGCATCCCTCCGGACCA 66512 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| |||| |||||||| || || ||| | || ||| | || || | || || || Sbjct 66513 GCAACGGCTCATTTTTGCTGGCAAGCAACTGGAAGATGGACGTACCCTGTCTGACTACAA 66572 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 ||||||||||| || ||| | || | ||| | ||| | ||||||||||| ||| || Sbjct 66573 CATTCAAAAAGAGTCTACTCTTCACCTTGTTCTGCGTCTGCGAGGTGGTATGCAAATTT 66631 >SEQ58356 Length=38410 Score = 129 bits (142), Expect = 9e-25 Identities = 173/240 (72%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 124536 ACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCA 124595 |||||||| ||||| | || || || || || ||||| || || | ||| | || || Sbjct 35269 ACAATGCAGATATTCGTGAAAACCCTTACGGGGAAAACCATCACCCTCGAGGTGGAGGCC 35210 Query 124596 AATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGAT 124655 ||||| ||| ||| ||||| ||||||||||||||||| ||||| ||||| ||| Sbjct 35209 TCCGATACTATTGAAAATGTAAAAGCAAAAATTCAAGATAAAGAGGGTATTCCACCGGAT 35150 Query 124656 CAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTAT 124715 || ||| | | || ||||| || ||||| | || ||| | || |||||| || || Sbjct 35149 CAGCAACGTTTGATCTTTGCTGGTAAACAGCTGGAAGATGGCCGCACATTATCCGACTAC 35090 Query 124716 AATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAAT 124775 |||||||| || || || || |||||| | || || | ||| |||| |||| |||||| Sbjct 35089 AATATTCAGAAGGAGTCTACATTGCATCTTGTGTTGAGGTTAAGAGGAGGTA--AAAAAT 35032 >seq2744 Length=156805 Score = 127 bits (140), Expect = 3e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| |||||||||| || ||||||||||| || ||||| | ||| | Sbjct 156570 ATGCAGATTTTTGTAAAGACACTCACTGGCAAAACTATTACCCTAGAGGTAGAACCTTCA 156629 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| |||| ||||||||||| ||||| ||||| || || || || Sbjct 156630 GACACTATTGAAAATGTAAAGGCTAAAATTCAAGACAAAGAGGGTATCCCGCCAGACCAG 156689 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || |||||||| ||||| || || || | || ||| |||| ||| | || || || Sbjct 156690 CAGAGGCTTATCTTTGCTGGTAAGCAGCTTGAAGATGGTCGTACACTCTCTGACTACAAC 156749 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||||||||| || | |||||||| | | || ||||||| || Sbjct 156750 ATCCAAAAAGAATCCACACTCCATTTGGTACTGAGATTGAGAGGTGGGAT 156799 >seq4618 Length=10119 Score = 109 bits (120), Expect = 8e-19 Identities = 167/238 (70%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | ||||| | || |||||||| || ||| | || |||| || Sbjct 202 ATGCAAATTTTCGTCAAGACCTTGACTGGCAAAACCATCACTCTTGAAGTTGAGCCATCA 261 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | || ||||||||||| ||||| ||||| ||||| || || Sbjct 262 GACACCATTGAAAATGTTAAGGCCAAAATTCAAGACAAAGAGGGTATCCCACCAGACCAG 321 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||||| || ||||| || ||||| | || ||| | || ||| | || || ||| Sbjct 322 CAGAGGCTCATCTTTGCGGGCAAACAGCTTGAAGATGGCCGCACACTCTCGGACTACAAT 381 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 || ||||||||||| || | |||||||| | | || ||||||| || ||| || Sbjct 382 ATCCAAAAAGAATCTACACTCCATTTGGTACTGAGATTGAGAGGTGGGATGCAAATTT 439 Score = 107 bits (118), Expect = 3e-18 Identities = 189/272 (69%), Gaps = 4/272 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | ||||| | || ||||||||||| ||| | || |||| || Sbjct 430 ATGCAAATTTTCGTCAAGACCTTGACTGGCAAAACTATCACTCTTGAAGTTGAGCCATCA 489 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || ||| | || ||||||||||| ||||| ||||| ||||| || || Sbjct 490 GACACCATCGAAAATGTTAAGGCCAAAATTCAAGACAAAGAGGGTATCCCACCAGACCAG 549 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||||| || ||||| || || || | || ||| | || ||| | || || ||| Sbjct 550 CAGAGGCTCATCTTTGCCGGCAAGCAGCTTGAAGATGGCCGCACACTCTCGGACTACAAT 609 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG-TATTAAAAATTC 124777 || ||||||||||| || | |||||||| | | || | ||||| ||||| | | | Sbjct 610 ATCCAAAAAGAATCCACACTCCATTTGGTACTGAGATTGAGGGGTGGCAATTAATAGTAC 669 Query 124778 --ATAAAAATTGATTGTAAAT-AAATATCACT 124806 ||| ||| |||| |||| |||||| ||| Sbjct 670 ATATAGAAAAAGATTCGAAATAAAATATAACT 701 >SEQ37497 Length=345 Score = 91.5 bits (100), Expect = 2e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | ||||| | || |||||||| || ||| | || |||| || Sbjct 158 ATGCAAATTTTCGTCAAGACCTTGACTGGCAAAACCATCACTCTTGAAGTTGAGCCATCA 217 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | || ||||||||||| ||||| ||||| ||||| || || Sbjct 218 GACACCATTGAAAATGTTAAGGCCAAAATTCAAGACAAAGAGGGTATCCCACCAGACCAG 277 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||||| |||||||| || ||||| | || ||| | || ||| | || || ||| Sbjct 278 CAGAGGCTCATTTTTGCCGGCAAACAGCTTGAAGATGGCCGCACACTCTCGGACTACAAT 337 Query 124719 ATTCAAAA 124726 || ||||| Sbjct 338 ATCCAAAA 345 Score = 89.7 bits (98), Expect = 8e-13 Identities = 112/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 ||||| ||||| ||||| ||||| ||||| || || || ||||| || ||||| || || Sbjct 14 AAAATACAAGACAAAGAGGGTATCCCACCAGACCAGCAGAGGCTCATCTTTGCCGGCAAG 73 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 || | || ||| |||| ||| | || || ||||| ||||||||||| || | ||| Sbjct 74 CAGCTTGAAGATGGTCGTACACTCTCTGACTACAATATCCAAAAAGAATCCACACTCCAT 133 Query 124743 TTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 ||||| | | || ||||||| || ||| || Sbjct 134 TTGGTACTGAGATTGAGAGGTGGGATGCAAATTT 167 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 754821804131200