Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value SEQ21942 172 5e-38 seq2773 143 2e-29 seq2744 120 3e-22 >SEQ21942 Length=42535 Score = 172 bits (190), Expect = 5e-38 Identities = 344/504 (68%), Gaps = 8/504 (2%) Strand=Plus/Plus Query 21569 AAAATCGTGGCGGCCTACTTTGTCGAATGGGGAGTGTACCTGAGACAGTTCCCCGTCGAC 21628 ||| |||| | || || ||||| || ||||| || |||| ||| | ||||| || || Sbjct 34595 AAAGTCGTCGGAGCTTATTTTGTGGAGTGGGGTGTTTACCCTAGAAAATTCCCAGTAGAT 34654 Query 21629 AAGGTGCCGGCGCCGAATCTATCACATATACTATACGGCTTCGTGCCGATATGCGGAGGC 21688 ||||| || |||||||| ||||| | || ||||| || | || || || || || Sbjct 34655 AAGGTACCCATTCCGAATCTTACACATCTTCTTTACGGATTTATCCCCATCTGTGGCGGT 34714 Query 21689 GACGGCATCAACGACGCGCTAAAAACGGTGCCTGGCAGTTTTGAGGCATTGCAACGTTCG 21748 ||||| || |||||| | ||| | || ||||| | || |||||||| || Sbjct 34715 GACGGAATTAACGACAGTTTGAAAGAAATCGAAGGAAGTTTCCAAGCTTTGCAACGATCT 34774 Query 21749 TGT-GCGGGTCGGGCCGATTTCAAGGTGGCTATACACGATCCGTGGGCCGCAATACAAAA 21807 || ||||| || | || ||||| || |||| ||||| || ||||| || ||||||| Sbjct 34775 TGCAGCGGG-CGAGAGGACTTCAAAGTTTCTATCCACGACCCTTGGGCAGCTTTACAAAA 34833 Query 21808 GCCCCAAAAGGGCGTCTCGTCATGGAACGAACCGTACAAAGGCAACTTTGGTCAACTGAT 21867 || || ||||| | || || ||||||||||| ||||||||||||||||| |||||||| Sbjct 34834 ACCACAGAAGGGTTTGTCCTCCTGGAACGAACCTTACAAAGGCAACTTTGGACAACTGAT 34893 Query 21868 GGCAATGAAGAGGGCCAATCCTCACATTAAAGTGTTCGCATCGATCGGCGGATGGACTCT 21927 | | | || || | ||| | | || || | |||| ||||| || ||||| | Sbjct 34894 GTCTTTAAAACAAGCTAGACCTGATCTGAAGGTTCTTCCATCAATCGGGGGCTGGACATT 34953 Query 21928 GTCCGATCCATTTTATCATATGCACGACGCCGACGTCAGACGGG---TGTTTATCGATTC 21984 | | |||||||| || | | | || | | || | | | | ||| | | || Sbjct 34954 GGCAGATCCATTCTA-CTTCT--TTGATGATAAGGTAAAAAGAGATCGTTTTGTGGCATC 35010 Query 21985 AGTTGAAGAATTTCTGCTCACGTGGAAGTTCTATGACGGCGTCCACATCGATTGGGAGTT 22044 ||| |||| || || | || ||||| |||| ||||| || |||| ||||||||||| Sbjct 35011 AGTGAAAGACTTCCTCCAAACTTGGAAATTCTTCGACGGTGTTGACATTGATTGGGAGTT 35070 Query 22045 TCCCGGCGGCAAGGGAGCCAACCC 22068 || || || || || || || || Sbjct 35071 CCCTGGTGGAAAAGGTGCTAATCC 35094 >seq2773 Length=85211 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || || ||||| | || |||||||| | ||||| || ||||||||||||||||| | Sbjct 66392 CCACCTCGTAAGCGTAATACCAAGTGAAGCGTAGATTCCTTTTGAATGTTGTAATCAGAC 66333 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | || ||| ||| || |||||||| || ||| |||| |||||||||||||||||||| Sbjct 66332 AGTGTACGCCCATCTTCAAGCTGTTTCCCTGCGAAGATAAGACGCTGCTGATCGGGAGGG 66273 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 || || || ||||| |||||| ||| || | ||| | || |||| ||| ||| Sbjct 66272 ATACCTTCTTTGTCCTGAATTTTAGCTTTTACATTTTCAATTGTATCCGATGGCTCAACC 66213 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | ||| | ||||| || || || || || ||||| |||||||| Sbjct 66212 TCCAAGGTTATGGTTTTTCCAGTGAGTGTCTTCACAAATATCTGCAT 66166 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || || ||||| | || |||||||| | ||||| || ||||||||||||||||| | Sbjct 66848 CCACCTCGTAAGCGTAATACCAAGTGAAGCGTAGATTCCTTTTGAATGTTGTAATCAGAC 66789 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | || ||| ||| || || ||||||||||| ||||||| ||||| || || ||||| Sbjct 66788 AGTGTACGCCCATCTTCTAGTTGTTTTCCAGCAAAGATGAGTCGCTGTTGGTCTGGAGGG 66729 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 ||||| |||||||| ||||| |||||| | || | || || | || || Sbjct 66728 ATGCCTTCCTTGTCCTGGATTTTGGCTTTAACATTCTCAATTGTATCTGAAGGTTCAACT 66669 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | || | || ||||| ||||| ||||| |||||||| ||||| Sbjct 66668 TCCAAAGTAATAGTCTTGCCTGTCAGTGTTTTCACAAAAATTTGCAT 66622 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 ||||||||||||||||||||||| || || || || ||| || || || || ||| Sbjct 66590 GTAGACTCTTTTTGAATGTTGTAGTCAGACAGGGTACGTCCATCTTCCAGTTGCTTGCCA 66531 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || | ||||| || ||||| || ||||| ||||| || |||||| ||||| || Sbjct 66530 GCAAAAATGAGCCGTTGCTGGTCCGGAGGGATGCCTTCTTTGTCTTGGATTTTCGCCTTT 66471 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | ||||| || || | ||| || || | ||| | ||| || || || |||||| Sbjct 66470 ACGTTTTCGATAGTATCTGATGGCTCTACTTCTAAGGTAATCGTCTTACCTGTGAGAGTT 66411 Query 118722 TTTACAAAAATCTGCAT 118738 || ||||| || ||||| Sbjct 66410 TTAACAAAGATTTGCAT 66394 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || |||||||||||||| ||||| || || || ||| ||| || || || |||||| Sbjct 67274 GTCGACTCTTTTTGAATATTGTAGTCAGACAGGGTTCGCCCATCTTCCAGTTGCTTTCCA 67215 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| || ||||| || || ||||| ||||| ||||| || ||||| ||| Sbjct 67214 GCAAAGATAAGTCGCTGTTGGTCTGGAGGGATGCCTTCCTTATCCTGGATTTTGGCTTTG 67155 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | ||||||| || || || | || | || ||||| || || ||| Sbjct 67154 ACATTCTCAATTGTGTCCGAAGGTTCAACTTCCAAAGTAATGGTCTTGCCCGTTAGTGTT 67095 Query 118722 TTTACAAAAATCTGCAT 118738 || |||||||| ||||| Sbjct 67094 TTCACAAAAATTTGCAT 67078 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 118527 AACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCC 118586 || || ||||| | || || ||||||||||||||||| || | || ||| ||| Sbjct 67517 AATACTAAGTGCAAAGTGGATTCTTTTTGAATGTTGTAGTCAGATAGGGTTCGCCCATCT 67458 Query 118587 TCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCT 118646 || || ||||||||||| ||||||| ||||| || || ||||| ||||| |||||||| Sbjct 67457 TCCAGTTGTTTTCCAGCAAAGATGAGTCGCTGTTGGTCTGGAGGGATGCCTTCCTTGTCC 67398 Query 118647 GTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTT 118706 ||||| ||| || | || | || || | || || || | || | || Sbjct 67397 TGGATTTTGGCTTTGACATTCTCAATTGTATCTGAAGGTTCTACTTCCAAAGTAATGGTC 67338 Query 118707 TTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || ||||| || ||||| |||||||| Sbjct 67337 TTTCCAGTAAGAGTCTTGACAAAGATCTGCAT 67306 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || |||||||||||||||||||| || | || ||| ||| || || || |||||| Sbjct 67046 GTGGACTCTTTTTGAATGTTGTAGTCAGAGAGGGTTCGCCCATCTTCCAGTTGCTTTCCA 66987 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| || ||||| || || ||||| ||||| |||||||| ||||| |||| Sbjct 66986 GCAAAGATAAGTCGCTGTTGGTCTGGAGGGATGCCTTCCTTGTCCTGGATTTTGGCTTTA 66927 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | || || | || || || | || | || || || || ||||| Sbjct 66926 ACATTCTCAATTGTATCTGAAGGTTCAACTTCCAAAGTAATGGTCTTTCCAGTAAGAGTC 66867 Query 118722 TTTACAAAAATCTGCAT 118738 || ||||| || ||||| Sbjct 66866 TTGACAAAGATTTGCAT 66850 >seq2744 Length=156805 Score = 120 bits (132), Expect = 3e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 118521 AATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGC 118580 ||||||| ||||| |||| ||| || |||||||| |||||||| || | || || Sbjct 156787 AATCTCAGTACCAAATGGAGTGTGGATTCTTTTTGGATGTTGTAGTCAGAGAGTGTACGA 156728 Query 118581 GTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCC 118640 ||| || ||||| || ||||| |||| || | |||||| || || || || ||||| Sbjct 156727 CCATCTTCAAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGGTCTGGCGGGATACCCTCT 156668 Query 118641 TTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTC 118700 |||||| |||||| || || | ||| | ||||| | || ||||| | ||| Sbjct 156667 TTGTCTTGAATTTTAGCCTTTACATTTTCAATAGTGTCTGAAGGTTCTACCTCTAGGGTA 156608 Query 118701 ACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 | |||||||| || || || |||||||||||||||||| Sbjct 156607 ATAGTTTTGCCAGTGAGTGTCTTTACAAAAATCTGCATG 156569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433475309682028