Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq5442 127 3e-24 seq2773 87.8 3e-12 SEQ58356 86.0 9e-12 >seq5442 Length=246257 Score = 127 bits (140), Expect = 3e-24 Identities = 145/195 (74%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 10499 AGCTGGAGTAATTGACGAAGATTATAGAGGAAATGTGGGAGTAATATTATTTAATCATTC 10558 |||||| || || || |||||||||||||||||||| ||||| ||||||| ||||| || Sbjct 104968 AGCTGGTGTCATAGATGAAGATTATAGAGGAAATGTTGGAGTTGTATTATTCAATCACTC 104909 Query 10559 TAATGAAGATTTTATAATAAATAGAGGAGATAGAATATCTCAATTAATATGTGAAAAAAT 10618 |||| || ||| | | || | ||| |||||||| ||||| |||||||||||||||| Sbjct 104908 AGATGATGACTTTGTGGTTAAAAAAGGTGATAGAATTGCTCAACTAATATGTGAAAAAAT 104849 Query 10619 TTTATATCCTAAAATGTTAAAAGTCGATAGTTTATCAGAAACAAAAAGATCTGATTTTGG 10678 || || || | || | |||| | | | | ||||| || |||||| | ||| || Sbjct 104848 TTACTACCCCGAGCTGATGGAAGTAGCCAATCTTTCAGATACTAAAAGAGCAGATGGAGG 104789 Query 10679 TTTTGGATCTACTGG 10693 ||||| || || || Sbjct 104788 GTTTGGTTCAACAGG 104774 >seq2773 Length=85211 Score = 87.8 bits (96), Expect = 3e-12 Identities = 107/141 (76%), Gaps = 4/141 (3%) Strand=Plus/Minus Query 146049 TTCCACCTC-TAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATC 146106 ||||||||| |||| | ||||||||| || | |||||||| ||| || || || ||||| Sbjct 66850 TTCCACCTCGTAAG-CGTAATACCAAGTGAAGCGTAGATTCCTTTTGA-ATGTTGTAATC 66793 Query 146107 TGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGG 146166 || || || | | ||| |||| ||||||||||||||| || | || || || || || Sbjct 66792 AGACAGTGTACGCCCATCTTCTAGTTGTTTTCCAGCAAAGATGAGTCGCTGTTGGTCTGG 66733 Query 146167 AGGAATTCCTTCTTTATCTTG 146187 ||| || ||||| || || || Sbjct 66732 AGGGATGCCTTCCTTGTCCTG 66712 >SEQ58356 Length=38410 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||| | || || || | ||| || ||||| || || ||||| || || || Sbjct 35040 CCTCCTCTTAACCTCAACACAAGATGCAATGTAGACTCCTTCTGAATATTGTAGTCGGAT 35099 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | || | || ||| || | ||||| |||||||| ||||| | |||||||||||| ||| Sbjct 35100 AATGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAGATCAAACGTTGCTGATCCGGTGGA 35159 Query 146171 ATTCCTTCTTTATCTTG 146187 || || ||||||||||| Sbjct 35160 ATACCCTCTTTATCTTG 35176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 742902218881280