Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value SEQ58105 93.3 4e-14 >SEQ58105 Length=99015 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 16286 AATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCA 16345 || || | ||| ||||| ||||| || || || | |||||| |||| ||||| || Sbjct 17290 AAAGTCAAACCAGGCATGAGTCCACGCTTCTTTAACCAAAAGATAGAAGCAAAACTGCCT 17231 Query 16346 GAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAttt 16405 || || || ||||| || || || |||||||| || | || || || | ||| | || Sbjct 17230 GAGAAAAAAATACCCTCTACCGCTGCAAATGCTACAATACGTTCTCCAAATGTTGCAGTT 17171 Query 16406 ttactttctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCT 16465 || ||| | ||||||| | ||||| | ||| || | ||||||||| || | ||| Sbjct 17170 TTGCTTGCAATCCATTGTAGGGCCCAGTCTGCCTTCTTTTTAACACAAGGCAAAGTTTCT 17111 Query 16466 ATTGCATTAAATAA 16479 || ||||||||||| Sbjct 17110 ATAGCATTAAATAA 17097 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 15886 TTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTTT 15945 |||||| ||| ||| | | |||||||||||| | || | ||| ||| | ||| Sbjct 18324 TTAAAACTCAGCATCCAATGTAAACACATTATCCTCAGGATCAGCCATTACTCCCCATTT 18265 Query 15946 TTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTC 16005 || ||||||| ||| |||| ||||||||||| || ||||||||||| || || | Sbjct 18264 CTGGTATTCACCTACTTTCTTCTCAAAGAAATTGGTCTTTCCTTCTAAAGAGATGAGGTT 18205 Query 16006 CATAAAATCAAAAGGATTTTTTG 16028 |||||| ||||| ||||| |||| Sbjct 18204 CATAAAGTCAAATGGATTCTTTG 18182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462123726957400