Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq5513 194 1e-44 SEQ21942 161 8e-35 seq2773 122 7e-23 seq2744 100 2e-16 seq4618 86.0 5e-12 >seq5513 Length=124375 Score = 194 bits (214), Expect = 1e-44 Identities = 549/833 (66%), Gaps = 68/833 (8%) Strand=Plus/Minus Query 12871 CTGACTTGCGATTGGAAGAAGTGCGTTTGAACACCTTTGAGAAGTGGCCTGTGTCGTTTT 12930 ||||| |||| ||||||| ||| | || || || || ||||||||||| || ||| Sbjct 11201 CTGACATGCGCCGTGAAGAAGAGCGACTCAAAACTTTCGATAAGTGGCCTGTTTCATTTA 11142 Query 12931 TGTCGCCGGAAACCATGGCTAAAAATGGGTTTTACTACTTGGGTAGGAGCGACGAGGTGC 12990 | | || ||| | | |||||||| || || ||||| | ||| || |||| || |||| Sbjct 11141 TCACACCTGAACGCTTAGCTAAAAACGGATTCTACTATCTAGGTCGGGGCGATGAAGTGC 11082 Query 12991 GTTGTGCGTTTTGTAAAGTGGAGATAATGCGTTGGAAGGAGGGCGAAGATCCCGCTGCCG 13050 | || || || || ||||| || || ||| | ||| ||| ||||| ||||| |||| | Sbjct 11081 GCTGCGCTTTCTGCAAAGTCGAAATCATGAGATGGGTGGAAGGCGACGATCCTGCTGTAG 11022 Query 13051 ACCATAAGAAGTGGGCTCCCCAATGTCCGTTTGTGAAGGGTATCGACGTG------TGCG 13104 ||||| | | |||||| || ||||||||||| | | | ||| | || ||| Sbjct 11021 ACCATCAAAGGTGGGCACCTCAATGTCCGTTCCTAA--GACATCAAGCTGGCAATGTGCC 10964 Query 13105 GTTCGATTGT--TACAACCAAT----------AATATCCAA-AATA----CTACAACCCA 13147 | | || | |||| | | ||| | || || | | ||||| || Sbjct 10963 GATGGAATCGCCTACATCTGACGGCCGTGACGAATGTGGAACAAGAGCGCCAACAACTCA 10904 Query 13148 CGA--CAC-TAT-----TATCG-GTCCCGCTCACCCCAAATACGCCCATGAAGCTGCTCG 13198 | ||| ||| || | | |||||||||||| ||| || |||||||| || Sbjct 10903 AGCTGCACCTATCCATATACCACGACCCGCTCACCCCCGATATGCATCCGAAGCTGCCCG 10844 Query 13199 AGTCAAGAGTTTTCACAACTGGCCCCGTTGTATGAAGCAGAGACCCGAGCAGATGGCGGA 13258 || | ||| | | ||||| || ||||| || | || ||| || | || || Sbjct 10843 TCTCCGTACATTTGTCGATTGGCCTCGCAGTATGCGCCAAAAGCCTGAGGAGCTAGCCGA 10784 Query 13259 TGCCGGTTTCTTCTACACTGGCTACGGTGACAATACAAAGTGCTTCTATTGTGACGGCGG 13318 || ||||||||||||||||| | || ||||| || || ||||||| |||||||| || Sbjct 10783 AGCTGGTTTCTTCTACACTGGTCAAGGAGACAAAACGAAATGCTTCTTCTGTGACGGTGG 10724 Query 13319 ATTGAAAGATTGGGAGCCGGAAGATGTACCTTGGGAACAGCATGTAAGATGGTTCGACCG 13378 ||||| |||||||| || ||| | || ||||| || |||| | | |||||||| || Sbjct 10723 TTTGAAGGATTGGGAAAATGACGATATTCCCTGGGAGCAACATGCACGTTGGTTCGATCG 10664 Query 13379 TTGCGCCTACGTTCAGCTAGTCAAGGGTAGAGACTACGTACAGAAAGTCATCACGGAAGC 13438 || |||||||| || || ||||| || |||| || || || || || || ||||| Sbjct 10663 ATGTGCCTACGTCCAACTTGTCAAAGGACGAGAGTATGTTCAAAAGGTTATATCGGAA-- 10606 Query 13439 CTGCGTGTTACCCGGTGAGAACACTACCGTGTCAACAGCCGCGCCAGTGTCCGAGCCTAT 13498 |||||| | || || || |||| | || || | | || | | | ||| | Sbjct 10605 --GCGTGT---GCTGT-AGCAC-CTAC----TAAAGAG--GAGAAAGAGAC--ACCCTCT 10561 Query 13499 A--CCTGAGACAAAAATTGAA---AAAGAGCCCCAAGTGGAAGATTCG------------ 13541 | |||| | | | || ||| ||| || | |||| ||| || || Sbjct 10560 ACCCCTGCGCCTAGTATAGAAAACAAAAAGGACGAAGTCGAAAATACGATAGAAGACACA 10501 Query 13542 AAACTGTGCAAGATATGCTACGTAGAAGAGTGCATCGTGTGCTTCGTACCGTGCGGTCAC 13601 ||| | || |||||||||| ||| ||||| ||| ||| || ||||| || || || ||| Sbjct 10500 AAATTATGTAAGATATGCTTCGTGGAAGAACGCAACGTTTGTTTCGTGCCCTGTGGCCAC 10441 Query 13602 GTGGTGGCGTGTGCCAAGTGTGCGTTGAGTGTAGATAAGTGTCCGATGTGTCG 13654 | ||||| || || |||||||| ||| ||||| || || |||||||| Sbjct 10440 ATAGTGGCCTGCGCAAAGTGTGCTTTGTCCACTGATAAATGCCCTATGTGTCG 10388 >SEQ21942 Length=42535 Score = 161 bits (178), Expect = 8e-35 Identities = 629/975 (65%), Gaps = 19/975 (2%) Strand=Plus/Minus Query 6369 CAATCTCCCTGTAGTCCACCACACCCTCCTCCCAAGTGCCTTTCACTTTACCCGTCGCCA 6428 |||| || |||||||| |||||||| |||| ||| || ||||| ||| || || | Sbjct 35570 CAATTTCTCTGTAGTCGACCACACCATCCTGCCACGTCCCTTTACAAGGACCTGTGGCTA 35511 Query 6429 CCCCACTAAACAGATTGTTGTTCGTGTAATTCGTCACACCCGACCACCCCCTGCCGTACA 6488 | ||| | || |||| || | ||||| || || || | ||| || | ||||||| Sbjct 35510 CTCCAGTGAAAGGATTATTATCTGTGTAGTTTTGGACTCCAGTCCAACCACGACCGTACA 35451 Query 6489 TAGCCACCCCCACCACCAACTTGCCACTGTTCACACTCTGGTTCAACAAACGCCTCAACG 6548 | || || || || | | ||| | ||| || | ||| || | | | | Sbjct 35450 TCGCTACACCAACTATAATCTTCTTAGGGTTGACTCCTTGGGCTAAGAGATTTTTAACTC 35391 Query 6549 CAAAGTCTGTGGTGTAGTTTTCGTGGGTTTTCCACGACGGTGGATACAGAGGTGCGTGGT 6608 ||||||| || |||||| |||| | | ||||| | |||| ||| | |||| || | Sbjct 35390 CAAAGTCAGTTGTGTAGGTTTCTTTTGGATTCCATGCTGGTGCATATAACGGTGTTTGAT 35331 Query 6609 AGCCCAGATCCGTCATC-GACCACGCACCCTTGTAATCGTAGTTCATCACGAAAATGTAG 6667 || ||| ||||| |||||||| || || | ||||| |||| | || || | Sbjct 35330 GTCCAAGAGT-GTCATTTGACCACGCTCCTTTAAAGTCGTAACTCATTAAAAAGATATGA 35272 Query 6668 TCGAGATACTGTTGGCACTGTTTGTAGTCGACCACGTCTATCTTGTCGTAACCACCGCTG 6727 || | ||| || || | |||| || || || | ||||| || ||||| | || Sbjct 35271 TCCATATATTGCTGAGCTTTCCTGTAATCAACTACTTGGATCTTATCCCAACCAGCACTA 35212 Query 6728 ATGGCGCTCGTCAACTGCAATCTCCGGCCCGTCTTCTCCTCCAGCTCGTCCAACATTTGT 6787 || ||| |||| | || || || |||| | ||||||| || ||||| Sbjct 35211 ATAGCGGATGTCAGTTCATATTTCTTACCGGTCTCCGTGGATAGCTCGTTCAGCATTTCA 35152 Query 6788 CTCAAATCGCTCAGCAGCTGTACATAGGTGTACTTGTCGGTG-TCAGCATCGCCCAACTT 6846 | || || ||| |||||| ||||| |||| | || | | | || | || Sbjct 35151 CGTAACTCTTTCATCAGCTGGACATAA----ACTTCACCGTCATTTGGTCCACCGAGGTT 35096 Query 6847 GTCGTTCGCTCCCTTTCCTCCCGGAAACTCCCAGTCAATATCCACTCCGTCGAAAAACTT 6906 || || || ||||| || || |||||||| ||||| || || |||||||| || || Sbjct 35095 AGGATTAGCACCTTTTCCACCAGGGAACTCCCAATCAATGTCAACACCGTCGAAGAATTT 35036 Query 6907 CCACGTCTCCAGAAACTCGCGCACGCTCTGCACAAACACCCGA---CGCTTGGCGGAGTC 6963 ||| || | || || || ||| |||||| ||| | || | || Sbjct 35035 CCAAGTTTGGAGGAAGTCTTTCACTGATGCCACAAAA---CGATCTCTTTTTACCTTATC 34979 Query 6964 GTGCATCTTGTAGAAGGGGTC-GCTAAGCGTCCACCCGCCTATGGAGGGTAGTATAGTCA 7022 | | |||||| || || || || ||||| || || || || || || | ||| Sbjct 34978 ATCAAAGAAGTAGAATGGATCTGCCAAT-GTCCAGCCCCCGATTGATGGAAGAACCTTCA 34920 Query 7023 GATTGGGGTTGTGGTGTTTGATGGCCATCAGCTGGCCAAAATTACCCTTATACGGCTCGT 7082 ||| || | ||||| | | |||||| || ||||| || || || || || |||| Sbjct 34919 GATCAGGTCTAGCTTGTTTTAAAGACATCAGTTGTCCAAAGTTGCCTTTGTAAGGTTCGT 34860 Query 7083 CGTACGCCTCCACACCCTTTTGTGGTTTCTGTACGGCGCCCCACAAATCGTGTATACTCA 7142 | | || |||||| |||||||| |||| || |||| ||||| ||| | Sbjct 34859 TCCAGGAGGACAAACCCTTCTGTGGTTTTTGTAAAGCTGCCCAAGGGTCGTGGATAGAAA 34800 Query 7143 CTTTGAAATCGTCTCGGCCCGC-GCACGATCTTTGCAACGCTTC-AAACGACCCCGGCAC 7200 ||||||| || ||||| ||||| ||| |||| |||||| |||| |||| || | | Sbjct 34799 CTTTGAAGTCCTCTCG-CCCGCTGCAAGATCGTTGCAAAGCTTGGAAACTTCCTTCG-AT 34742 Query 7201 CTGTTTCAAGGCGTCGTTGAGTCCGTCTCCCCCGCAAATGGGCACAAATCCGTACAGCAA 7260 | |||||| |||||| | |||||| || || || ||||| | ||||||||| || | Sbjct 34741 TTCTTTCAAACTGTCGTTAATTCCGTCACCGCCACAGATGGGGATAAATCCGTAAAGAAG 34682 Query 7261 ATGGCTGAGATTGGGCACGGGCACCTTGTCTGCGGGAAACTGCCGTCCGTACACACCCCA 7320 ||| | ||||| || | ||| ||||| ||| | || || | | ||| |||||||| Sbjct 34681 ATGTGTAAGATTCGGAATGGGTACCTTATCTACTGGGAATTTTCTAGGGTAAACACCCCA 34622 Query 7321 CTCCACAAAGTACGC 7335 ||||||||| || || Sbjct 34621 CTCCACAAAATAAGC 34607 >seq2773 Length=85211 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||||| || | |||||||||||| ||||| ||||| ||||||||||| || | Sbjct 66848 CCACCTCGTAAGCGTAATACCAAGTGAAGCGTAGATTCCTTTTGAATGTTGTAATCAGAC 66789 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 ||| || | || || ||||||||||| || || || | ||||||||||| ||||| Sbjct 66788 AGTGTACGCCCATCTTCTAGTTGTTTTCCAGCAAAGATGAGTCGCTGTTGGTCTGGAGGG 66729 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || ||||||||| ||||| ||||| | | | | || | || || Sbjct 66728 ATGCCTTCCTTGTCCTGGATTTTGGCTTTAACATTCTCAATTGTATCTGAAGGTTCAACT 66669 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| ||||| |||||||| ||||| || |||||||| |||||||| Sbjct 66668 TCCAAAGTAATAGTCTTGCCTGTCAGTGTTTTCACAAAAATTTGCAT 66622 Score = 105 bits (116), Expect = 5e-18 Identities = 163/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||||| || | |||||||||||| ||||| ||||| ||||||||||| || | Sbjct 66392 CCACCTCGTAAGCGTAATACCAAGTGAAGCGTAGATTCCTTTTGAATGTTGTAATCAGAC 66333 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 ||| || | || || || ||||| || ||||| || | ||||| || |||||||| Sbjct 66332 AGTGTACGCCCATCTTCAAGCTGTTTCCCTGCGAAGATAAGACGCTGCTGATCGGGAGGG 66273 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||| || |||||| |||||| || || | | | ||| ||| ||| Sbjct 66272 ATACCTTCTTTGTCCTGAATTTTAGCTTTTACATTTTCAATTGTATCCGATGGCTCAACC 66213 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTGCC 45342 |||| ||| || || || || || || ||||||||||| || ||||| || || Sbjct 66212 TCCAAGGTTATGGTTTTTCCAGTGAGTGTCTTCACAAATATCTGCATTTTTCC 66160 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||||| || | | || | ||| || ||| ||| || |||||||||||||| Sbjct 67076 CCACCTCGCAGACGGAGAACAAGGTGAAGAGTGGACTCTTTTTGAATGTTGTAGTCAGAG 67017 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || || | || |||||||| ||||| || || || | ||||||||||| ||||| Sbjct 67016 AGGGTTCGCCCATCTTCCAGTTGCTTTCCAGCAAAGATAAGTCGCTGTTGGTCTGGAGGG 66957 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || ||||||||| ||||| ||||| | | | | || | || || Sbjct 66956 ATGCCTTCCTTGTCCTGGATTTTGGCTTTAACATTCTCAATTGTATCTGAAGGTTCAACT 66897 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| ||||| ||||| || || |||||||| |||||||||||||| Sbjct 66896 TCCAAAGTAATGGTCTTTCCAGTAAGAGTCTTGACAAAGATTTGCAT 66850 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||||| || | | ||| | ||| || || ||| || ||||| |||||||| | Sbjct 67304 CCACCTCGCAGACGCAGTACAAGGTGAAGAGTCGACTCTTTTTGAATATTGTAGTCAGAC 67245 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || || | || |||||||| ||||| || || || | ||||||||||| ||||| Sbjct 67244 AGGGTTCGCCCATCTTCCAGTTGCTTTCCAGCAAAGATAAGTCGCTGTTGGTCTGGAGGG 67185 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || ||||| ||| ||||| || || | | | ||||| | || || Sbjct 67184 ATGCCTTCCTTATCCTGGATTTTGGCTTTGACATTCTCAATTGTGTCCGAAGGTTCAACT 67125 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| ||||| ||||||||||| || || |||||||| |||||||| Sbjct 67124 TCCAAAGTAATGGTCTTGCCCGTTAGTGTTTTCACAAAAATTTGCAT 67078 >seq2744 Length=156805 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||||||||| | |||||| || || ||| || || || ||||||||||| Sbjct 156796 CCACCTCTCAATCTCAGTACCAAATGGAGTGTGGATTCTTTTTGGATGTTGTAGTCAGAG 156737 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 ||| ||| | || || || || || || || || || | || ||| ||||| || || Sbjct 156736 AGTGTACGACCATCTTCAAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGGTCTGGCGGG 156677 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | |||||| ||||| |||||| ||| || | | |||| | || ||| Sbjct 156676 ATACCCTCTTTGTCTTGAATTTTAGCCTTTACATTTTCAATAGTGTCTGAAGGTTCTACC 156617 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 || | |||||| || ||||| || || ||||| ||||| || |||||||| Sbjct 156616 TCTAGGGTAATAGTTTTGCCAGTGAGTGTCTTTACAAAAATCTGCATGTT 156567 >seq4618 Length=10119 Score = 86.0 bits (94), Expect = 5e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||||||||| | |||||| || || ||| || ||||| || |||||||| Sbjct 200 CCACCTCTCAATCTCAGTACCAAATGGAGTGTGGATTCTTTCTGGATATTGTAGTCCGAG 141 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 ||| ||| | || || || || || ||||| || || | || ||| ||||| ||||| Sbjct 140 AGTGTGCGGCCATCTTCAAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCTGGAGGG 81 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAAC 45261 | |||||| ||||| ||||| |||||| Sbjct 80 ATACCCTCTTTGTCTTGGATTTTAGCCTTAAC 49 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||||||||| | |||||| || || || || || || || |||||||| Sbjct 428 CCACCTCTCAATCTCAGTACCAAATGGAGTGTAGATTCTTTTTGGATATTGTAGTCCGAG 369 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 ||| ||| | || || || ||||| || || || || | || ||| ||||| || || Sbjct 368 AGTGTGCGGCCATCTTCAAGCTGTTTGCCCGCAAAGATGAGCCTCTGCTGGTCTGGTGGG 309 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | |||||| ||||| |||||| |||||| | | | |||| ||| || Sbjct 308 ATACCCTCTTTGTCTTGAATTTTGGCCTTAACATTTTCAATGGTGTCTGATGGCTCAACT 249 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | || || || ||||| |||| ||||| || || |||||||| Sbjct 248 TCAAGAGTGATGGTTTTGCCAGTCAAGGTCTTGACGAAAATTTGCAT 202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394751830825339