Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value SEQ58105 122 8e-23 >SEQ58105 Length=99015 Score = 122 bits (134), Expect = 8e-23 Identities = 163/225 (72%), Gaps = 4/225 (2%) Strand=Plus/Minus Query 14226 CCTCATCTCTACTAATAAGTTCGTT--TGAAAATGTTAATCCTGGCATCAATCCTCGttt 14283 |||||||||| |||||| || || ||||| || || || ||||| | ||| || || Sbjct 17319 CCTCATCTCTTGAAATAAGCTCATTACTGAAA--GTCAAACCAGGCATGAGTCCACGCTT 17262 Query 14284 ttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAA 14343 ||||||||||| || | ||| || || || || || || ||||| || || ||||| Sbjct 17261 CTTTAACCAAAAGATAGAAGCAAAACTGCCTGAGAAAAAAATACCCTCTACCGCTGCAAA 17202 Query 14344 CGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTC 14403 |||| | ||||||||||| | ||| ||||| | | ||||||| | ||||| || Sbjct 17201 TGCTACAATACGTTCTCCAAATGTTGCAGTTTTGCTTGCAATCCATTGTAGGGCCCAGTC 17142 Query 14404 AGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAA 14448 | || ||||||| | || || ||||| |||||||||||||| Sbjct 17141 TGCCTTCTTTTTAACACAAGGCAAAGTTTCTATAGCATTAAATAA 17097 Score = 105 bits (116), Expect = 6e-18 Identities = 156/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 14473 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTG 14532 ||||||||| ||||| | || | |||||||||||||| | |||||||| ||||| || Sbjct 16460 AATGTATGTGTCAATTAATAGGGAGTACATTTCAGAGTGAACATTTTCCATGGCTATTTG 16401 Query 14533 AAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAA 14592 || ||||| || |||| || || | ||| |||||| |||||| || | | Sbjct 16400 GAACCCATAGAAGAATCTGGCCTCAGTAACTTGAACCTCTTGTGAAAATCGCTCCACTAG 16341 Query 14593 ATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTA 14652 ||||||||| || || |||||| || ||||||||||| | | || |||||| || | Sbjct 16340 ATTTTCATTGACAATTCCATCAGATGCAGCAAAAAATGCTAGAACGTGTTTAATGAAATG 16281 Query 14653 TTGCTCTTCATTGCTGAGTTTTTTCCAATCGGCTAAATCCT 14693 | ||| || | | ||| |||||| | |||||||| Sbjct 16280 TCTCTCACAATCCTTTAAACTTTCCCAATCCGGTAAATCCT 16240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 481940676898120