Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value SEQ21942 280 1e-70 seq2773 113 3e-20 seq5513 111 1e-19 seq4618 105 5e-18 seq2744 93.3 3e-14 >SEQ21942 Length=42535 Score = 280 bits (310), Expect = 1e-70 Identities = 700/1057 (66%), Gaps = 16/1057 (2%) Strand=Plus/Minus Query 90991 TAGTCAACGACTCCATCTTCCCACGTGCCCGTAACCGGACCGTTAGCGACACCATCAAAA 91050 ||||| || || ||||| | |||||| || || ||||| | || || ||| ||| Sbjct 35559 TAGTCGACCACACCATCCTGCCACGTCCCTTTACAAGGACCTGTGGCTACTCCAGTGAAA 35500 Query 91051 TAGTTATCACCTTTGTAATCAGACACGCCTGTCCAGCCGCGCCCGTACATGGCGACACCA 91110 |||| | || |||| | || || ||||| || || |||||||| || |||||| Sbjct 35499 GGATTATTATCTGTGTAGTTTTGGACTCCAGTCCAACCACGACCGTACATCGCTACACCA 35440 Query 91111 ATAATTATTTTACTAGAATCAACACCTTGTTTTGTGAGCATTTGCACGGCATGATGCGTG 91170 | || || || ||| | || ||||| | ||| ||| || || | || Sbjct 35439 ACTATAATCTTCTTAGGGTTGACTCCTTGGGCTAAGAGATTTTTAACTCCAAAGTCAGTT 35380 Query 91171 GTGTACAACTCGTTCGGGTTCCATTGCGGGGCGTATAGTGTCGTTTGATAGCCCAAATCG 91230 ||||| || || || |||||| || || |||| | ||||||| || | | | Sbjct 35379 GTGTAGGTTTCTTTTGGATTCCATGCTGGTGCATATAACGGTGTTTGATGTCCAAGAGTG 35320 Query 91231 GTATTTGACCAAGCTCCTTTAAAATCGTAAGTCATGACATATATTTTACTCAAAAACTTT 91290 ||||||||| ||||||||||| |||||| |||| | | | || | | || | | | Sbjct 35319 TCATTTGACCACGCTCCTTTAAAGTCGTAACTCATTAAAAAGATATGATCCATATATTGC 35260 Query 91291 TGTGCAGCGTCATAATCGACAAGTTCGATCTTGTCATAACCGGCACCGATTGCGCTTGTC 91350 || || ||||| || | || |||||| || |||| |||| || ||| |||| Sbjct 35259 TGAGCTTTCCTGTAATCAACTACTTGGATCTTATCCCAACCAGCACTAATAGCGGATGTC 35200 Query 91351 AATTCGTACACTTTACCTGTTTGTGCTTGCAAA--TCATCCAACATGTCACGCAACTCTT 91408 | ||| || ||||| || | | || | | || | || ||| ||||| ||||||| Sbjct 35199 AGTTCATATTTCTTACCGGTCTCCG--TGGATAGCTCGTTCAGCATTTCACGTAACTCTT 35142 Query 91409 TTAGCAAAACAATGTATGTAGCAGCGTCGCGTTTCGGATCGCCAATGGCCGGATTAGCGC 91468 | | || | || || |||| || || | || | | |||||||| | Sbjct 35141 TCATCAGCTGGACATAAACTTCACCGTCA---TTTGGTCCACCGAGGTTAGGATTAGCAC 35085 Query 91469 CTTTACCGCCCGGAAATTCCCAATCAATATCTACACCGTCAAAAAATTTCCAAACTTGCA 91528 |||| || || || || ||||||||||| || |||||||| || ||||||||| ||| | Sbjct 35084 CTTTTCCACCAGGGAACTCCCAATCAATGTCAACACCGTCGAAGAATTTCCAAGTTTGGA 35025 Query 91529 AAAATTCTTTAACCGAATCAACGAACACGTTTCTTCGTTTGAC---ATCGTGCATAAAAT 91585 || ||||| || || | || || ||| | || ||| || ||| | | || | Sbjct 35024 GGAAGTCTTTCACTGATGCCACAAA-ACGATC--TCTTTTTACCTTATCATCAAAGAAGT 34968 Query 91586 AGAACGGGTCCGACAAAGTCCAGCCACCGATGGACGGTAAAACTTTTAAATGCGGGTTGG 91645 |||| || || | ||| |||||||| ||||| || || | ||| || | || || | | Sbjct 34967 AGAATGGATCTGCCAATGTCCAGCCCCCGATTGATGGAAGAACCTTCAGATCAGGTCTAG 34908 Query 91646 CCAACTTGGCGGCCATTATCTGACCAAAGTTGCCCTTGTAAGGCTCGTTCCAAGCGGATA 91705 | || | ||| | || ||||||||||| |||||||| |||||||| | ||| | Sbjct 34907 CTTGTTTTAAAGACATCAGTTGTCCAAAGTTGCCTTTGTAAGGTTCGTTCCAGGAGGACA 34848 Query 91706 CACCTTTTTGTGGTTTTTGTATGGCTGCCCACGGATCGTGTATGGAAACTTTAAAATCAT 91765 ||| || ||||||||||||| |||||||| || ||||| || |||||||| || || | Sbjct 34847 AACCCTTCTGTGGTTTTTGTAAAGCTGCCCAAGGGTCGTGGATAGAAACTTTGAAGTCCT 34788 Query 91766 CGCGTCCTTTGCACGATCGTTGCAAATTTTCAAAACTACCAGGTATTGTTTTGAGGGCAT 91825 | || || |||| |||||||||||| || ||||| || ||| ||| | | Sbjct 34787 CTCGCCCGCTGCAAGATCGTTGCAAAGCTTGGAAACTTCCTTCGATTTCTTTCAAACTGT 34728 Query 91826 CGTTTAATCCATCGCCTCCGCAAATGGGTATAAAACCGTACAACAGATGGGACAAATTTG 91885 |||| | ||| || || || || ||||| ||||| ||||| | ||||| | | ||| | Sbjct 34727 CGTTAATTCCGTCACCGCCACAGATGGGGATAAATCCGTAAAGAAGATGTGTAAGATTCG 34668 Query 91886 GCAGCGGCACCTTGTCGATTGGAAAGTTGCGTCCGTACACGCCCCATTCAACAAAGTACG 91945 | | || ||||| || | ||| || || | ||| || ||||| || ||||| || | Sbjct 34667 GAATGGGTACCTTATCTACTGGGAATTTTCTAGGGTAAACACCCCACTCCACAAAATAAG 34608 Query 91946 ---CGGCGACGGTCGCGTTATTGCGTCTACCAGGTTTGTTGTTTTCTCGCCAAACATATT 92002 || |||| || | | | || || ||| ||||| || ||| | || | | | Sbjct 34607 CTCCGACGACTTTCCCTGAAGTTTGTTTAAAAGGCTTGTTTTTCTCTAGAAAACTAAAGT 34548 Query 92003 CTAGCGGAGTCAAATGACCACCGTCAGTGTCAGCGAC 92039 |||| || | | ||| | ||| ||||| ||||| || Sbjct 34547 CTAGAGGTGGTAGATGGCTACCATCAGTATCAGCTAC 34511 >seq2773 Length=85211 Score = 113 bits (124), Expect = 3e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || || || | ||||| | |||||| || || ||||||||||| |||||||| | Sbjct 67305 TCCACCTCGCAGACGCAGTACAAGGTGAAGAGTCGACTCTTTTTGAATATTGTAGTCAGA 67246 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 || ||| | |||||||| ||| || || ||| ||||||||| ||||| || || Sbjct 67245 CAGGGTTCGCCCATCTTCCAGTTGCTTTCCAGCAAAGATAAGTCGCTGTTGGTCTGGAGG 67186 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGG 18276 | |||||||||||| |||| | || ||||| | ||| ||||| || || Sbjct 67185 GATGCCTTCCTTATCCTGGATTT-TGGCTTTGACATTCTCAATTGTGTCCGAAGGTTCAA 67127 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | || ||| | ||||| || | |||||| |||||||||||||| Sbjct 67126 CTTCCAAAGTAATGGTCTTGCCCGTTAGTGTTTTCACAAAAATTTGCAT 67078 Score = 95.1 bits (104), Expect = 9e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || |||| | | ||||| |||||| || ||||| |||||||||||||| || | Sbjct 66849 TCCACCTCGTAAGCGTAATACCAAGTGAAGCGTAGATTCCTTTTGAATGTTGTAATCAGA 66790 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 || ||| | |||||| | |||||| || ||| |||| |||| ||||| || || Sbjct 66789 CAGTGTACGCCCATCTTCTAGTTGTTTTCCAGCAAAGATGAGTCGCTGTTGGTCTGGAGG 66730 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGG 18276 | ||||||||| || |||| | || || || | ||| || || || || Sbjct 66729 GATGCCTTCCTTGTCCTGGATTT-TGGCTTTAACATTCTCAATTGTATCTGAAGGTTCAA 66671 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | || || | ||||| |||| |||||| |||||||||||||| Sbjct 66670 CTTCCAAAGTAATAGTCTTGCCTGTCAGTGTTTTCACAAAAATTTGCAT 66622 Score = 84.2 bits (92), Expect = 2e-11 Identities = 160/233 (69%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || |||| | | ||||| |||||| || ||||| |||||||||||||| || | Sbjct 66393 TCCACCTCGTAAGCGTAATACCAAGTGAAGCGTAGATTCCTTTTGAATGTTGTAATCAGA 66334 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 || ||| | |||||| | ||||| || || ||||||| | || ||||| || Sbjct 66333 CAGTGTACGCCCATCTTCAAGCTGTTTCCCTGCGAAGATAAGACGCTGCTGATCGGGAGG 66274 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGG 18276 | ||||| || || ||||| | || || || | | ||| || || ||||| Sbjct 66273 GATACCTTCTTTGTCCTGAATTT-TAGCTTTTACATTTTCAATTGTATCCGATGGCTCAA 66215 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTT 18329 || | ||| ||| |||| || || | ||| || ||||| || ||||||||| Sbjct 66214 CCTCCAAGGTTATGGTTTTTCCAGTGAGTGTCTTCACAAATATCTGCATTTTT 66162 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || || | |||||| || || |||||||||||||||||||| | || || | |||| Sbjct 66605 AGAACAAGGTGAAGAGTAGACTCTTTTTGAATGTTGTAGTCAGACAGGGTACGTCCATCT 66546 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| ||| ||||| ||| | || || | ||| || ||| || | |||||| || || Sbjct 66545 TCCAGTTGCTTGCCAGCAAAAATGAGCCGTTGCTGGTCCGGAGGGATGCCTTCTTTGTCT 66486 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 |||| ||| || | | | | ||| || ||||| ||| | ||| || | Sbjct 66485 TGGATTTTCGCCTTTACGTTTTCGATAGTATCTGATGGCTCTACTTCTAAGGTAATCGTC 66426 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || || || | ||||| ||||| ||||||||| Sbjct 66425 TTACCTGTGAGAGTTTTAACAAAGATTTGCATT 66393 >seq5513 Length=124375 Score = 111 bits (122), Expect = 1e-19 Identities = 174/249 (70%), Gaps = 0/249 (0%) Strand=Plus/Plus Query 20098 AACATTTTGCACATAATCACGCCCTTTGACAAGCAGCAAGTATCCACAGTTACTAAACCA 20157 ||| ||||| ||||| || || ||||||||||| | | ||| |||| | ||||| Sbjct 10615 AACCTTTTGAACATACTCTCGTCCTTTGACAAGTTGGACGTAGGCACATCGATCGAACCA 10674 Query 20158 ACGTGCGTGTTGTTCCCATGGAATGTCATCATTTTCCCAATCTTTAAGGCCGCCATTGCA 20217 |||||| ||||| ||||| ||||| || |||||||||||||| || | || || | || Sbjct 10675 ACGTGCATGTTGCTCCCAGGGAATATCGTCATTTTCCCAATCCTTCAAACCACCGTCACA 10734 Query 20218 ATAAAAACACAAAGTTTTATCACCGCGCGACGTATAATAAAATCCCGCTTCGGCCAATTC 20277 | || || ||||| || || | || || | || || |||||||| | || Sbjct 10735 GAAGAAGCATTTCGTTTTGTCTCCTTGACCAGTGTAGAAGAAACCAGCTTCGGCTAGCTC 10794 Query 20278 ATCGGGCCTTTGCTTCATGCTGCGCGGCCACCCTTCAAAAGTTTTTAAACGCGCAGCTTC 20337 || ||| |||| ||| ||||| ||||| | |||| || | ||| |||||||| Sbjct 10795 CTCAGGCTTTTGGCGCATACTGCGAGGCCAATCGACAAATGTACGGAGACGGGCAGCTTC 10854 Query 20338 TGATGCATA 20346 |||||||| Sbjct 10855 GGATGCATA 10863 Score = 102 bits (112), Expect = 6e-17 Identities = 130/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 20411 AAAGGACAATGCGGTGCCCATTTTTGGTGATCTTTCGCCGGGTCGTCGCCTTCTTGCCAA 20470 || ||||| || |||||||| |||| || ||| || || ||||||||||| ||| Sbjct 10991 AACGGACATTGAGGTGCCCACCTTTGATGGTCTACAGCAGGATCGTCGCCTTCCACCCAT 11050 Query 20471 TGCATAATTTCCACTTTGCAAAACGCACAGCGCACTTCGTCAGCGCGCCCCAAATAATAG 20530 ||| ||||| |||||||| || || ||||||||||| || | || || | ||| ||| Sbjct 11051 CTCATGATTTCGACTTTGCAGAAAGCGCAGCGCACTTCATCGCCCCGACCTAGATAGTAG 11110 Query 20531 AACCCGTTGGTCGCCATTTGCTCAGGTGTTAAAAATGTTACGGGCCAGTTTACAAAAGT 20589 || ||||| | || | | |||||||| | ||||| || ||||| || | ||||| Sbjct 11111 AATCCGTTTTTAGCTAAGCGTTCAGGTGTGATAAATGAAACAGGCCACTTATCGAAAGT 11169 >seq4618 Length=10119 Score = 105 bits (116), Expect = 5e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 18110 TCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACA 18169 ||| ||||||| || ||||| ||||||||||| || |||||||| | | ||| | Sbjct 417 TCTCAGTACCAAATGGAGTGTAGATTCTTTTTGGATATTGTAGTCCGAGAGTGTGCGGCC 358 Query 18170 ATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTT 18229 |||||| | |||||||||||| |||| || || || || || || | || || || Sbjct 357 ATCTTCAAGCTGTTTGCCCGCAAAGATGAGCCTCTGCTGGTCTGGTGGGATACCCTCTTT 298 Query 18230 ATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGAT 18289 || ||||| ||| || | | ||| ||||| ||||| ||||| ||||| Sbjct 297 GTCTTGAATTTTGGCCTTAACATTTTCAATGGTGTCTGATGGCTCAACTTCAAGAGTGAT 238 Query 18290 GCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 | ||||||| ||||| || || || ||||||||||| Sbjct 237 GGTTTTGCCAGTCAAGGTCTTGACGAAAATTTGCAT 202 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || |||| | ||| ||||||| || ||||| ||||||||||| || |||||||| | Sbjct 656 CCACCCCTCAATCTCAGTACCAAATGGAGTGTGGATTCTTTTTGGATATTGTAGTCCGAG 597 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | |||||| | || ||||| ||| |||| || || || || || || Sbjct 596 AGTGTGCGGCCATCTTCAAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCTGGTGGG 537 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | || || || || ||||| ||| || | | | | ||||| ||||| | Sbjct 536 ATACCCTCTTTGTCTTGAATTTTGGCCTTAACATTTTCGATGGTGTCTGATGGCTCAACT 477 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| ||||| ||||||| ||||| || || || ||||||||||| Sbjct 476 TCAAGAGTGATAGTTTTGCCAGTCAAGGTCTTGACGAAAATTTGCAT 430 >seq2744 Length=156805 Score = 93.3 bits (102), Expect = 3e-14 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 18110 TCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACA 18169 ||| ||||||| || ||||| ||||||||||| ||||||||||| | | ||| || Sbjct 156785 TCTCAGTACCAAATGGAGTGTGGATTCTTTTTGGATGTTGTAGTCAGAGAGTGTACGACC 156726 Query 18170 ATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTT 18229 |||||| | || || || ||| ||||||| || || || || || | || || || Sbjct 156725 ATCTTCAAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGGTCTGGCGGGATACCCTCTTT 156666 Query 18230 ATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGAT 18289 || ||||| ||| || | | ||| |||||| || || || | ||| || Sbjct 156665 GTCTTGAATTTTAGCCTTTACATTTTCAATAGTGTCTGAAGGTTCTACCTCTAGGGTAAT 156606 Query 18290 GCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 ||||||| || | ||| ||||||||||| ||||| || Sbjct 156605 AGTTTTGCCAGTGAGTGTCTTTACAAAAATCTGCATGTT 156567 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379033506817455