Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value SEQ21942 279 4e-70 SEQ58356 87.8 2e-12 >SEQ21942 Length=42535 Score = 279 bits (308), Expect = 4e-70 Identities = 661/983 (67%), Gaps = 27/983 (3%) Strand=Plus/Minus Query 35873 TTAGCAATCTGTCTGTAGTCGACCACGCCGTTTTCCCATGTACCCGTGATCGGTCCGACG 35932 || ||||| | ||||||||||||||| || | | ||| || || | || || | Sbjct 35574 TTTGCAATTTCTCTGTAGTCGACCACACCATCCTGCCACGTCCCTTTACAAGGACCTGTG 35515 Query 35933 GCTACGCCACTGAATGGATTGTCA-CTGTTGTAGTTGTGGACGCCCGTCCAACCGCGGCC 35991 ||||| ||| |||| ||||| | | |||| |||||| ||||| || |||||||| || || Sbjct 35514 GCTACTCCAGTGAAAGGATTATTATCTGT-GTAGTTTTGGACTCCAGTCCAACCACGACC 35456 Query 35992 GTACATTGCTACGCCCAACACGAGtttttttGGATTCACTCGTTGCGCGAGCAAAGCGTC 36051 |||||| ||||| || | | | || || || || |||| ||| || | | | | Sbjct 35455 GTACATCGCTACACCAACTATAATCTTCTTAGGGTTGACTCCTTGGGCTAAGAGATTTTT 35396 Query 36052 CACGGCCACGTTGGCGGTGTACGGTTCGTTAGGTTTCCACGCGGAACCGTACAGTGCCGT 36111 || | | || | ||||| | ||| || || ||||| || | | || | | || Sbjct 35395 AACTCCAAAGTCAGTTGTGTAGGTTTCTTTTGGATTCCATGCTGGTGCATATAACGGTGT 35336 Query 36112 CTGATGACCGAGATCGGTATTAGACCAAGCTCCTTTGAAATCATAACTCATCACGAAAAT 36171 ||||| || ||| | ||| ||||| |||||||| || || |||||||| | || || Sbjct 35335 TTGATGTCCAAGAGTGTCATTTGACCACGCTCCTTTAAAGTCGTAACTCATTAAAAAGAT 35276 Query 36172 TTTATCTAAATACTGTTGTGCTCGGTCGTAATTAACCGCGGCGATCTTGTCTATGCCAGC 36231 | ||| | ||| || || ||| ||||| ||| | |||||| || ||||| Sbjct 35275 ATGATCCATATATTGCTGAGCTTTCCTGTAATCAACTACTTGGATCTTATCCCAACCAGC 35216 Query 36232 GCTAATCGCTGTGGTGAGTTCTAAAGTACGATTCGTT-----TGTATTTGAACTTGATCG 36286 ||||| || | || ||||| | | | | || | || || | || | || Sbjct 35215 ACTAATAGCGGATGTCAGTTC-ATATTTCTTACCGGTCTCCGTGGAT---AGCTCGTTC- 35161 Query 36287 AGCATGGCGCGCAATTCGCCCAATAAAGCGATATACGTGTTATTGTCGCGT--TCCACAT 36344 ||||| | || || || || | || ||| | | ||| | ||||| Sbjct 35160 AGCATTTCACGTAACTCTTTCATCAGCTGGACATAAACTTCACCGTCATTTGGTCCAC-- 35103 Query 36345 CGCCAACGTTTGGATTGGCGCCTTTGCCGCCCGGAAATTCCCAATCAATATCGATGCCGT 36404 | | ||| ||||| || ||||| || || || || ||||||||||| || | |||| Sbjct 35102 ---CGAGGTTAGGATTAGCACCTTTTCCACCAGGGAACTCCCAATCAATGTCAACACCGT 35046 Query 36405 CGAAAAATTTCCATGTCAACACAAATTCACGCACGGATTCGACAAAAATTTGTCGCGTTC 36464 |||| |||||||| || | || || ||| ||| | |||||| | || || Sbjct 35045 CGAAGAATTTCCAAGTTTGGAGGAAGTCTTTCACTGATGCCACAAAACGATCTCTTTTTA 34986 Query 36465 GCGCATCGTGCATATGA-TAGAAGGGATCGGACAGTGTCCAACCGCCGATTGATGCCAAC 36523 | ||| | || | | ||||| ||||| | || |||||| || |||||||||| | Sbjct 34985 CCTTATCAT-CAAAGAAGTAGAATGGATCTGCCAATGTCCAGCCCCCGATTGATGGAAGA 34927 Query 36524 ACTTTTAGATTGGGATTGGCCAATTTTGCTGCCATTAATTGACCAAAATTGCCTTTGTAG 36583 || || |||| || | || |||| | ||| | ||| ||||| ||||||||||| Sbjct 34926 ACCTTCAGATCAGGTCTAGCTTGTTTTAAAGACATCAGTTGTCCAAAGTTGCCTTTGTAA 34867 Query 36584 GGTTCGTTCCATGCG--CTAACGCCTGTTTGTGGTTTTTGGAGCGCCGCCCACGGATCGT 36641 ||||||||||| | | | ||| ||| | ||||||||||| | || ||||| || |||| Sbjct 34866 GGTTCGTTCCAGGAGGACAAAC-CCT-TCTGTGGTTTTTGTAAAGCTGCCCAAGGGTCGT 34809 Query 36642 GTATGGAAACTTTAAAATTGTCCCTGCCAGC-GCACGATCTTTGCAACGCTTCAAAACTC 36700 | || |||||||| || | || | ||| || ||| |||| |||||| |||| ||||| Sbjct 34808 GGATAGAAACTTTGAAGTCCTCTC-GCCCGCTGCAAGATCGTTGCAAAGCTTGGAAACTT 34750 Query 36701 CCCGTGATAGATTTTAAACTGTCGTTTATACCGTCACCGCCGCAAATCGGTATAAATCCG 36760 || ||| ||| ||||||||||| || ||||||||||| || || || ||||||||| Sbjct 34749 CCTTCGATTTCTTTCAAACTGTCGTTAATTCCGTCACCGCCACAGATGGGGATAAATCCG 34690 Query 36761 TATAAAATGTGCGAAAGGTTCGGCGTGGGCACTTTGTCCACGGGAAAAGATCGACCGTAA 36820 || | || || | ||| ||||| |||| || || || || || || || | |||| Sbjct 34689 TAAAGAAGATGTGTAAGATTCGGAATGGGTACCTTATCTACTGGGAATTTTCTAGGGTAA 34630 Query 36821 ACGCCCCATTCGACAAAATAGGC 36843 || ||||| || |||||||| || Sbjct 34629 ACACCCCACTCCACAAAATAAGC 34607 >SEQ58356 Length=38410 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 ||||||||||| || |||||| | || || ||||| || ||| |||| || || | | Sbjct 35266 ATGCAGATATTCGTGAAAACCCTTACGGGGAAAACCATCACCCTCGAGGTGGAGGCCTCC 35207 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 || | | | |||| ||| || | ||||||| | ||||| || | || || ||| Sbjct 35206 GATACTATTGAAAATGTAAAAGCAAAAATTCAAGATAAAGAGGGTATTCCACCGGATCAG 35147 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 |||||||| || | ||| || ||||| ||||||||| | || | ||| |||| Sbjct 35146 CAACGTTTGATCTTTGCTGGTAAACAGCTGGAAGATGGCCGCACATTATCCGACTACAAT 35087 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGTCAA 25062 || ||||| ||| | || | ||| | ||||| | || | |||||| || Sbjct 35086 ATTCAGAAGGAGTCTACATTGCATCTTGTGTTGAGGTTAAGAGGAGGTAAA 35036 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 417961618045280